Wall clock time and date at job start Tue Mar 31 2020 17:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37996 * 120.81796 * 2 1 4 4 C 1.39128 * 119.26046 * 180.02562 * 3 2 1 5 5 O 1.35504 * 119.52052 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95189 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79813 * 0.02562 * 6 4 3 8 8 C 1.50693 * 119.68271 * 180.27116 * 7 6 4 9 9 C 1.39565 * 120.62486 * 359.97438 * 7 6 4 10 10 C 1.47617 * 120.49476 * 179.97438 * 9 7 6 11 11 O 1.21583 * 120.00120 * 90.00238 * 10 9 7 12 12 N 1.34777 * 119.99683 * 270.00101 * 10 9 7 13 13 C 1.46509 * 119.99541 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46757 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.43617 * 307.53879 * 14 13 12 16 16 C 1.54898 * 110.48796 * 70.22699 * 14 13 12 17 17 C 1.54891 * 102.74813 * 156.61761 * 16 14 13 18 18 C 1.54266 * 104.19521 * 322.05456 * 17 16 14 19 19 H 1.09003 * 110.07081 * 142.91826 * 18 17 16 20 20 N 1.46496 * 110.03284 * 264.32737 * 18 17 16 21 21 C 1.36939 * 119.99529 * 272.16546 * 20 18 17 22 22 H 1.07992 * 120.00634 * 0.02562 * 21 20 18 23 23 C 1.38823 * 119.99444 * 180.02562 * 21 20 18 24 24 N 1.31609 * 119.99919 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99564 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47294 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46971 * 120.00052 * 25 23 21 28 28 H 1.48502 * 109.46887 * 239.99732 * 25 23 21 29 29 C 1.53875 * 106.59794 * 23.61459 * 18 17 16 30 30 H 1.09002 * 109.47415 * 269.97978 * 1 2 3 31 31 H 1.09000 * 109.46660 * 29.97998 * 1 2 3 32 32 H 1.09004 * 109.46809 * 149.97657 * 1 2 3 33 33 H 1.08002 * 120.37137 * 0.04395 * 3 2 1 34 34 H 0.96699 * 113.99740 * 90.00664 * 5 4 3 35 35 H 1.09003 * 109.47467 * 269.71765 * 8 7 6 36 36 H 1.09001 * 109.47550 * 29.72695 * 8 7 6 37 37 H 1.09004 * 109.46619 * 149.72315 * 8 7 6 38 38 H 0.96996 * 120.00359 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.46650 * 299.99838 * 13 12 10 40 40 H 1.09000 * 109.47340 * 59.99866 * 13 12 10 41 41 H 1.09000 * 110.75004 * 274.93134 * 16 14 13 42 42 H 1.08998 * 110.75383 * 38.29980 * 16 14 13 43 43 H 1.09000 * 110.48253 * 203.37900 * 17 16 14 44 44 H 1.08999 * 110.59869 * 80.79035 * 17 16 14 45 45 H 0.96998 * 120.00364 * 92.17389 * 20 18 17 46 46 H 0.97003 * 119.99857 * 179.97438 * 24 23 21 47 47 H 1.09005 * 110.02872 * 240.70804 * 29 18 17 48 48 H 1.09001 * 110.03258 * 119.28632 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2548 -0.0066 -0.0005 7 6 3.6205 -1.1601 -0.0005 8 6 4.4081 -2.4448 0.0056 9 6 2.2256 -1.2043 0.0000 10 6 1.5172 -2.4994 -0.0006 11 8 1.2258 -3.0335 1.0521 12 7 1.1934 -3.0898 -1.1681 13 6 0.4898 -4.3749 -1.1686 14 6 0.2441 -4.8211 -2.6113 15 1 -0.2458 -4.0284 -3.1766 16 6 1.5768 -5.2289 -3.2871 17 6 1.1099 -6.1783 -4.4184 18 6 -0.0540 -6.9720 -3.7899 19 1 -0.8327 -7.1454 -4.5327 20 7 0.4346 -8.2505 -3.2676 21 6 0.4872 -9.3484 -4.0843 22 1 0.1689 -9.2718 -5.1134 23 6 0.9498 -10.5601 -3.5892 24 7 1.3382 -10.6533 -2.3352 25 14 1.0222 -12.0576 -4.7035 26 1 0.5347 -11.6913 -6.0575 27 1 2.4243 -12.5384 -4.7960 28 1 0.1660 -13.1336 -4.1428 29 6 -0.6046 -6.1090 -2.6409 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6936 2.1314 0.0007 34 1 4.5077 2.6448 0.8822 35 1 4.5980 -2.7596 -1.0205 36 1 5.3567 -2.2871 0.5188 37 1 3.8391 -3.2172 0.5232 38 1 1.4261 -2.6640 -2.0079 39 1 1.0962 -5.1213 -0.6553 40 1 -0.4652 -4.2666 -0.6545 41 1 2.0835 -4.3563 -3.6996 42 1 2.2219 -5.7546 -2.5832 43 1 1.9169 -6.8508 -4.7093 44 1 0.7615 -5.6072 -5.2789 45 1 0.7208 -8.3193 -2.3433 46 1 1.6610 -11.5001 -1.9892 47 1 -0.5082 -6.6416 -1.6947 48 1 -1.6501 -5.8631 -2.8266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086881494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:39 Heat of formation + Delta-G solvation = -75.547306 kcal Electronic energy + Delta-G solvation = -28322.435624 eV Core-core repulsion = 24375.850486 eV Total energy + Delta-G solvation = -3946.585138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06723 -40.55956 -39.43839 -38.16234 -36.29582 -35.40031 -34.94711 -33.07164 -32.35033 -30.34067 -29.13152 -29.07716 -28.50173 -25.97892 -25.09309 -24.25422 -22.41619 -21.91315 -21.10222 -20.67609 -19.49231 -19.15700 -18.73766 -18.30819 -17.48535 -16.73648 -16.69425 -16.52691 -15.90063 -15.81144 -15.25425 -15.20960 -15.08982 -14.76375 -14.47643 -14.32216 -14.20928 -14.16614 -13.85102 -13.50878 -13.37116 -13.14411 -13.11573 -12.97706 -12.94647 -12.62756 -12.48590 -12.34735 -12.10638 -11.97692 -11.70935 -11.61844 -11.48478 -11.40865 -11.24207 -10.89457 -10.65753 -10.55872 -10.16619 -9.90798 -8.94611 -7.92350 -5.19280 -0.35095 0.03000 1.38966 1.47024 1.47305 1.57256 2.04567 2.26118 2.57450 2.62040 3.35565 3.39606 3.43828 3.59258 3.70245 3.81939 3.87630 3.95446 4.16876 4.22620 4.27616 4.38070 4.44183 4.52631 4.55772 4.56943 4.62067 4.63596 4.71002 4.79648 4.81736 4.86789 4.95447 4.96322 5.07372 5.09573 5.11622 5.16695 5.24669 5.30928 5.39446 5.46755 5.53113 5.60493 5.68679 6.31596 6.40755 6.53415 6.78233 7.07763 7.36227 8.17028 8.37273 9.31505 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.002158 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.646691 B =12973.201577 C =13328.750446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.013 3.987 3 C -0.188 4.188 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.114 4.114 9 C -0.207 4.207 10 C 0.577 3.423 11 O -0.572 6.572 12 N -0.700 5.700 13 C 0.132 3.868 14 C -0.083 4.083 15 H 0.111 0.889 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.161 3.839 19 H 0.043 0.957 20 N -0.734 5.734 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.969 3.031 26 H -0.265 1.265 27 H -0.296 1.296 28 H -0.295 1.295 29 C -0.116 4.116 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.178 0.822 34 H 0.424 0.576 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.415 0.585 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.051 0.949 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 30.150 3.143 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.005 3.995 3 C -0.208 4.208 4 C 0.149 3.851 5 O -0.298 6.298 6 N -0.253 5.253 7 C 0.048 3.952 8 C -0.171 4.171 9 C -0.213 4.213 10 C 0.363 3.637 11 O -0.451 6.451 12 N -0.351 5.351 13 C 0.009 3.991 14 C -0.102 4.102 15 H 0.129 0.871 16 C -0.144 4.144 17 C -0.180 4.180 18 C 0.053 3.947 19 H 0.062 0.938 20 N -0.374 5.374 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.799 3.201 26 H -0.190 1.190 27 H -0.224 1.224 28 H -0.223 1.223 29 C -0.155 4.155 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.195 0.805 34 H 0.286 0.714 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.252 0.748 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.202 0.798 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.136 29.687 3.112 29.850 hybrid contribution -0.093 -1.243 0.231 1.268 sum 0.043 28.444 3.344 28.640 Atomic orbital electron populations 1.21017 0.87675 1.04990 1.04239 1.20490 0.98073 0.90354 0.90573 1.22128 0.93053 1.00266 1.05375 1.19534 0.87903 0.84998 0.92643 1.84676 1.75896 1.33154 1.36119 1.67003 1.42684 0.98474 1.17156 1.21137 0.89424 0.93418 0.91226 1.20884 1.00544 0.91095 1.04542 1.20632 0.94831 0.94283 1.11534 1.18029 0.77795 0.84081 0.83833 1.90829 1.55578 1.65922 1.32792 1.45918 1.58330 1.22485 1.08406 1.21400 0.96570 0.83792 0.97351 1.22107 0.96463 0.97707 0.93900 0.87121 1.22449 0.96341 0.98682 0.96959 1.22955 0.98939 0.97869 0.98219 1.21142 0.94003 0.85056 0.94504 0.93846 1.42771 1.77093 1.06112 1.11433 1.19676 1.33669 0.89066 0.94075 0.90706 1.25529 1.03209 1.00824 0.97688 1.69824 1.51779 1.25396 1.15260 0.85130 0.76631 0.79800 0.78585 1.18956 1.22372 1.22289 1.22373 0.99860 0.94959 0.98307 0.89416 0.87357 0.91239 0.80458 0.71352 0.88367 0.89145 0.91346 0.74843 0.93282 0.91125 0.89708 0.93803 0.94438 0.90487 0.79773 0.94248 0.93010 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.69 71.24 0.69 -0.64 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.09 16 3 C -0.19 -2.44 9.72 22.43 0.22 -2.22 16 4 C 0.33 5.61 7.74 84.82 0.66 6.27 16 5 O -0.49 -6.43 13.55 -88.05 -1.19 -7.62 16 6 N -0.53 -11.66 10.28 -295.88 -3.04 -14.70 16 7 C 0.19 4.04 6.82 42.91 0.29 4.33 16 8 C -0.11 -2.28 9.78 71.23 0.70 -1.58 16 9 C -0.21 -4.25 5.65 -20.00 -0.11 -4.37 16 10 C 0.58 13.72 4.33 86.72 0.38 14.09 16 11 O -0.57 -18.61 17.10 -3.98 -0.07 -18.68 16 12 N -0.70 -13.49 5.44 -466.17 -2.54 -16.03 16 13 C 0.13 3.04 4.96 86.38 0.43 3.47 16 14 C -0.08 -1.80 2.89 -9.72 -0.03 -1.83 16 15 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 16 C -0.11 -2.72 6.19 31.89 0.20 -2.52 16 17 C -0.14 -4.44 6.54 31.67 0.21 -4.24 16 18 C 0.16 5.98 3.55 45.72 0.16 6.14 16 19 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 20 N -0.73 -36.46 5.08 -319.51 -1.62 -38.08 16 21 C -0.23 -12.86 9.96 84.04 0.84 -12.02 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.08 -4.66 5.50 84.87 0.47 -4.20 16 24 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 25 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 C -0.12 -3.37 6.14 31.32 0.19 -3.18 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.57 8.10 -2.39 -0.02 0.55 16 32 H 0.07 0.87 7.19 -2.38 -0.02 0.85 16 33 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.42 1.27 9.06 -74.06 -0.67 0.60 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.57 7.07 -2.39 -0.02 1.55 16 38 H 0.41 5.83 8.42 -92.71 -0.78 5.05 16 39 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.36 7.97 -2.39 -0.02 1.34 16 43 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.37 20.05 7.52 -92.71 -0.70 19.36 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.05 1.75 7.31 -2.38 -0.02 1.73 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.97 396.89 -2.14 -79.11 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -1.15 Total: 29.76 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.16 Total: -2.43 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.92 Total: -128.73 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.26 Total: -26.30 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.97 -2.14 -79.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086881494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds