Wall clock time and date at job start Tue Mar 31 2020 17:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37996 * 120.81796 * 2 1 4 4 C 1.39128 * 119.26046 * 180.02562 * 3 2 1 5 5 O 1.35504 * 119.52052 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95189 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79813 * 0.02562 * 6 4 3 8 8 C 1.50693 * 119.68271 * 180.27116 * 7 6 4 9 9 C 1.39565 * 120.62486 * 359.97438 * 7 6 4 10 10 C 1.47617 * 120.49476 * 179.97438 * 9 7 6 11 11 O 1.21583 * 120.00120 * 90.00238 * 10 9 7 12 12 N 1.34777 * 119.99683 * 270.00101 * 10 9 7 13 13 C 1.46509 * 119.99541 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46757 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.43617 * 307.53879 * 14 13 12 16 16 C 1.54898 * 110.48796 * 70.22699 * 14 13 12 17 17 C 1.54891 * 102.74813 * 156.61761 * 16 14 13 18 18 C 1.54266 * 104.19521 * 322.05456 * 17 16 14 19 19 H 1.09003 * 110.07081 * 142.91826 * 18 17 16 20 20 N 1.46496 * 110.03284 * 264.32737 * 18 17 16 21 21 C 1.36939 * 119.99529 * 272.16546 * 20 18 17 22 22 H 1.07992 * 120.00634 * 0.02562 * 21 20 18 23 23 C 1.38823 * 119.99444 * 180.02562 * 21 20 18 24 24 N 1.31609 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99564 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47294 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46971 * 120.00052 * 25 23 21 28 28 H 1.48502 * 109.46887 * 239.99732 * 25 23 21 29 29 C 1.53875 * 106.59794 * 23.61459 * 18 17 16 30 30 H 1.09002 * 109.47415 * 269.97978 * 1 2 3 31 31 H 1.09000 * 109.46660 * 29.97998 * 1 2 3 32 32 H 1.09004 * 109.46809 * 149.97657 * 1 2 3 33 33 H 1.08002 * 120.37137 * 0.04395 * 3 2 1 34 34 H 0.96699 * 113.99740 * 90.00664 * 5 4 3 35 35 H 1.09003 * 109.47467 * 269.71765 * 8 7 6 36 36 H 1.09001 * 109.47550 * 29.72695 * 8 7 6 37 37 H 1.09004 * 109.46619 * 149.72315 * 8 7 6 38 38 H 0.96996 * 120.00359 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.46650 * 299.99838 * 13 12 10 40 40 H 1.09000 * 109.47340 * 59.99866 * 13 12 10 41 41 H 1.09000 * 110.75004 * 274.93134 * 16 14 13 42 42 H 1.08998 * 110.75383 * 38.29980 * 16 14 13 43 43 H 1.09000 * 110.48253 * 203.37900 * 17 16 14 44 44 H 1.08999 * 110.59869 * 80.79035 * 17 16 14 45 45 H 0.96998 * 120.00364 * 92.17389 * 20 18 17 46 46 H 0.97003 * 119.99857 * 179.97438 * 24 23 21 47 47 H 1.09005 * 110.02872 * 240.70804 * 29 18 17 48 48 H 1.09001 * 110.03258 * 119.28632 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2548 -0.0066 -0.0005 7 6 3.6205 -1.1601 -0.0005 8 6 4.4081 -2.4448 0.0056 9 6 2.2256 -1.2043 0.0000 10 6 1.5172 -2.4994 -0.0006 11 8 1.2258 -3.0335 1.0521 12 7 1.1934 -3.0898 -1.1681 13 6 0.4898 -4.3749 -1.1686 14 6 0.2441 -4.8211 -2.6113 15 1 -0.2458 -4.0284 -3.1766 16 6 1.5768 -5.2289 -3.2871 17 6 1.1099 -6.1783 -4.4184 18 6 -0.0540 -6.9720 -3.7899 19 1 -0.8327 -7.1454 -4.5327 20 7 0.4346 -8.2505 -3.2676 21 6 0.4872 -9.3484 -4.0843 22 1 0.1689 -9.2718 -5.1134 23 6 0.9498 -10.5601 -3.5892 24 7 1.3382 -10.6533 -2.3352 25 14 1.0222 -12.0576 -4.7035 26 1 0.5347 -11.6913 -6.0575 27 1 2.4243 -12.5384 -4.7960 28 1 0.1660 -13.1336 -4.1428 29 6 -0.6046 -6.1090 -2.6409 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6936 2.1314 0.0007 34 1 4.5077 2.6448 0.8822 35 1 4.5980 -2.7596 -1.0205 36 1 5.3567 -2.2871 0.5188 37 1 3.8391 -3.2172 0.5232 38 1 1.4261 -2.6640 -2.0079 39 1 1.0962 -5.1213 -0.6553 40 1 -0.4652 -4.2666 -0.6545 41 1 2.0835 -4.3563 -3.6996 42 1 2.2219 -5.7546 -2.5832 43 1 1.9169 -6.8508 -4.7093 44 1 0.7615 -5.6072 -5.2789 45 1 0.7208 -8.3193 -2.3433 46 1 1.6610 -11.5001 -1.9892 47 1 -0.5082 -6.6416 -1.6947 48 1 -1.6501 -5.8631 -2.8266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086881494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:40 Heat of formation + Delta-G solvation = -48.428736 kcal Electronic energy + Delta-G solvation = -28321.259674 eV Core-core repulsion = 24375.850486 eV Total energy + Delta-G solvation = -3945.409189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30537 -39.63525 -38.21438 -37.46313 -34.96147 -34.72177 -33.32146 -32.20334 -30.66607 -29.11784 -28.49062 -28.13570 -27.20075 -24.75606 -23.53475 -23.12322 -21.73260 -20.98080 -19.97711 -19.23442 -18.83554 -17.89698 -17.60299 -17.10645 -16.45628 -16.04423 -15.49100 -15.05538 -14.73001 -14.54460 -14.48750 -14.08159 -13.77667 -13.72735 -13.54274 -13.46275 -13.24458 -13.06401 -12.66972 -12.63812 -12.50378 -12.28695 -12.18195 -12.01948 -11.43486 -11.22417 -10.88750 -10.77066 -10.60843 -10.52062 -10.38966 -10.27316 -10.17555 -9.97900 -9.93216 -9.75996 -9.62945 -9.18894 -9.18533 -8.88774 -6.93599 -5.76362 -3.04565 0.35708 0.71106 2.32955 2.87986 2.96173 3.31303 3.42976 3.48747 3.50940 4.03025 4.08888 4.40312 4.59059 4.59512 4.74827 4.82913 4.90043 4.93158 5.06883 5.08178 5.10862 5.15824 5.32461 5.45393 5.52812 5.54287 5.57316 5.67767 5.69731 5.73733 5.75821 5.88862 5.97891 6.02787 6.05225 6.09352 6.18632 6.31049 6.32751 6.45117 6.64352 6.73627 6.90145 7.00286 7.09173 7.27769 7.46192 7.71917 7.97173 8.42938 9.53690 10.13153 10.46956 11.46296 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.002158 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.646691 B =12973.201577 C =13328.750446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.012 3.988 3 C -0.198 4.198 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.198 3.802 8 C -0.116 4.116 9 C -0.192 4.192 10 C 0.570 3.430 11 O -0.527 6.527 12 N -0.716 5.716 13 C 0.124 3.876 14 C -0.103 4.103 15 H 0.074 0.926 16 C -0.113 4.113 17 C -0.146 4.146 18 C 0.175 3.825 19 H 0.048 0.952 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.121 4.121 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.404 0.596 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.401 0.599 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.073 0.927 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 27.074 4.645 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.004 3.996 3 C -0.219 4.219 4 C 0.154 3.846 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.059 3.941 8 C -0.173 4.173 9 C -0.198 4.198 10 C 0.354 3.646 11 O -0.403 6.403 12 N -0.367 5.367 13 C 0.002 3.998 14 C -0.122 4.122 15 H 0.093 0.907 16 C -0.150 4.150 17 C -0.187 4.187 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.160 4.160 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.236 0.764 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.131 26.542 4.670 26.974 hybrid contribution -0.397 -0.429 -0.217 0.623 sum 0.734 26.113 4.453 26.500 Atomic orbital electron populations 1.20948 0.89237 1.03961 1.03891 1.20205 0.96973 0.90843 0.91570 1.21865 0.93735 0.99357 1.06936 1.19262 0.87050 0.85068 0.93256 1.84721 1.75997 1.34010 1.34148 1.67020 1.41859 0.97832 1.15956 1.21089 0.89147 0.93219 0.90615 1.20917 1.00683 0.91548 1.04157 1.20718 0.94902 0.94401 1.09762 1.17847 0.78572 0.83875 0.84311 1.90851 1.53639 1.64651 1.31180 1.46105 1.59152 1.23328 1.08083 1.21620 0.96831 0.83732 0.97648 1.22241 0.97893 0.98343 0.93739 0.90716 1.22505 0.95705 0.98432 0.98407 1.23119 1.01160 0.97987 0.96419 1.20796 0.93307 0.86327 0.93170 0.93398 1.42549 1.76807 1.04612 1.12208 1.19298 1.35737 0.88186 0.93716 0.91185 1.24742 1.02139 0.97873 0.96296 1.69666 1.49753 1.25174 1.13462 0.86151 0.77201 0.83371 0.79671 1.20602 1.21932 1.21923 1.22470 0.98153 0.94399 1.00983 0.89505 0.90135 0.90539 0.83585 0.73806 0.89252 0.89492 0.89812 0.76442 0.90610 0.91374 0.93004 0.91204 0.90951 0.93354 0.78263 0.93581 0.90847 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.69 36.01 0.35 -0.50 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -1.58 9.72 -39.34 -0.38 -1.96 16 4 C 0.33 3.18 7.74 -16.96 -0.13 3.05 16 5 O -0.48 -3.73 13.55 -18.20 -0.25 -3.97 16 6 N -0.51 -5.80 10.28 -9.20 -0.09 -5.89 16 7 C 0.20 2.19 6.82 -82.18 -0.56 1.63 16 8 C -0.12 -1.15 9.78 36.00 0.35 -0.79 16 9 C -0.19 -2.07 5.65 -104.82 -0.59 -2.66 16 10 C 0.57 6.91 4.33 -12.43 -0.05 6.85 16 11 O -0.53 -8.42 17.10 5.29 0.09 -8.33 16 12 N -0.72 -7.42 5.44 -61.32 -0.33 -7.75 16 13 C 0.12 1.49 4.96 -4.04 -0.02 1.47 16 14 C -0.10 -1.24 2.89 -88.96 -0.26 -1.50 16 15 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.11 -1.54 6.19 -24.73 -0.15 -1.69 16 17 C -0.15 -2.42 6.54 -25.07 -0.16 -2.59 16 18 C 0.17 3.28 3.55 -66.81 -0.24 3.04 16 19 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 20 N -0.72 -17.48 5.08 -52.34 -0.27 -17.75 16 21 C -0.24 -6.49 9.96 -15.05 -0.15 -6.64 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 25 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 C -0.12 -1.83 6.14 -25.61 -0.16 -1.99 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 32 H 0.08 0.58 7.19 -51.93 -0.37 0.20 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.40 1.07 9.06 45.56 0.41 1.48 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.91 7.07 -51.93 -0.37 0.54 16 38 H 0.40 3.37 8.42 -40.82 -0.34 3.03 16 39 H 0.08 1.06 8.02 -51.93 -0.42 0.64 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 43 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.38 9.94 7.52 -40.82 -0.31 9.64 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -34.25 396.89 -8.84 -43.09 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.80 Total: 9.91 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.87 Total: -5.29 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.03 Total: -58.63 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.16 Total: -12.30 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.25 -8.84 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086881494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.340 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds