Wall clock time and date at job start Tue Mar 31 2020 18:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 125.56176 * 2 1 4 4 C 1.39826 * 107.86344 * 179.77925 * 3 2 1 5 5 C 1.50707 * 126.45819 * 180.30658 * 4 3 2 6 6 C 1.37871 * 107.08668 * 0.41627 * 4 3 2 7 7 C 1.46677 * 126.23299 * 179.84317 * 6 4 3 8 8 O 1.21698 * 120.00357 * 31.09663 * 7 6 4 9 9 N 1.34785 * 120.00028 * 211.09297 * 7 6 4 10 10 C 1.46977 * 120.71810 * 3.42234 * 9 7 6 11 11 C 1.53160 * 108.44749 * 234.55997 * 10 9 7 12 12 C 1.52685 * 110.64667 * 305.99400 * 11 10 9 13 13 H 1.09003 * 109.87251 * 178.61326 * 12 11 10 14 14 O 1.42688 * 109.80098 * 297.72761 * 12 11 10 15 15 C 1.43080 * 113.86937 * 184.70715 * 14 12 11 16 16 C 1.53227 * 109.44667 * 298.35238 * 15 14 12 17 17 N 1.47168 * 108.69913 * 51.57956 * 16 15 14 18 18 C 1.36941 * 121.21702 * 129.33319 * 17 16 15 19 19 H 1.08000 * 119.99709 * 200.37955 * 18 17 16 20 20 C 1.38809 * 120.00404 * 20.38406 * 18 17 16 21 21 N 1.31615 * 120.00225 * 16.29837 * 20 18 17 22 22 Si 1.86797 * 119.99993 * 196.30586 * 20 18 17 23 23 H 1.48499 * 109.47192 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47263 * 119.99766 * 22 20 18 25 25 H 1.48502 * 109.47087 * 239.99644 * 22 20 18 26 26 C 1.47591 * 117.55730 * 309.06064 * 17 16 15 27 27 H 1.08994 * 110.31465 * 172.29091 * 26 17 16 28 28 C 1.46796 * 120.71922 * 183.44720 * 9 7 6 29 29 N 1.35532 * 125.56243 * 180.02562 * 2 1 3 30 30 H 0.96993 * 125.68506 * 359.97438 * 29 2 1 31 31 H 1.09002 * 109.46853 * 269.95073 * 1 2 3 32 32 H 1.08989 * 109.47622 * 29.95144 * 1 2 3 33 33 H 1.08999 * 109.47138 * 149.96084 * 1 2 3 34 34 H 1.07997 * 126.06500 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.46846 * 270.13270 * 5 4 3 36 36 H 1.08995 * 109.46974 * 30.13592 * 5 4 3 37 37 H 1.09001 * 109.47273 * 150.13840 * 5 4 3 38 38 H 1.08999 * 109.64775 * 354.24778 * 10 9 7 39 39 H 1.09006 * 109.63956 * 114.87490 * 10 9 7 40 40 H 1.08998 * 109.41610 * 65.58819 * 11 10 9 41 41 H 1.08999 * 109.41486 * 185.38589 * 11 10 9 42 42 H 1.08999 * 109.47201 * 58.34615 * 15 14 12 43 43 H 1.08997 * 109.47082 * 178.35482 * 15 14 12 44 44 H 1.09004 * 109.59870 * 291.81687 * 16 15 14 45 45 H 1.08995 * 109.59873 * 171.34955 * 16 15 14 46 46 H 0.96994 * 120.00463 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.52398 * 5.77282 * 28 9 7 48 48 H 1.08998 * 109.57259 * 245.61265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0051 5 6 4.8485 1.5593 0.0135 6 6 3.6122 -0.7018 -0.0014 7 6 4.7860 -1.5813 -0.0025 8 8 5.8127 -1.2266 0.5462 9 7 4.7276 -2.7825 -0.6111 10 6 3.5214 -3.1958 -1.3423 11 6 3.0564 -4.5452 -0.7866 12 6 4.1927 -5.5642 -0.8264 13 1 3.8555 -6.5117 -0.4060 14 8 4.5936 -5.7886 -2.1773 15 6 5.5842 -6.8105 -2.3251 16 6 6.8543 -6.4026 -1.5712 17 7 6.4877 -6.0332 -0.1946 18 6 7.1431 -6.5682 0.8823 19 1 6.6775 -6.5593 1.8567 20 6 8.4058 -7.1218 0.7214 21 7 9.1071 -6.8580 -0.3606 22 14 9.1097 -8.2414 2.0407 23 1 8.1304 -8.3773 3.1487 24 1 9.3876 -9.5789 1.4582 25 1 10.3708 -7.6576 2.5641 26 6 5.3920 -5.0604 -0.0174 27 1 5.1282 -4.9754 1.0367 28 6 5.8670 -3.7065 -0.5576 29 7 2.2953 -1.1025 -0.0005 30 1 1.9835 -2.0210 -0.0006 31 1 -0.3633 -0.0009 1.0277 32 1 -0.3634 0.8903 -0.5130 33 1 -0.3633 -0.8896 -0.5144 34 1 1.9544 2.1268 0.0004 35 1 5.1465 1.7769 -1.0122 36 1 4.6201 2.4910 0.5310 37 1 5.6625 1.0482 0.5276 38 1 2.7363 -2.4525 -1.2039 39 1 3.7523 -3.2962 -2.4029 40 1 2.7377 -4.4205 0.2482 41 1 2.2196 -4.9126 -1.3806 42 1 5.2040 -7.7468 -1.9167 43 1 5.8154 -6.9422 -3.3821 44 1 7.3163 -5.5494 -2.0679 45 1 7.5525 -7.2393 -1.5517 46 1 9.9893 -7.2451 -0.4732 47 1 6.6346 -3.3005 0.1011 48 1 6.2780 -3.8377 -1.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074280187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:26 Heat of formation + Delta-G solvation = 8.682969 kcal Electronic energy + Delta-G solvation = -30390.115220 eV Core-core repulsion = 26447.182581 eV Total energy + Delta-G solvation = -3942.932639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65668 -39.77036 -38.31749 -35.91955 -34.73118 -32.81734 -32.20944 -31.63438 -31.31070 -29.54194 -27.89197 -27.54149 -26.54304 -24.50499 -23.92226 -22.87614 -21.65593 -20.79563 -20.55723 -18.99185 -18.51183 -17.53180 -16.98317 -16.16106 -15.55572 -15.41649 -15.22645 -15.06225 -14.85149 -14.46262 -14.09375 -13.92874 -13.68829 -13.34949 -13.19952 -13.10042 -13.04647 -12.93592 -12.67565 -12.54793 -12.35740 -12.23715 -12.03780 -11.87878 -11.49979 -11.43436 -11.10477 -10.99654 -10.84380 -10.61527 -10.26334 -10.24244 -9.98880 -9.70552 -9.64091 -9.07231 -8.76912 -8.66633 -8.34245 -7.97050 -6.86692 -5.87205 -3.29795 1.55540 2.62506 2.92306 3.17754 3.32268 3.40095 3.42031 3.54139 4.26749 4.37190 4.61224 4.67631 4.80836 4.91337 4.97753 5.15596 5.22838 5.25291 5.27696 5.35130 5.38159 5.50058 5.58301 5.62186 5.69286 5.71386 5.87437 5.90030 5.91660 5.95383 6.00974 6.09863 6.15359 6.23107 6.31670 6.37614 6.41477 6.58599 6.67025 6.76865 6.88551 6.96857 7.10091 7.31369 7.51788 7.64862 7.67985 7.84902 8.25634 8.40539 9.05450 9.67030 10.20619 11.18386 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.003436 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.509602 B = 8147.434872 C = 8930.264184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.037 3.963 3 C -0.205 4.205 4 C -0.084 4.084 5 C -0.094 4.094 6 C -0.044 4.044 7 C 0.584 3.416 8 O -0.527 6.527 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.127 4.127 12 C 0.084 3.916 13 H 0.056 0.944 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.129 3.871 17 N -0.586 5.586 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.001 4.001 21 N -0.904 5.904 22 Si 0.909 3.091 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.133 3.867 27 H 0.073 0.927 28 C 0.107 3.893 29 N -0.538 5.538 30 H 0.418 0.582 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.026 0.974 45 H 0.113 0.887 46 H 0.255 0.745 47 H 0.091 0.909 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 10.172 -3.156 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.229 4.229 4 C -0.092 4.092 5 C -0.151 4.151 6 C -0.156 4.156 7 C 0.371 3.629 8 O -0.403 6.403 9 N -0.337 5.337 10 C -0.025 4.025 11 C -0.165 4.165 12 C 0.024 3.976 13 H 0.074 0.926 14 O -0.309 6.309 15 C -0.039 4.039 16 C 0.003 3.997 17 N -0.308 5.308 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.199 4.199 21 N -0.549 5.549 22 Si 0.738 3.262 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.024 3.976 27 H 0.091 0.909 28 C -0.016 4.016 29 N -0.140 5.140 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.179 10.166 -3.019 20.189 hybrid contribution 0.371 -1.235 0.723 1.478 sum -16.808 8.931 -2.296 19.172 Atomic orbital electron populations 1.20380 0.87835 1.03426 1.02863 1.20508 0.93566 0.86480 1.07342 1.20511 0.91794 0.97744 1.12865 1.19864 0.95444 0.90964 1.02905 1.20348 0.95006 0.97792 1.01925 1.20246 0.82966 0.94215 1.18160 1.17162 0.86449 0.80417 0.78824 1.90814 1.31048 1.73067 1.45407 1.48240 1.17026 1.16365 1.52094 1.21992 0.87277 0.95643 0.97634 1.21873 0.98242 0.94932 1.01492 1.22257 0.93919 0.96977 0.84407 0.92632 1.87732 1.59305 1.58394 1.25449 1.23359 0.90693 0.89664 1.00160 1.21728 0.93239 1.01440 0.83260 1.44408 1.38154 1.45393 1.02823 1.19297 0.97213 1.31990 0.89285 0.90981 1.24952 0.95487 1.01478 0.97945 1.69970 1.11318 1.45590 1.28004 0.86117 0.78816 0.80310 0.80921 1.20293 1.21497 1.21587 1.21580 0.89807 0.88493 0.97704 0.90916 1.22368 0.87668 0.88786 1.02785 1.42557 1.05465 1.08408 1.57611 0.73991 0.90805 0.89895 0.91625 0.84274 0.91912 0.91894 0.89987 0.90241 0.90151 0.90876 0.90139 0.94123 0.90112 0.95612 0.86953 0.93443 0.89040 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.41 36.01 0.37 -0.15 16 2 C 0.04 0.37 7.13 -81.95 -0.58 -0.21 16 3 C -0.20 -2.31 10.66 -39.98 -0.43 -2.73 16 4 C -0.08 -1.16 6.20 -104.16 -0.65 -1.81 16 5 C -0.09 -1.22 10.15 36.01 0.37 -0.86 16 6 C -0.04 -0.64 6.33 -81.98 -0.52 -1.16 16 7 C 0.58 10.39 7.54 -12.85 -0.10 10.29 16 8 O -0.53 -11.26 14.70 5.19 0.08 -11.18 16 9 N -0.60 -10.17 2.96 -174.31 -0.52 -10.69 16 10 C 0.10 1.29 5.78 -3.70 -0.02 1.26 16 11 C -0.13 -1.59 5.74 -26.81 -0.15 -1.74 16 12 C 0.08 1.43 2.82 -26.79 -0.08 1.36 16 13 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 14 O -0.39 -7.09 9.71 -35.23 -0.34 -7.44 16 15 C 0.04 0.74 6.97 37.27 0.26 1.00 16 16 C 0.13 2.98 5.04 -3.56 -0.02 2.96 16 17 N -0.59 -14.16 2.73 -163.88 -0.45 -14.61 16 18 C -0.25 -6.65 9.76 -15.06 -0.15 -6.80 16 19 H 0.07 1.90 7.87 -52.49 -0.41 1.49 16 20 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 16 21 N -0.90 -25.43 10.69 55.49 0.59 -24.83 16 22 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.13 2.71 2.96 -67.07 -0.20 2.52 16 27 H 0.07 1.52 7.99 -51.93 -0.41 1.11 16 28 C 0.11 2.19 5.66 -3.72 -0.02 2.16 16 29 N -0.54 -5.99 4.75 -5.69 -0.03 -6.01 16 30 H 0.42 3.80 6.72 -40.82 -0.27 3.53 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.40 8.14 -51.94 -0.42 -0.02 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.26 6.46 -51.93 -0.34 0.93 16 38 H 0.08 0.85 3.61 -51.93 -0.19 0.67 16 39 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.03 0.64 7.19 -51.93 -0.37 0.26 16 45 H 0.11 2.89 5.64 -51.93 -0.29 2.60 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.09 2.15 7.01 -51.93 -0.36 1.79 16 48 H 0.07 1.53 6.67 -51.93 -0.35 1.18 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -31.65 369.53 -9.32 -40.97 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.20 Total: 5.84 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -1.99 Total: 5.99 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.40 Total: -56.14 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.27 Total: -18.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.65 -9.32 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074280187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.649 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds