Wall clock time and date at job start Tue Mar 31 2020 17:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38606 * 120.32330 * 2 1 4 4 N 1.31499 * 120.89810 * 179.70076 * 3 2 1 5 5 C 1.32749 * 121.64219 * 0.56653 * 4 3 2 6 6 C 1.48163 * 119.72200 * 179.70715 * 5 4 3 7 7 O 1.21512 * 120.00240 * 179.72811 * 6 5 4 8 8 N 1.34781 * 120.00062 * 359.73315 * 6 5 4 9 9 C 1.46503 * 120.00049 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.09002 * 108.45330 * 57.87787 * 10 9 8 12 12 C 1.47486 * 108.54728 * 175.84817 * 10 9 8 13 13 N 1.50125 * 106.48513 * 178.01130 * 12 10 9 14 14 C 1.36929 * 120.63754 * 111.36996 * 13 12 10 15 15 H 1.07999 * 120.00213 * 155.82262 * 14 13 12 16 16 C 1.38811 * 119.99950 * 335.82695 * 14 13 12 17 17 N 1.31617 * 120.00151 * 340.44346 * 16 14 13 18 18 Si 1.86801 * 120.00034 * 160.44245 * 16 14 13 19 19 H 1.48494 * 109.47175 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47257 * 300.00362 * 18 16 14 21 21 H 1.48504 * 109.47190 * 59.99826 * 18 16 14 22 22 C 1.43425 * 118.72616 * 291.09709 * 13 12 10 23 23 C 1.55336 * 116.23732 * 89.62503 * 22 13 12 24 24 C 1.55181 * 108.87527 * 319.46297 * 23 22 13 25 25 O 1.39639 * 110.56783 * 322.14149 * 24 23 22 26 26 C 1.39269 * 120.55237 * 359.44096 * 5 4 3 27 27 C 1.38586 * 120.32251 * 179.97438 * 2 1 3 28 28 C 1.50699 * 120.75540 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.47448 * 270.02102 * 1 2 3 30 30 H 1.09000 * 109.47275 * 30.02037 * 1 2 3 31 31 H 1.09001 * 109.47650 * 150.02046 * 1 2 3 32 32 H 1.07998 * 119.54999 * 359.95727 * 3 2 1 33 33 H 0.97000 * 119.99838 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47027 * 59.99740 * 9 8 6 35 35 H 1.09002 * 109.46850 * 299.99673 * 9 8 6 36 36 H 1.08995 * 110.11648 * 58.80095 * 12 10 9 37 37 H 1.08997 * 110.15233 * 297.23722 * 12 10 9 38 38 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 39 39 H 1.08997 * 108.12625 * 211.38277 * 22 13 12 40 40 H 1.08999 * 108.12979 * 328.08579 * 22 13 12 41 41 H 1.08998 * 109.56591 * 79.28523 * 23 22 13 42 42 H 1.09002 * 109.56988 * 199.64262 * 23 22 13 43 43 H 1.09004 * 109.25672 * 82.42923 * 24 23 22 44 44 H 1.09006 * 109.25717 * 201.89719 * 24 23 22 45 45 H 1.08003 * 120.46288 * 180.25109 * 26 5 4 46 46 H 1.09000 * 109.46962 * 270.01995 * 28 27 2 47 47 H 1.09000 * 109.47348 * 30.02143 * 28 27 2 48 48 H 1.08998 * 109.46760 * 150.02675 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5217 1.2096 0.0059 5 6 4.2294 0.0866 0.0009 6 6 5.7096 0.1511 0.0013 7 8 6.3625 -0.8737 0.0017 8 7 6.3321 1.3466 0.0013 9 6 7.7957 1.4104 0.0023 10 6 8.2423 2.8737 0.0015 11 1 7.8166 3.3649 0.8765 12 6 9.7130 2.9154 0.1037 13 7 10.1030 4.3641 0.0491 14 6 10.6200 4.9896 1.1520 15 1 11.2441 5.8631 1.0345 16 6 10.3420 4.5009 2.4212 17 7 9.3088 3.7075 2.6092 18 14 11.4343 4.9693 3.8624 19 1 10.9277 4.3210 5.0986 20 1 12.8233 4.5145 3.5991 21 1 11.4207 6.4442 4.0349 22 6 9.9292 5.0788 -1.1821 23 6 8.5552 5.7748 -1.3841 24 6 7.4351 4.8350 -0.8640 25 8 7.7307 3.5046 -1.1680 26 6 3.5922 -1.1518 0.0008 27 6 2.2066 -1.1963 0.0005 28 6 1.4778 -2.5153 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6647 2.1305 -0.0007 33 1 5.8109 2.1647 0.0014 34 1 8.1817 0.9125 -0.8873 35 1 8.1804 0.9132 0.8928 36 1 10.1622 2.3770 -0.7308 37 1 10.0364 2.4779 1.0482 38 1 9.1147 3.3657 3.4960 39 1 10.7072 5.8396 -1.2454 40 1 10.0752 4.3784 -2.0044 41 1 8.5347 6.7110 -0.8262 42 1 8.4001 5.9760 -2.4441 43 1 7.3459 4.9458 0.2167 44 1 6.4898 5.1088 -1.3326 45 1 4.1695 -2.0646 0.0008 46 1 1.3014 -2.8329 1.0282 47 1 0.5235 -2.4032 -0.5140 48 1 2.0815 -3.2639 -0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073706089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:00 Heat of formation + Delta-G solvation = -39.831912 kcal Electronic energy + Delta-G solvation = -29142.106646 eV Core-core repulsion = 25197.070244 eV Total energy + Delta-G solvation = -3945.036402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79331 -40.81134 -39.91501 -36.81174 -36.10904 -35.56895 -33.84147 -33.42721 -32.90353 -30.42154 -29.42710 -28.34630 -27.07778 -26.91090 -24.60397 -23.78308 -23.42469 -22.43620 -21.34373 -21.13289 -19.05290 -18.75751 -18.03390 -17.66453 -16.86276 -16.58189 -16.52656 -16.30919 -16.10150 -16.00745 -15.54308 -15.41828 -15.27642 -14.82580 -14.53275 -14.24601 -14.03985 -13.89165 -13.69101 -13.66197 -13.58930 -13.44263 -13.28275 -12.95650 -12.70579 -12.61245 -12.53089 -12.45750 -12.31875 -11.93334 -11.80269 -11.47035 -11.37637 -11.20500 -10.56760 -10.54925 -10.51162 -10.28535 -10.22446 -9.86945 -8.72571 -7.89203 -5.30003 -0.40761 0.19909 1.47946 1.51576 1.56853 1.64491 2.05931 2.52319 2.79550 3.07653 3.14246 3.27642 3.49723 3.69173 3.74248 3.87358 3.90583 4.11201 4.24478 4.26902 4.35570 4.38578 4.51715 4.55968 4.64299 4.70402 4.71176 4.74118 4.76881 4.77971 4.90152 4.92913 5.00602 5.06363 5.13475 5.17124 5.17536 5.21979 5.31950 5.34819 5.38036 5.39486 5.48135 5.67741 5.69719 6.34647 6.38544 6.49776 6.78667 7.07829 7.10612 7.82906 8.36187 9.16612 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.002762 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.537398 B =10136.408508 C =10613.777228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C 0.091 3.909 4 N -0.481 5.481 5 C 0.050 3.950 6 C 0.561 3.439 7 O -0.576 6.576 8 N -0.690 5.690 9 C 0.130 3.870 10 C 0.081 3.919 11 H 0.082 0.918 12 C 0.146 3.854 13 N -0.602 5.602 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.038 4.038 17 N -0.918 5.918 18 Si 0.961 3.039 19 H -0.295 1.295 20 H -0.285 1.285 21 H -0.280 1.280 22 C 0.154 3.846 23 C -0.164 4.164 24 C 0.069 3.931 25 O -0.368 6.368 26 C -0.118 4.118 27 C -0.056 4.056 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.189 0.811 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 -7.506 -6.172 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.069 4.069 4 N -0.192 5.192 5 C -0.086 4.086 6 C 0.347 3.653 7 O -0.456 6.456 8 N -0.339 5.339 9 C 0.005 3.995 10 C 0.022 3.978 11 H 0.100 0.900 12 C 0.021 3.979 13 N -0.323 5.323 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.234 4.234 17 N -0.564 5.564 18 Si 0.790 3.210 19 H -0.221 1.221 20 H -0.211 1.211 21 H -0.206 1.206 22 C 0.026 3.974 23 C -0.205 4.205 24 C -0.009 4.009 25 O -0.287 6.287 26 C -0.139 4.139 27 C -0.064 4.064 28 C -0.172 4.172 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.206 0.794 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.160 0.840 46 H 0.109 0.891 47 H 0.118 0.882 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.774 -7.573 -6.205 22.064 hybrid contribution 0.557 0.155 1.222 1.352 sum -19.216 -7.417 -4.983 21.192 Atomic orbital electron populations 1.20943 0.86794 1.05035 1.04132 1.21464 0.99815 0.92618 0.97230 1.23289 0.88400 0.99643 0.95570 1.67488 1.10339 1.30181 1.11209 1.20841 0.92796 0.90975 1.04024 1.18374 0.87191 0.83454 0.76276 1.90714 1.67083 1.35048 1.52793 1.45725 1.07554 1.08693 1.71884 1.21515 0.79486 0.97147 1.01367 1.21863 0.96789 0.91174 0.87955 0.90000 1.20782 0.92431 0.85017 0.99676 1.44224 1.73438 1.05569 1.09054 1.19383 1.23148 1.11675 0.85165 0.91741 1.25502 0.97868 1.00863 0.99180 1.70015 1.26428 1.38158 1.21781 0.85451 0.78905 0.77631 0.79021 1.22127 1.21112 1.20602 1.20496 0.94548 0.94540 0.87834 1.23496 0.97625 0.98563 1.00778 1.22388 0.97108 0.82466 0.98948 1.87509 1.82993 1.23523 1.34641 1.22099 0.95656 0.98053 0.98137 1.20593 0.92115 0.97906 0.95743 1.20976 1.00961 0.91046 1.04200 0.89149 0.89421 0.89172 0.79418 0.75000 0.91805 0.91542 0.95466 0.90213 0.94047 0.94839 0.94670 0.92642 0.90277 0.94679 0.89933 0.84013 0.89128 0.88231 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.65 71.23 0.69 -0.06 16 2 C -0.11 -1.69 5.91 -19.69 -0.12 -1.81 16 3 C 0.09 1.81 10.86 84.83 0.92 2.73 16 4 N -0.48 -13.55 9.54 -184.91 -1.76 -15.32 16 5 C 0.05 1.55 6.75 41.89 0.28 1.83 16 6 C 0.56 21.13 7.81 86.88 0.68 21.81 16 7 O -0.58 -24.45 16.32 -3.75 -0.06 -24.51 16 8 N -0.69 -26.03 5.42 -465.66 -2.52 -28.56 16 9 C 0.13 5.27 5.24 86.38 0.45 5.72 16 10 C 0.08 3.53 1.95 28.87 0.06 3.58 16 11 H 0.08 4.04 5.27 -2.39 -0.01 4.03 16 12 C 0.15 6.92 4.75 83.95 0.40 7.32 16 13 N -0.60 -29.67 2.60 -705.04 -1.84 -31.50 16 14 C -0.26 -14.08 9.62 84.03 0.81 -13.27 16 15 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 16 C -0.04 -2.02 4.91 84.86 0.42 -1.60 16 17 N -0.92 -50.06 9.59 21.65 0.21 -49.86 16 18 Si 0.96 43.98 29.60 68.60 2.03 46.01 16 19 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.15 6.53 5.33 87.75 0.47 7.00 16 23 C -0.16 -6.03 6.75 32.15 0.22 -5.81 16 24 C 0.07 2.61 6.38 72.73 0.46 3.08 16 25 O -0.37 -15.00 9.54 -137.18 -1.31 -16.30 16 26 C -0.12 -3.02 9.34 22.61 0.21 -2.81 16 27 C -0.06 -0.99 5.91 -19.69 -0.12 -1.11 16 28 C -0.12 -1.14 9.67 71.24 0.69 -0.45 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.38 8.09 -2.39 -0.02 0.36 16 31 H 0.09 0.35 6.06 -2.39 -0.01 0.33 16 32 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.41 15.07 7.66 -92.71 -0.71 14.36 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 4.18 6.02 -2.39 -0.01 4.17 16 38 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.03 1.39 7.96 -2.39 -0.02 1.38 16 40 H 0.03 1.45 7.97 -2.39 -0.02 1.43 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.03 1.54 6.66 -2.38 -0.02 1.53 16 44 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 45 H 0.14 3.62 7.64 -2.91 -0.02 3.60 16 46 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.10 0.52 6.07 -2.39 -0.01 0.51 16 48 H 0.08 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -66.51 381.64 1.53 -64.98 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.27 Total: 28.91 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 6.52 Total: 26.15 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -5.92 Total: -125.23 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.37 Total: -40.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.51 1.53 -64.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073706089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.149 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds