Wall clock time and date at job start Tue Mar 31 2020 17:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38093 * 119.58151 * 2 1 4 4 C 1.38789 * 119.28539 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.75807 * 180.02562 * 4 3 2 6 6 C 1.38428 * 118.48562 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.44500 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46944 * 89.99635 * 7 6 4 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.09003 * 110.88828 * 31.39407 * 11 10 8 13 13 C 1.54916 * 111.00526 * 267.47216 * 11 10 8 14 14 N 1.47421 * 104.83435 * 204.91702 * 13 11 10 15 15 C 1.36943 * 125.65042 * 204.08765 * 14 13 11 16 16 H 1.07997 * 119.99746 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99872 * 0.05020 * 15 14 13 18 18 N 1.31625 * 119.99847 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00082 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47105 * 59.99937 * 19 17 15 21 21 H 1.48507 * 109.47310 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47215 * 300.00176 * 19 17 15 23 23 C 1.47024 * 108.70119 * 24.12897 * 14 13 11 24 24 C 1.54320 * 107.27409 * 358.93990 * 23 14 13 25 25 H 1.09005 * 110.71850 * 96.16891 * 24 23 14 26 26 C 1.52993 * 110.72406 * 219.44481 * 24 23 14 27 27 C 1.38884 * 119.11061 * 0.25137 * 6 4 3 28 28 O 1.35675 * 119.68056 * 179.72706 * 27 6 4 29 29 N 1.31929 * 119.58456 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46519 * 90.00367 * 1 2 3 31 31 H 1.09000 * 109.47289 * 210.00037 * 1 2 3 32 32 H 1.08998 * 109.46975 * 330.00932 * 1 2 3 33 33 H 1.07997 * 120.36026 * 359.94940 * 3 2 1 34 34 H 1.08996 * 109.47206 * 269.98030 * 5 4 3 35 35 H 1.08997 * 109.47062 * 29.98165 * 5 4 3 36 36 H 1.09003 * 109.46802 * 149.97989 * 5 4 3 37 37 H 1.09003 * 109.46601 * 330.00075 * 7 6 4 38 38 H 1.08993 * 109.46922 * 210.00375 * 7 6 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.36483 * 323.75950 * 13 11 10 41 41 H 1.09007 * 110.36437 * 86.07790 * 13 11 10 42 42 H 0.97006 * 119.99869 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.88273 * 239.52156 * 23 14 13 44 44 H 1.09002 * 109.88091 * 118.35858 * 23 14 13 45 45 H 1.08993 * 109.47547 * 173.52162 * 26 24 23 46 46 H 1.09004 * 109.46875 * 293.51994 * 26 24 23 47 47 H 1.08998 * 109.47216 * 53.51721 * 26 24 23 48 48 H 0.96702 * 113.99710 * 89.99814 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3540 2.4847 0.0011 6 6 4.2305 -0.0263 0.0016 7 6 5.7363 -0.0856 0.0016 8 6 6.2382 -0.1041 1.4225 9 8 5.4507 -0.0727 2.3443 10 7 7.5623 -0.1565 1.6687 11 6 8.0505 -0.1684 3.0499 12 1 7.3396 -0.6666 3.7091 13 6 8.3543 1.2682 3.5439 14 7 9.3563 1.0962 4.6115 15 6 9.5891 1.9739 5.6365 16 1 10.3494 1.7559 6.3719 17 6 8.8474 3.1434 5.7307 18 7 7.9207 3.4090 4.8345 19 14 9.1653 4.3410 7.1285 20 1 10.5722 4.8124 7.0662 21 1 8.2486 5.5026 7.0034 22 1 8.9285 3.6604 8.4270 23 6 10.0650 -0.1733 4.3928 24 6 9.4506 -0.8311 3.1393 25 1 10.0431 -0.6015 2.2536 26 6 9.3222 -2.3437 3.3294 27 6 3.4802 -1.1951 -0.0032 28 8 4.1092 -2.3972 -0.0079 29 7 2.1584 -1.1473 0.0005 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6478 2.1357 -0.0008 34 1 4.5421 2.7961 -1.0263 35 1 3.7786 3.2550 0.5146 36 1 5.3035 2.3368 0.5156 37 1 6.1343 0.7890 -0.5130 38 1 6.0643 -0.9896 -0.5114 39 1 8.1921 -0.1820 0.9315 40 1 8.7640 1.8696 2.7324 41 1 7.4514 1.7313 3.9420 42 1 7.4022 4.2261 4.9005 43 1 9.9325 -0.8253 5.2562 44 1 11.1256 0.0177 4.2291 45 1 8.7834 -2.7718 2.4842 46 1 10.3159 -2.7879 3.3895 47 1 8.7762 -2.5492 4.2501 48 1 4.2914 -2.7491 0.8742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080315637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:41 Heat of formation + Delta-G solvation = -25.637726 kcal Electronic energy + Delta-G solvation = -29311.763945 eV Core-core repulsion = 25367.343049 eV Total energy + Delta-G solvation = -3944.420896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90738 -39.37551 -37.56445 -37.28087 -34.78324 -33.91437 -32.67963 -31.95969 -30.42805 -30.35020 -27.96587 -27.64320 -25.93961 -25.52042 -23.59815 -22.73979 -21.24903 -20.41582 -20.10715 -19.45303 -18.36821 -17.29533 -16.94655 -16.81636 -16.07547 -15.64420 -15.18406 -14.92333 -14.66700 -14.24261 -13.90921 -13.72296 -13.53764 -13.32019 -13.07524 -13.01002 -12.88888 -12.80937 -12.52144 -12.40857 -12.31959 -11.97376 -11.92946 -11.72966 -11.59516 -11.54648 -11.24529 -11.09822 -10.78846 -10.65394 -10.40661 -10.00769 -9.80769 -9.79196 -9.63621 -9.46257 -9.34611 -8.66396 -8.64678 -8.46915 -6.85342 -5.64880 -3.08312 0.94311 1.17711 2.93120 3.27894 3.40355 3.44343 3.45956 3.55211 3.81746 4.39887 4.48665 4.54469 4.78227 4.81162 5.00068 5.11081 5.20033 5.27401 5.29262 5.31058 5.35387 5.42407 5.42967 5.51103 5.52137 5.56487 5.68556 5.73779 5.81074 5.94651 5.97973 6.02546 6.05223 6.13976 6.22231 6.26287 6.36004 6.46389 6.50813 6.64814 6.78292 6.93627 7.42209 7.43872 7.60424 7.81711 7.91093 7.91787 8.35808 8.56688 9.20266 9.81567 10.44719 11.37925 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003274 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.839408 B = 8550.330374 C =10057.322173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.148 3.852 3 C -0.183 4.183 4 C -0.008 4.008 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.099 4.099 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.119 3.881 12 H 0.091 0.909 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.915 3.085 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.073 0.927 26 C -0.137 4.137 27 C 0.329 3.671 28 O -0.484 6.484 29 N -0.509 5.509 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.395 0.605 40 H 0.012 0.988 41 H 0.111 0.889 42 H 0.253 0.747 43 H 0.027 0.973 44 H 0.023 0.977 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -7.405 -13.973 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.010 3.990 3 C -0.203 4.203 4 C -0.015 4.015 5 C -0.178 4.178 6 C -0.135 4.135 7 C -0.139 4.139 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.363 5.363 11 C 0.014 3.986 12 H 0.109 0.891 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.014 3.986 24 C -0.131 4.131 25 H 0.092 0.908 26 C -0.194 4.194 27 C 0.150 3.850 28 O -0.291 6.291 29 N -0.229 5.229 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.228 0.772 40 H 0.030 0.970 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.693 -7.925 -13.795 18.130 hybrid contribution 1.178 1.263 0.813 1.909 sum -7.516 -6.662 -12.982 16.413 Atomic orbital electron populations 1.20718 0.88661 1.03600 1.02986 1.20929 0.96620 0.87233 0.94190 1.21796 0.93964 0.99330 1.05190 1.20099 0.93689 0.94970 0.92761 1.20896 1.00817 0.93437 1.02642 1.20108 0.95520 0.92789 1.05090 1.20552 0.91868 1.05602 0.95892 1.20331 0.82627 0.76620 0.90597 1.90747 1.55173 1.48826 1.46060 1.45877 1.06545 1.74783 1.09100 1.22703 0.93944 1.00581 0.81366 0.89050 1.22218 0.96128 0.89482 0.89836 1.44386 1.40113 1.19472 1.28976 1.19020 1.16092 0.98246 1.02112 0.90411 1.24809 0.98605 0.98230 0.98879 1.69794 1.25221 1.26030 1.35613 0.86151 0.77277 0.80472 0.81567 1.21224 1.21556 1.21099 1.21349 0.94960 0.88534 0.93725 1.22428 0.96472 0.94806 0.99399 0.90842 1.21733 1.01164 0.95014 1.01529 1.18780 0.86591 0.84810 0.94802 1.84664 1.76585 1.33610 1.34256 1.66939 1.09513 1.30730 1.15710 0.90429 0.90455 0.90500 0.84523 0.90333 0.90466 0.90342 0.87740 0.87421 0.77198 0.96995 0.87150 0.93675 0.95500 0.95890 0.93092 0.92896 0.92527 0.74028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.54 16 2 C 0.15 1.86 6.78 -82.60 -0.56 1.30 16 3 C -0.18 -2.18 9.44 -39.43 -0.37 -2.55 16 4 C -0.01 -0.10 5.91 -104.35 -0.62 -0.72 16 5 C -0.12 -1.37 9.28 36.00 0.33 -1.04 16 6 C -0.13 -1.80 4.41 -104.31 -0.46 -2.26 16 7 C -0.10 -1.16 4.96 -29.04 -0.14 -1.31 16 8 C 0.51 8.00 7.51 -10.99 -0.08 7.91 16 9 O -0.53 -10.77 15.68 5.55 0.09 -10.68 16 10 N -0.71 -10.59 5.20 -51.72 -0.27 -10.86 16 11 C 0.12 2.23 2.87 -65.78 -0.19 2.04 16 12 H 0.09 1.93 7.45 -51.93 -0.39 1.54 16 13 C 0.15 3.62 5.58 -2.53 -0.01 3.60 16 14 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 15 C -0.23 -6.33 10.27 -15.06 -0.15 -6.48 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -27.03 10.09 55.49 0.56 -26.47 16 19 Si 0.92 22.19 29.55 -169.99 -5.02 17.16 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.14 2.87 6.84 -3.07 -0.02 2.84 16 24 C -0.11 -1.82 3.19 -88.79 -0.28 -2.10 16 25 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 26 C -0.14 -1.83 9.16 37.15 0.34 -1.48 16 27 C 0.33 4.77 7.72 -17.12 -0.13 4.63 16 28 O -0.48 -6.18 12.62 -18.73 -0.24 -6.42 16 29 N -0.51 -7.55 10.30 -9.55 -0.10 -7.64 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.08 1.02 6.55 -51.93 -0.34 0.68 16 37 H 0.10 1.03 6.81 -51.93 -0.35 0.67 16 38 H 0.11 1.06 7.54 -51.93 -0.39 0.67 16 39 H 0.39 4.56 8.57 -40.82 -0.35 4.21 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 3.16 5.87 -51.93 -0.31 2.86 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.55 7.77 -51.93 -0.40 0.14 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 48 H 0.40 3.99 9.06 45.56 0.41 4.40 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -35.34 390.78 -8.47 -43.81 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.72 Total: 7.69 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.08 Total: 3.51 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.38 Total: -60.96 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.15 Total: -17.10 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.34 -8.47 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080315637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.173 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds