Wall clock time and date at job start Tue Mar 31 2020 18:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 125.56176 * 2 1 4 4 C 1.39826 * 107.86344 * 179.77925 * 3 2 1 5 5 C 1.50707 * 126.45819 * 180.30658 * 4 3 2 6 6 C 1.37871 * 107.08668 * 0.41627 * 4 3 2 7 7 C 1.46677 * 126.23299 * 179.84317 * 6 4 3 8 8 O 1.21698 * 120.00357 * 31.09663 * 7 6 4 9 9 N 1.34785 * 120.00028 * 211.09297 * 7 6 4 10 10 C 1.46977 * 120.71810 * 3.42234 * 9 7 6 11 11 C 1.53160 * 108.44749 * 234.55997 * 10 9 7 12 12 C 1.52685 * 110.64667 * 305.99400 * 11 10 9 13 13 H 1.09003 * 109.87251 * 178.61326 * 12 11 10 14 14 O 1.42688 * 109.80098 * 297.72761 * 12 11 10 15 15 C 1.43080 * 113.86937 * 184.70715 * 14 12 11 16 16 C 1.53227 * 109.44667 * 298.35238 * 15 14 12 17 17 N 1.47168 * 108.69913 * 51.57956 * 16 15 14 18 18 C 1.36941 * 121.21702 * 129.33319 * 17 16 15 19 19 H 1.08000 * 119.99709 * 200.37955 * 18 17 16 20 20 C 1.38809 * 120.00404 * 20.38406 * 18 17 16 21 21 N 1.31615 * 120.00225 * 16.29837 * 20 18 17 22 22 Si 1.86797 * 119.99993 * 196.30586 * 20 18 17 23 23 H 1.48499 * 109.47192 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47263 * 119.99766 * 22 20 18 25 25 H 1.48502 * 109.47087 * 239.99644 * 22 20 18 26 26 C 1.47591 * 117.55730 * 309.06064 * 17 16 15 27 27 H 1.08994 * 110.31465 * 172.29091 * 26 17 16 28 28 C 1.46796 * 120.71922 * 183.44720 * 9 7 6 29 29 N 1.35532 * 125.56243 * 180.02562 * 2 1 3 30 30 H 0.96993 * 125.68506 * 359.97438 * 29 2 1 31 31 H 1.09002 * 109.46853 * 269.95073 * 1 2 3 32 32 H 1.08989 * 109.47622 * 29.95144 * 1 2 3 33 33 H 1.08999 * 109.47138 * 149.96084 * 1 2 3 34 34 H 1.07997 * 126.06500 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.46846 * 270.13270 * 5 4 3 36 36 H 1.08995 * 109.46974 * 30.13592 * 5 4 3 37 37 H 1.09001 * 109.47273 * 150.13840 * 5 4 3 38 38 H 1.08999 * 109.64775 * 354.24778 * 10 9 7 39 39 H 1.09006 * 109.63956 * 114.87490 * 10 9 7 40 40 H 1.08998 * 109.41610 * 65.58819 * 11 10 9 41 41 H 1.08999 * 109.41486 * 185.38589 * 11 10 9 42 42 H 1.08999 * 109.47201 * 58.34615 * 15 14 12 43 43 H 1.08997 * 109.47082 * 178.35482 * 15 14 12 44 44 H 1.09004 * 109.59870 * 291.81687 * 16 15 14 45 45 H 1.08995 * 109.59873 * 171.34955 * 16 15 14 46 46 H 0.96994 * 120.00463 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.52398 * 5.77282 * 28 9 7 48 48 H 1.08998 * 109.57259 * 245.61265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0051 5 6 4.8485 1.5593 0.0135 6 6 3.6122 -0.7018 -0.0014 7 6 4.7860 -1.5813 -0.0025 8 8 5.8127 -1.2266 0.5462 9 7 4.7276 -2.7825 -0.6111 10 6 3.5214 -3.1958 -1.3423 11 6 3.0564 -4.5452 -0.7866 12 6 4.1927 -5.5642 -0.8264 13 1 3.8555 -6.5117 -0.4060 14 8 4.5936 -5.7886 -2.1773 15 6 5.5842 -6.8105 -2.3251 16 6 6.8543 -6.4026 -1.5712 17 7 6.4877 -6.0332 -0.1946 18 6 7.1431 -6.5682 0.8823 19 1 6.6775 -6.5593 1.8567 20 6 8.4058 -7.1218 0.7214 21 7 9.1071 -6.8580 -0.3606 22 14 9.1097 -8.2414 2.0407 23 1 8.1304 -8.3773 3.1487 24 1 9.3876 -9.5789 1.4582 25 1 10.3708 -7.6576 2.5641 26 6 5.3920 -5.0604 -0.0174 27 1 5.1282 -4.9754 1.0367 28 6 5.8670 -3.7065 -0.5576 29 7 2.2953 -1.1025 -0.0005 30 1 1.9835 -2.0210 -0.0006 31 1 -0.3633 -0.0009 1.0277 32 1 -0.3634 0.8903 -0.5130 33 1 -0.3633 -0.8896 -0.5144 34 1 1.9544 2.1268 0.0004 35 1 5.1465 1.7769 -1.0122 36 1 4.6201 2.4910 0.5310 37 1 5.6625 1.0482 0.5276 38 1 2.7363 -2.4525 -1.2039 39 1 3.7523 -3.2962 -2.4029 40 1 2.7377 -4.4205 0.2482 41 1 2.2196 -4.9126 -1.3806 42 1 5.2040 -7.7468 -1.9167 43 1 5.8154 -6.9422 -3.3821 44 1 7.3163 -5.5494 -2.0679 45 1 7.5525 -7.2393 -1.5517 46 1 9.9893 -7.2451 -0.4732 47 1 6.6346 -3.3005 0.1011 48 1 6.2780 -3.8377 -1.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074280187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:25 Heat of formation + Delta-G solvation = -11.784843 kcal Electronic energy + Delta-G solvation = -30391.002771 eV Core-core repulsion = 26447.182581 eV Total energy + Delta-G solvation = -3943.820190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.67094 -41.17332 -39.77320 -37.34655 -36.52207 -33.86681 -33.60412 -33.14714 -32.44686 -31.02802 -29.42747 -28.60582 -27.79593 -25.75737 -25.66736 -24.48413 -23.05224 -22.08789 -21.47612 -20.19795 -19.88786 -19.02464 -18.64633 -17.44618 -17.15144 -17.01426 -16.63117 -16.42972 -16.17443 -15.80118 -15.58070 -15.24015 -15.00909 -14.88096 -14.38322 -14.31045 -14.09086 -13.95154 -13.85918 -13.78469 -13.49579 -13.47565 -13.08599 -13.00117 -12.93374 -12.88688 -12.58778 -12.54390 -12.36987 -12.28111 -12.09025 -11.88752 -11.73289 -11.29166 -11.05589 -10.82175 -10.55842 -9.85567 -9.68233 -8.97100 -8.78371 -7.92874 -5.38923 0.46982 1.42133 1.44050 1.54297 1.69844 1.79392 1.99455 2.37794 2.45432 2.86186 3.19289 3.37070 3.50331 3.74909 3.81231 3.99304 4.05023 4.08051 4.16895 4.18380 4.29863 4.36951 4.41322 4.51320 4.57389 4.65351 4.68207 4.77940 4.81905 4.82873 4.84607 4.88415 4.89580 4.95833 4.99429 5.12680 5.16880 5.24257 5.26060 5.37063 5.47882 5.52034 5.62718 5.86335 5.96899 6.21110 6.32810 6.35615 6.53114 7.00482 7.03916 7.68558 8.19274 9.10150 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.003436 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.509602 B = 8147.434872 C = 8930.264184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.066 3.934 3 C -0.220 4.220 4 C -0.093 4.093 5 C -0.093 4.093 6 C -0.080 4.080 7 C 0.579 3.421 8 O -0.579 6.579 9 N -0.603 5.603 10 C 0.098 3.902 11 C -0.118 4.118 12 C 0.088 3.912 13 H 0.058 0.942 14 O -0.385 6.385 15 C 0.052 3.948 16 C 0.135 3.865 17 N -0.603 5.603 18 C -0.261 4.261 19 H 0.070 0.930 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.296 1.296 26 C 0.131 3.869 27 H 0.063 0.937 28 C 0.126 3.874 29 N -0.530 5.530 30 H 0.428 0.572 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.047 0.953 43 H 0.107 0.893 44 H -0.004 1.004 45 H 0.085 0.915 46 H 0.252 0.748 47 H 0.046 0.954 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 10.577 -3.425 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.243 4.243 4 C -0.102 4.102 5 C -0.151 4.151 6 C -0.191 4.191 7 C 0.370 3.630 8 O -0.459 6.459 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.156 4.156 12 C 0.028 3.972 13 H 0.076 0.924 14 O -0.304 6.304 15 C -0.026 4.026 16 C 0.010 3.990 17 N -0.326 5.326 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.800 3.200 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.223 1.223 26 C 0.023 3.977 27 H 0.081 0.919 28 C 0.001 3.999 29 N -0.133 5.133 30 H 0.272 0.728 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.014 0.986 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.041 10.561 -3.308 24.664 hybrid contribution 1.803 -1.214 0.822 2.323 sum -20.239 9.348 -2.486 22.431 Atomic orbital electron populations 1.20587 0.84285 1.05315 1.04300 1.21228 0.95393 0.85353 1.03191 1.20826 0.90460 0.99535 1.13481 1.20195 0.96872 0.90888 1.02220 1.20333 0.94179 0.98474 1.02080 1.19711 0.83305 0.93890 1.22234 1.17685 0.87009 0.80522 0.77813 1.90780 1.33398 1.74145 1.47601 1.48226 1.17169 1.15715 1.52382 1.22246 0.86243 0.96995 0.96883 1.21931 0.97239 0.92763 1.03671 1.22328 0.93376 0.98353 0.83115 0.92372 1.87751 1.58527 1.58095 1.26036 1.23170 0.88603 0.89853 1.00938 1.21543 0.95033 0.99112 0.83328 1.44630 1.38763 1.46558 1.02640 1.19583 0.97529 1.31911 0.90009 0.91186 1.25703 0.95921 1.03006 1.00048 1.70141 1.11419 1.46699 1.29764 0.85131 0.77696 0.78374 0.78777 1.19196 1.21047 1.22321 1.21746 0.90244 0.87653 0.98040 0.91865 1.21793 0.88211 0.89692 1.00238 1.42480 1.04116 1.09445 1.57276 0.72785 0.89415 0.88120 0.89701 0.81906 0.91448 0.89552 0.93257 0.87172 0.90545 0.88827 0.86115 0.93456 0.87539 0.98575 0.89729 0.93880 0.93580 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.41 71.24 0.74 0.19 16 2 C 0.07 1.03 7.13 41.34 0.29 1.32 16 3 C -0.22 -4.24 10.66 22.01 0.23 -4.01 16 4 C -0.09 -2.49 6.20 -19.56 -0.12 -2.61 16 5 C -0.09 -2.48 10.15 71.24 0.72 -1.76 16 6 C -0.08 -2.29 6.33 40.35 0.26 -2.03 16 7 C 0.58 21.45 7.54 86.45 0.65 22.11 16 8 O -0.58 -26.80 14.70 -4.34 -0.06 -26.86 16 9 N -0.60 -20.74 2.96 -823.62 -2.44 -23.18 16 10 C 0.10 2.35 5.78 86.34 0.50 2.85 16 11 C -0.12 -2.53 5.74 30.54 0.18 -2.35 16 12 C 0.09 2.85 2.82 30.55 0.09 2.93 16 13 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 14 O -0.39 -13.40 9.71 -148.98 -1.45 -14.84 16 15 C 0.05 1.94 6.97 72.06 0.50 2.45 16 16 C 0.14 6.54 5.04 86.33 0.43 6.97 16 17 N -0.60 -30.41 2.73 -672.39 -1.83 -32.24 16 18 C -0.26 -14.47 9.76 84.03 0.82 -13.65 16 19 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 20 C -0.05 -2.91 5.04 84.86 0.43 -2.48 16 21 N -0.93 -55.13 10.69 21.65 0.23 -54.89 16 22 Si 0.97 45.30 29.58 68.60 2.03 47.33 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 C 0.13 5.51 2.96 44.95 0.13 5.64 16 27 H 0.06 2.74 7.99 -2.39 -0.02 2.72 16 28 C 0.13 5.46 5.66 86.43 0.49 5.95 16 29 N -0.53 -10.10 4.75 -171.93 -0.82 -10.92 16 30 H 0.43 6.01 6.72 -92.71 -0.62 5.38 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.63 6.46 -2.39 -0.02 1.62 16 38 H 0.11 1.98 3.61 -2.39 -0.01 1.97 16 39 H 0.08 1.95 8.00 -2.38 -0.02 1.93 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 43 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.00 -0.20 7.19 -2.39 -0.02 -0.22 16 45 H 0.08 4.58 5.64 -2.39 -0.01 4.57 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.05 2.39 7.01 -2.39 -0.02 2.37 16 48 H 0.05 2.31 6.67 -2.39 -0.02 2.30 16 Total: -1.00 -75.97 369.53 2.37 -73.60 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.36 Total: 20.47 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.35 Total: 21.52 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -4.86 Total: -121.23 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.51 Total: -41.70 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.97 2.37 -73.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074280187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.815 kcal (2) G-P(sol) polarization free energy of solvation -75.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds