Wall clock time and date at job start Tue Mar 31 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 H 1.09002 * 110.77903 * 26.76014 * 3 2 1 5 5 C 1.54320 * 110.72255 * 263.52028 * 3 2 1 6 6 N 1.47023 * 107.27496 * 219.44462 * 5 3 2 7 7 C 1.36932 * 125.64780 * 178.99706 * 6 5 3 8 8 H 1.08007 * 119.99525 * 179.97438 * 7 6 5 9 9 C 1.38814 * 120.00302 * 359.97282 * 7 6 5 10 10 N 1.31608 * 119.99825 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99904 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47121 * 119.99856 * 11 9 7 14 14 H 1.48499 * 109.47027 * 239.99966 * 11 9 7 15 15 C 1.47474 * 108.71890 * 358.97381 * 6 5 3 16 16 C 1.54912 * 104.81012 * 24.06955 * 15 6 5 17 17 H 1.09002 * 110.99782 * 81.14009 * 16 15 6 18 18 N 1.46502 * 111.00142 * 204.94735 * 16 15 6 19 19 C 1.34779 * 120.00073 * 270.41968 * 18 16 15 20 20 O 1.21548 * 119.99772 * 0.02562 * 19 18 16 21 21 C 1.47836 * 120.00060 * 180.02562 * 19 18 16 22 22 C 1.40029 * 120.55793 * 270.00372 * 21 19 18 23 23 C 1.50696 * 120.85560 * 0.04078 * 22 21 19 24 24 C 1.38362 * 118.28648 * 180.02562 * 22 21 19 25 25 C 1.38352 * 119.30187 * 359.97438 * 24 22 21 26 26 C 1.50703 * 119.45757 * 179.97438 * 25 24 22 27 27 N 1.31926 * 121.08184 * 0.27314 * 25 24 22 28 28 C 1.31692 * 121.87907 * 359.43544 * 27 25 24 29 29 C 1.50701 * 119.71972 * 180.28869 * 28 27 25 30 30 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47070 * 299.99914 * 1 2 3 32 32 H 1.09001 * 109.46815 * 60.00003 * 1 2 3 33 33 H 1.09005 * 109.88184 * 338.86365 * 5 3 2 34 34 H 1.09002 * 109.88299 * 100.02509 * 5 3 2 35 35 H 0.97002 * 119.99988 * 180.02562 * 10 9 7 36 36 H 1.09001 * 110.34612 * 265.24984 * 15 6 5 37 37 H 1.08996 * 110.40372 * 142.91921 * 15 6 5 38 38 H 0.96992 * 119.99530 * 90.42254 * 18 16 15 39 39 H 1.08999 * 109.46923 * 269.97791 * 23 22 21 40 40 H 1.08999 * 109.47565 * 29.98126 * 23 22 21 41 41 H 1.09010 * 109.46783 * 149.98086 * 23 22 21 42 42 H 1.07995 * 120.34788 * 179.97438 * 24 22 21 43 43 H 1.09002 * 109.47152 * 90.00007 * 26 25 24 44 44 H 1.09001 * 109.46980 * 330.00107 * 26 25 24 45 45 H 1.09004 * 109.47113 * 210.00088 * 26 25 24 46 46 H 1.08998 * 109.46957 * 270.27000 * 29 28 27 47 47 H 1.08995 * 109.46854 * 30.26951 * 29 28 27 48 48 H 1.08999 * 109.46954 * 150.27023 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3812 1.7379 -1.4341 6 7 3.6687 2.4438 -1.3581 7 6 4.3540 2.9705 -2.4201 8 1 5.2963 3.4731 -2.2589 9 6 3.8377 2.8585 -3.7038 10 7 2.6892 2.2465 -3.9000 11 14 4.7730 3.5765 -5.1526 12 1 6.0266 4.2084 -4.6683 13 1 5.1031 2.4941 -6.1141 14 1 3.9326 4.5983 -5.8269 15 6 4.0999 2.4912 0.0514 16 6 3.3816 1.2956 0.7257 17 1 3.9156 0.3638 0.5396 18 7 3.2167 1.5250 2.1632 19 6 4.1767 1.1306 3.0231 20 8 5.1795 0.5849 2.6057 21 6 4.0101 1.3616 4.4737 22 6 4.4685 2.5461 5.0633 23 6 5.1400 3.6117 4.2359 24 6 4.2886 2.7131 6.4249 25 6 3.6673 1.7144 7.1534 26 6 3.4701 1.8923 8.6368 27 7 3.2498 0.6063 6.5717 28 6 3.3930 0.4033 5.2784 29 6 2.8922 -0.8781 4.6634 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.4769 0.8600 -2.0731 34 1 1.6155 2.4052 -1.8298 35 1 2.3286 2.1679 -4.7971 36 1 3.7889 3.4291 0.5116 37 1 5.1811 2.3731 0.1222 38 1 2.4167 1.9608 2.4961 39 1 6.2143 3.4291 4.2109 40 1 4.7436 3.5873 3.2208 41 1 4.9478 4.5896 4.6776 42 1 4.6297 3.6136 6.9140 43 1 2.5105 2.3757 8.8204 44 1 4.2719 2.5122 9.0381 45 1 3.4853 0.9178 9.1249 46 1 3.6835 -1.6273 4.6895 47 1 2.0314 -1.2391 5.2262 48 1 2.5994 -0.6948 3.6296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081966600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:26 Heat of formation + Delta-G solvation = -46.875843 kcal Electronic energy + Delta-G solvation = -29402.138607 eV Core-core repulsion = 25456.796757 eV Total energy + Delta-G solvation = -3945.341850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99699 -40.68801 -39.50128 -37.52359 -35.68779 -35.27509 -34.78258 -33.61229 -30.70989 -30.11318 -29.29138 -28.66442 -28.05985 -27.51025 -26.05889 -23.77808 -22.44564 -22.21116 -21.98588 -21.38614 -19.34710 -18.66331 -18.10130 -17.98504 -17.26073 -16.73188 -16.21426 -15.90212 -15.88865 -15.75671 -15.58095 -15.42253 -15.06556 -14.71863 -14.42621 -14.30627 -14.13622 -14.05920 -13.91175 -13.72885 -13.63374 -13.22095 -13.17834 -13.01391 -12.98787 -12.79814 -12.72230 -12.63773 -12.59710 -12.33822 -12.04453 -11.88466 -11.67702 -11.40051 -10.79438 -10.66726 -10.52977 -10.50611 -10.18409 -9.82663 -8.98261 -7.88438 -5.26534 -0.18045 0.14146 1.37412 1.45549 1.47098 1.57267 1.90475 2.45372 2.55849 2.74722 3.13917 3.31309 3.44048 3.48691 3.57721 3.61110 3.84037 3.88766 4.04582 4.07769 4.29431 4.34080 4.36652 4.41981 4.48933 4.54808 4.57646 4.58299 4.61815 4.63887 4.70035 4.79812 4.83755 4.87015 4.90841 4.96665 5.06820 5.14489 5.18461 5.22089 5.27806 5.34962 5.41237 5.64850 5.65714 6.12210 6.29200 6.35281 6.89176 7.02799 7.05330 7.68481 8.30839 9.21330 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.003028 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.574176 B = 9243.727594 C =10334.473302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.077 3.923 4 H 0.096 0.904 5 C 0.175 3.825 6 N -0.621 5.621 7 C -0.245 4.245 8 H 0.084 0.916 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.981 3.019 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.288 1.288 15 C 0.133 3.867 16 C 0.149 3.851 17 H 0.077 0.923 18 N -0.692 5.692 19 C 0.581 3.419 20 O -0.570 6.570 21 C -0.206 4.206 22 C -0.004 4.004 23 C -0.125 4.125 24 C -0.176 4.176 25 C 0.140 3.860 26 C -0.102 4.102 27 N -0.507 5.507 28 C 0.164 3.836 29 C -0.109 4.109 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.249 0.751 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.414 0.586 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.175 0.825 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 1.855 24.992 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.114 0.886 5 C 0.049 3.951 6 N -0.349 5.349 7 C -0.373 4.373 8 H 0.102 0.898 9 C -0.256 4.256 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.215 1.215 15 C 0.006 3.994 16 C 0.043 3.957 17 H 0.096 0.904 18 N -0.342 5.342 19 C 0.367 3.633 20 O -0.448 6.448 21 C -0.212 4.212 22 C -0.012 4.012 23 C -0.181 4.181 24 C -0.195 4.195 25 C 0.003 3.997 26 C -0.159 4.159 27 N -0.218 5.218 28 C 0.026 3.974 29 C -0.166 4.166 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.251 0.749 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.193 0.807 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.457 0.677 24.985 25.232 hybrid contribution 0.322 0.988 -1.950 2.210 sum -3.134 1.665 23.035 23.307 Atomic orbital electron populations 1.22995 0.79287 1.03967 1.00724 1.87895 1.21769 1.26855 1.94920 1.23479 0.93452 0.85353 0.95901 0.88638 1.21288 0.87203 0.94758 0.91804 1.44531 1.21964 1.66379 1.02000 1.19477 1.02684 1.29366 0.85792 0.89837 1.25669 0.98448 1.01458 0.99984 1.70158 1.20545 1.48390 1.20645 0.84981 0.78000 0.77231 0.78929 1.19021 1.22037 1.21451 1.21917 0.97276 0.95576 0.84608 1.21919 0.95949 0.98700 0.79123 0.90437 1.45746 1.22382 1.60712 1.05405 1.18272 0.82272 0.76787 0.85970 1.90807 1.30539 1.43904 1.79566 1.20554 1.08358 0.98794 0.93461 1.20591 0.92559 0.92840 0.95201 1.20983 1.00753 0.97489 0.98856 1.22104 1.02414 1.02375 0.92629 1.22101 0.90703 0.88131 0.98770 1.20868 1.04544 1.04075 0.86431 1.67444 1.20759 1.23271 1.10318 1.21417 0.91892 0.95085 0.89012 1.20809 1.02702 0.92734 1.00333 0.88039 0.91829 0.94575 0.96359 0.95856 0.94202 0.93829 0.94484 0.74926 0.89987 0.92306 0.87309 0.80730 0.88657 0.88086 0.90626 0.90124 0.88389 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.13 10.43 -148.98 -1.55 -15.69 16 3 C 0.08 2.86 3.08 31.78 0.10 2.96 16 4 H 0.10 2.92 7.69 -2.39 -0.02 2.90 16 5 C 0.18 8.71 5.15 86.73 0.45 9.16 16 6 N -0.62 -32.46 3.40 -691.85 -2.35 -34.81 16 7 C -0.24 -13.90 10.28 84.03 0.86 -13.03 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 10 N -0.95 -57.09 10.31 21.65 0.22 -56.86 16 11 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 C 0.13 5.64 6.93 86.85 0.60 6.24 16 16 C 0.15 5.57 3.09 46.38 0.14 5.72 16 17 H 0.08 3.41 7.63 -2.39 -0.02 3.39 16 18 N -0.69 -19.99 5.21 -438.83 -2.29 -22.28 16 19 C 0.58 18.24 4.35 86.78 0.38 18.62 16 20 O -0.57 -23.11 16.80 -3.87 -0.06 -23.17 16 21 C -0.21 -5.37 5.65 -19.99 -0.11 -5.48 16 22 C 0.00 -0.08 5.95 -19.40 -0.12 -0.20 16 23 C -0.12 -2.30 9.69 71.23 0.69 -1.61 16 24 C -0.18 -2.79 9.43 22.33 0.21 -2.58 16 25 C 0.14 2.46 6.78 42.57 0.29 2.75 16 26 C -0.10 -0.98 10.16 71.24 0.72 -0.25 16 27 N -0.51 -11.64 10.17 -171.05 -1.74 -13.38 16 28 C 0.16 4.09 6.82 42.89 0.29 4.38 16 29 C -0.11 -2.46 9.79 71.24 0.70 -1.76 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.02 1.06 7.30 -2.38 -0.02 1.04 16 34 H 0.02 1.26 7.50 -2.39 -0.02 1.24 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.41 9.36 8.52 -92.71 -0.79 8.57 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.31 7.19 -2.39 -0.02 1.29 16 41 H 0.11 1.30 8.10 -2.38 -0.02 1.28 16 42 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 45 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.07 1.69 7.07 -2.39 -0.02 1.67 16 Total: -1.00 -76.61 395.34 1.33 -75.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.17 Total: 19.10 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 6.90 Total: 23.70 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -6.15 Total: -127.33 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.62 Total: -38.86 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.61 1.33 -75.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081966600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.408 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds