Wall clock time and date at job start Tue Mar 31 2020 17:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38606 * 120.32330 * 2 1 4 4 N 1.31499 * 120.89810 * 179.70076 * 3 2 1 5 5 C 1.32749 * 121.64219 * 0.56653 * 4 3 2 6 6 C 1.48163 * 119.72200 * 179.70715 * 5 4 3 7 7 O 1.21512 * 120.00240 * 179.72811 * 6 5 4 8 8 N 1.34781 * 120.00062 * 359.73315 * 6 5 4 9 9 C 1.46503 * 120.00049 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.09002 * 108.45330 * 57.87787 * 10 9 8 12 12 C 1.47486 * 108.54728 * 175.84817 * 10 9 8 13 13 N 1.50125 * 106.48513 * 178.01130 * 12 10 9 14 14 C 1.36929 * 120.63754 * 111.36996 * 13 12 10 15 15 H 1.07999 * 120.00213 * 155.82262 * 14 13 12 16 16 C 1.38811 * 119.99950 * 335.82695 * 14 13 12 17 17 N 1.31617 * 120.00151 * 340.44346 * 16 14 13 18 18 Si 1.86801 * 120.00034 * 160.44245 * 16 14 13 19 19 H 1.48494 * 109.47175 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47257 * 300.00362 * 18 16 14 21 21 H 1.48504 * 109.47190 * 59.99826 * 18 16 14 22 22 C 1.43425 * 118.72616 * 291.09709 * 13 12 10 23 23 C 1.55336 * 116.23732 * 89.62503 * 22 13 12 24 24 C 1.55181 * 108.87527 * 319.46297 * 23 22 13 25 25 O 1.39639 * 110.56783 * 322.14149 * 24 23 22 26 26 C 1.39269 * 120.55237 * 359.44096 * 5 4 3 27 27 C 1.38586 * 120.32251 * 179.97438 * 2 1 3 28 28 C 1.50699 * 120.75540 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.47448 * 270.02102 * 1 2 3 30 30 H 1.09000 * 109.47275 * 30.02037 * 1 2 3 31 31 H 1.09001 * 109.47650 * 150.02046 * 1 2 3 32 32 H 1.07998 * 119.54999 * 359.95727 * 3 2 1 33 33 H 0.97000 * 119.99838 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47027 * 59.99740 * 9 8 6 35 35 H 1.09002 * 109.46850 * 299.99673 * 9 8 6 36 36 H 1.08995 * 110.11648 * 58.80095 * 12 10 9 37 37 H 1.08997 * 110.15233 * 297.23722 * 12 10 9 38 38 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 39 39 H 1.08997 * 108.12625 * 211.38277 * 22 13 12 40 40 H 1.08999 * 108.12979 * 328.08579 * 22 13 12 41 41 H 1.08998 * 109.56591 * 79.28523 * 23 22 13 42 42 H 1.09002 * 109.56988 * 199.64262 * 23 22 13 43 43 H 1.09004 * 109.25672 * 82.42923 * 24 23 22 44 44 H 1.09006 * 109.25717 * 201.89719 * 24 23 22 45 45 H 1.08003 * 120.46288 * 180.25109 * 26 5 4 46 46 H 1.09000 * 109.46962 * 270.01995 * 28 27 2 47 47 H 1.09000 * 109.47348 * 30.02143 * 28 27 2 48 48 H 1.08998 * 109.46760 * 150.02675 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5217 1.2096 0.0059 5 6 4.2294 0.0866 0.0009 6 6 5.7096 0.1511 0.0013 7 8 6.3625 -0.8737 0.0017 8 7 6.3321 1.3466 0.0013 9 6 7.7957 1.4104 0.0023 10 6 8.2423 2.8737 0.0015 11 1 7.8166 3.3649 0.8765 12 6 9.7130 2.9154 0.1037 13 7 10.1030 4.3641 0.0491 14 6 10.6200 4.9896 1.1520 15 1 11.2441 5.8631 1.0345 16 6 10.3420 4.5009 2.4212 17 7 9.3088 3.7075 2.6092 18 14 11.4343 4.9693 3.8624 19 1 10.9277 4.3210 5.0986 20 1 12.8233 4.5145 3.5991 21 1 11.4207 6.4442 4.0349 22 6 9.9292 5.0788 -1.1821 23 6 8.5552 5.7748 -1.3841 24 6 7.4351 4.8350 -0.8640 25 8 7.7307 3.5046 -1.1680 26 6 3.5922 -1.1518 0.0008 27 6 2.2066 -1.1963 0.0005 28 6 1.4778 -2.5153 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6647 2.1305 -0.0007 33 1 5.8109 2.1647 0.0014 34 1 8.1817 0.9125 -0.8873 35 1 8.1804 0.9132 0.8928 36 1 10.1622 2.3770 -0.7308 37 1 10.0364 2.4779 1.0482 38 1 9.1147 3.3657 3.4960 39 1 10.7072 5.8396 -1.2454 40 1 10.0752 4.3784 -2.0044 41 1 8.5347 6.7110 -0.8262 42 1 8.4001 5.9760 -2.4441 43 1 7.3459 4.9458 0.2167 44 1 6.4898 5.1088 -1.3326 45 1 4.1695 -2.0646 0.0008 46 1 1.3014 -2.8329 1.0282 47 1 0.5235 -2.4032 -0.5140 48 1 2.0815 -3.2639 -0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073706089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:01 Heat of formation + Delta-G solvation = -21.172614 kcal Electronic energy + Delta-G solvation = -29141.297518 eV Core-core repulsion = 25197.070244 eV Total energy + Delta-G solvation = -3944.227274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.77806 -39.27940 -38.46586 -35.00702 -34.87198 -34.41806 -32.60727 -32.09701 -31.10375 -28.94270 -28.48511 -27.44240 -25.43665 -25.24494 -23.14230 -22.96744 -22.08478 -20.74131 -19.92853 -19.54791 -17.70244 -17.19285 -16.84581 -15.97238 -15.40500 -15.36558 -15.22875 -14.96769 -14.79726 -14.55944 -14.26649 -14.03098 -13.79819 -13.37437 -13.23908 -13.16687 -13.06916 -12.88094 -12.82247 -12.45221 -12.24826 -12.17186 -11.89987 -11.78405 -11.38445 -11.18787 -10.81099 -10.71571 -10.47275 -10.21008 -10.08242 -9.91910 -9.67815 -9.64805 -9.54894 -9.44818 -9.13604 -8.74793 -8.59864 -8.46357 -6.79404 -5.89160 -3.27551 0.55666 1.03826 2.83786 3.35850 3.38712 3.42599 3.44463 3.83278 4.13584 4.38700 4.45862 4.56344 4.59667 4.64280 4.76811 5.09631 5.13254 5.17292 5.27112 5.27411 5.31654 5.34144 5.45887 5.63237 5.66045 5.74200 5.84277 5.87182 5.96820 6.04307 6.05571 6.18917 6.37805 6.44273 6.45595 6.51285 6.60251 6.71590 6.75120 6.84962 6.95212 6.99013 7.15368 7.35517 7.58746 7.74244 7.94300 8.18775 8.34808 8.47560 9.09679 9.78036 10.32510 11.19904 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.002762 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.537398 B =10136.408508 C =10613.777228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C 0.102 3.898 4 N -0.456 5.456 5 C 0.083 3.917 6 C 0.564 3.436 7 O -0.544 6.544 8 N -0.690 5.690 9 C 0.118 3.882 10 C 0.061 3.939 11 H 0.107 0.893 12 C 0.144 3.856 13 N -0.588 5.588 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.906 5.906 18 Si 0.904 3.096 19 H -0.291 1.291 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.161 3.839 23 C -0.172 4.172 24 C 0.068 3.932 25 O -0.369 6.369 26 C -0.111 4.111 27 C -0.054 4.054 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.020 0.980 37 H 0.104 0.896 38 H 0.256 0.744 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.147 0.853 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 -7.608 -5.436 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.058 4.058 4 N -0.167 5.167 5 C -0.054 4.054 6 C 0.348 3.652 7 O -0.422 6.422 8 N -0.339 5.339 9 C -0.006 4.006 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.019 3.981 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.552 5.552 18 Si 0.734 3.266 19 H -0.217 1.217 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.032 3.968 23 C -0.213 4.213 24 C -0.010 4.010 25 O -0.287 6.287 26 C -0.132 4.132 27 C -0.062 4.062 28 C -0.174 4.174 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.165 0.835 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.878 -7.691 -5.446 19.331 hybrid contribution -0.230 0.176 1.037 1.077 sum -17.108 -7.515 -4.408 19.199 Atomic orbital electron populations 1.20807 0.90042 1.03369 1.02826 1.21000 0.97677 0.93686 1.00368 1.22699 0.89366 0.97579 0.96177 1.67588 1.08585 1.30347 1.10194 1.21246 0.94550 0.89494 1.00158 1.17858 0.85614 0.84260 0.77512 1.90756 1.65881 1.34263 1.51339 1.45810 1.08348 1.08229 1.71523 1.21801 0.78288 0.98394 1.02102 1.22306 0.98189 0.90650 0.88631 0.87520 1.20867 0.91156 0.85321 1.00755 1.44094 1.72942 1.05082 1.08685 1.19214 1.22895 1.11537 0.84252 0.91347 1.24893 0.96908 1.00443 0.97317 1.69869 1.25739 1.37615 1.21948 0.86339 0.80568 0.77935 0.81748 1.21664 1.21112 1.21062 1.20368 0.93015 0.94428 0.88981 1.23587 0.99543 0.99215 0.98984 1.22337 0.95469 0.82909 1.00281 1.87516 1.83090 1.22923 1.35197 1.22005 0.94076 0.99196 0.97900 1.20179 0.93265 0.95792 0.96979 1.20872 1.00363 0.93074 1.03075 0.90578 0.90943 0.90884 0.82180 0.75290 0.91748 0.90138 0.96180 0.87790 0.93412 0.94919 0.95026 0.92522 0.93211 0.91908 0.93059 0.83500 0.90336 0.90615 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.65 36.00 0.35 -0.28 16 2 C -0.13 -1.15 5.91 -104.36 -0.62 -1.76 16 3 C 0.10 1.10 10.86 -17.56 -0.19 0.91 16 4 N -0.46 -6.47 9.54 -9.80 -0.09 -6.56 16 5 C 0.08 1.27 6.75 -83.01 -0.56 0.71 16 6 C 0.56 10.13 7.81 -12.18 -0.10 10.03 16 7 O -0.54 -10.98 16.32 5.36 0.09 -10.89 16 8 N -0.69 -12.48 5.42 -61.15 -0.33 -12.81 16 9 C 0.12 2.29 5.24 -4.04 -0.02 2.27 16 10 C 0.06 1.28 1.95 -29.39 -0.06 1.23 16 11 H 0.11 2.53 5.27 -51.93 -0.27 2.25 16 12 C 0.14 3.32 4.75 -4.67 -0.02 3.29 16 13 N -0.59 -14.29 2.60 -174.20 -0.45 -14.74 16 14 C -0.25 -6.57 9.62 -15.06 -0.14 -6.71 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 17 N -0.91 -24.01 9.59 55.49 0.53 -23.48 16 18 Si 0.90 21.09 29.60 -169.99 -5.03 16.06 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.16 3.46 5.33 -4.43 -0.02 3.44 16 23 C -0.17 -3.29 6.75 -24.34 -0.16 -3.46 16 24 C 0.07 1.32 6.38 38.31 0.24 1.57 16 25 O -0.37 -7.54 9.54 -31.93 -0.30 -7.85 16 26 C -0.11 -1.41 9.34 -39.05 -0.36 -1.78 16 27 C -0.05 -0.54 5.91 -104.35 -0.62 -1.15 16 28 C -0.12 -0.76 9.67 36.00 0.35 -0.41 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.33 6.06 -51.93 -0.31 0.01 16 32 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.41 7.23 7.66 -40.82 -0.31 6.92 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 2.61 6.02 -51.93 -0.31 2.30 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 40 H 0.03 0.66 7.97 -51.93 -0.41 0.25 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.37 6.66 -51.93 -0.35 1.02 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.15 1.80 7.64 -52.48 -0.40 1.40 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.37 6.07 -51.93 -0.32 0.05 16 48 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -29.85 381.64 -9.16 -39.02 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.30 Total: 7.64 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.02 Total: 7.87 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.35 Total: -57.60 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.22 Total: -18.74 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.85 -9.16 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073706089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.845 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds