Wall clock time and date at job start Tue Mar 31 2020 17:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.45884 * 2 1 4 4 C 1.38357 * 119.30186 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.85167 * 179.97438 * 4 3 2 6 6 C 1.40026 * 118.29046 * 0.02562 * 4 3 2 7 7 C 1.47832 * 120.55967 * 179.72664 * 6 4 3 8 8 O 1.21549 * 120.00417 * 89.99700 * 7 6 4 9 9 N 1.34781 * 120.00253 * 270.00115 * 7 6 4 10 10 C 1.46496 * 120.00292 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45813 * 325.00030 * 10 9 7 12 12 C 1.53043 * 109.45874 * 84.97497 * 10 9 7 13 13 C 1.53191 * 109.30991 * 181.40242 * 12 10 9 14 14 N 1.46927 * 108.76201 * 305.33635 * 13 12 10 15 15 C 1.36938 * 120.63293 * 233.59480 * 14 13 12 16 16 H 1.08001 * 119.99686 * 27.70925 * 15 14 13 17 17 C 1.38809 * 120.00293 * 207.69974 * 15 14 13 18 18 N 1.31619 * 119.99566 * 17.36061 * 17 15 14 19 19 Si 1.86799 * 120.00116 * 197.35781 * 17 15 14 20 20 H 1.48503 * 109.47156 * 60.00135 * 19 17 15 21 21 H 1.48503 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47371 * 300.00016 * 19 17 15 23 23 C 1.46928 * 118.73666 * 53.62707 * 14 13 12 24 24 C 1.53042 * 109.45914 * 205.02452 * 10 9 7 25 25 H 1.08993 * 109.50202 * 298.56715 * 24 10 9 26 26 O 1.42905 * 109.49396 * 58.66604 * 24 10 9 27 27 C 1.39521 * 118.87754 * 359.97438 * 6 4 3 28 28 C 1.50707 * 119.71132 * 179.97438 * 27 6 4 29 29 N 1.31693 * 120.57282 * 0.02562 * 27 6 4 30 30 H 1.08997 * 109.47091 * 89.99895 * 1 2 3 31 31 H 1.08995 * 109.46766 * 209.99689 * 1 2 3 32 32 H 1.08998 * 109.47202 * 329.99372 * 1 2 3 33 33 H 1.08003 * 120.34569 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47129 * 270.02303 * 5 4 3 35 35 H 1.09000 * 109.47039 * 30.02321 * 5 4 3 36 36 H 1.09001 * 109.46949 * 150.02388 * 5 4 3 37 37 H 0.97005 * 119.99112 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.49392 * 301.33534 * 12 10 9 39 39 H 1.08996 * 109.50079 * 61.42789 * 12 10 9 40 40 H 1.09005 * 109.58217 * 185.56209 * 13 12 10 41 41 H 1.08992 * 109.60193 * 65.13012 * 13 12 10 42 42 H 0.97004 * 119.99717 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.58224 * 186.60368 * 23 14 13 44 44 H 1.08993 * 109.70669 * 66.24188 * 23 14 13 45 45 H 0.96700 * 113.99372 * 179.97438 * 26 24 10 46 46 H 1.09007 * 109.46787 * 90.00534 * 28 27 6 47 47 H 1.08999 * 109.47041 * 209.99746 * 28 27 6 48 48 H 1.08995 * 109.47321 * 330.00323 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.3474 2.4926 -0.0011 6 6 4.2313 -0.0339 -0.0016 7 6 5.7083 -0.0965 -0.0083 8 8 6.3204 -0.1205 1.0415 9 7 6.3762 -0.1268 -1.1786 10 6 7.8399 -0.1883 -1.1852 11 1 8.2313 0.3869 -0.3461 12 6 8.2896 -1.6457 -1.0583 13 6 9.8202 -1.7029 -1.0303 14 7 10.3407 -1.0124 -2.2182 15 6 11.2199 -1.6393 -3.0603 16 1 11.2074 -2.7154 -3.1503 17 6 12.1271 -0.8916 -3.7983 18 7 12.3868 0.3526 -3.4563 19 14 12.9795 -1.6511 -5.2769 20 1 11.9618 -2.0675 -6.2750 21 1 13.8936 -0.6530 -5.8881 22 1 13.7611 -2.8367 -4.8427 23 6 9.9004 0.3637 -2.4849 24 6 8.3688 0.3978 -2.4962 25 1 7.9980 -0.1920 -3.3343 26 8 7.9229 1.7490 -2.6288 27 6 3.4716 -1.2042 -0.0016 28 6 4.1628 -2.5434 -0.0033 29 7 2.1559 -1.1487 -0.0010 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6443 2.1382 -0.0004 34 1 4.5338 2.8039 -1.0289 35 1 3.7721 3.2625 0.5131 36 1 5.2978 2.3455 0.5120 37 1 5.8877 -0.1072 -2.0164 38 1 7.8929 -2.0697 -0.1357 39 1 7.9193 -2.2162 -1.9100 40 1 10.1471 -2.7428 -1.0395 41 1 10.1881 -1.2100 -0.1305 42 1 13.0211 0.8750 -3.9718 43 1 10.2802 0.6874 -3.4540 44 1 10.2749 1.0270 -1.7054 45 1 8.2220 2.1842 -3.4389 46 1 4.3306 -2.8670 1.0240 47 1 3.5380 -3.2741 -0.5169 48 1 5.1197 -2.4577 -0.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090445890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:59 Heat of formation + Delta-G solvation = -42.304413 kcal Electronic energy + Delta-G solvation = -29514.134438 eV Core-core repulsion = 25568.990820 eV Total energy + Delta-G solvation = -3945.143618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99012 -39.40113 -37.82690 -35.30797 -34.40970 -34.36264 -33.92390 -32.13610 -29.75518 -29.27440 -28.87786 -27.99202 -27.40121 -25.13854 -23.03962 -22.29522 -21.73573 -21.26184 -20.28129 -19.53874 -17.76694 -17.20551 -16.81230 -16.64016 -16.11636 -15.30339 -15.04297 -14.88412 -14.60226 -14.27247 -13.90380 -13.74179 -13.55480 -13.46655 -13.44718 -13.31880 -13.13931 -12.88550 -12.68182 -12.47495 -12.31257 -12.19047 -11.99995 -11.95724 -11.83845 -11.71427 -11.25617 -10.84578 -10.83274 -10.45772 -10.25928 -10.21402 -10.03347 -9.76780 -9.62022 -9.50602 -9.34758 -8.96459 -8.81362 -8.56235 -6.81658 -5.89996 -3.33394 0.71072 1.00360 2.65494 3.22368 3.32088 3.38232 3.38954 3.45943 3.94321 4.35145 4.36634 4.38449 4.52486 4.73874 4.83417 5.10070 5.17298 5.18475 5.26774 5.27336 5.31573 5.35670 5.40942 5.42273 5.44950 5.48078 5.55478 5.63062 5.82221 5.87171 5.90254 5.94545 5.95940 6.03836 6.05898 6.17833 6.39225 6.41862 6.44969 6.66912 6.77669 6.87300 7.08151 7.41746 7.63291 7.69715 7.75794 8.04782 8.30526 8.33457 9.08269 9.71092 10.27097 11.18482 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.002765 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.333101 B =10123.416467 C =10529.691185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.185 4.185 4 C 0.002 3.998 5 C -0.124 4.124 6 C -0.184 4.184 7 C 0.570 3.430 8 O -0.533 6.533 9 N -0.706 5.706 10 C 0.161 3.839 11 H 0.089 0.911 12 C -0.140 4.140 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.073 3.927 25 H 0.052 0.948 26 O -0.573 6.573 27 C 0.173 3.827 28 C -0.111 4.111 29 N -0.490 5.490 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.256 0.744 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.376 0.624 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.212 2.019 3.477 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.205 4.205 4 C -0.006 4.006 5 C -0.181 4.181 6 C -0.189 4.189 7 C 0.354 3.646 8 O -0.409 6.409 9 N -0.355 5.355 10 C 0.058 3.942 11 H 0.107 0.893 12 C -0.181 4.181 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.021 3.979 24 C 0.012 3.988 25 H 0.070 0.930 26 O -0.378 6.378 27 C 0.034 3.966 28 C -0.168 4.168 29 N -0.201 5.201 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.048 0.952 45 H 0.223 0.777 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.362 1.219 4.731 21.914 hybrid contribution 0.993 0.667 -1.718 2.094 sum -20.369 1.886 3.013 20.677 Atomic orbital electron populations 1.20738 0.88589 1.03584 1.03226 1.21392 0.97061 0.88123 0.92781 1.21740 0.93663 0.99446 1.05620 1.20359 0.93743 0.94591 0.91908 1.20929 1.00350 0.93106 1.03673 1.20743 0.94831 0.94549 1.08825 1.17936 0.86046 0.76194 0.84387 1.90809 1.68903 1.49690 1.31527 1.46166 1.08009 1.73472 1.07805 1.21050 0.77550 0.96961 0.98649 0.89314 1.22434 0.99601 0.94656 1.01363 1.20939 0.89845 0.97185 0.90210 1.44003 1.50694 1.12237 1.24322 1.19163 1.10184 0.91660 1.17579 0.91374 1.25074 0.96920 0.96788 1.00805 1.70020 1.35932 1.09349 1.39315 0.86345 0.79077 0.78347 0.82864 1.20985 1.21584 1.20744 1.21410 0.86943 0.86751 1.02759 1.22978 0.98622 0.81876 0.95356 0.93015 1.86402 1.77412 1.27119 1.46833 1.21296 0.88860 0.94644 0.91759 1.20827 0.99970 0.92125 1.03863 1.67363 1.08831 1.29118 1.14777 0.90187 0.90325 0.90581 0.84373 0.89624 0.90564 0.90410 0.76853 0.91741 0.91895 0.92037 0.95800 0.93412 0.88797 0.95226 0.77722 0.89673 0.89864 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.16 36.01 0.37 -0.35 16 2 C 0.14 1.52 6.78 -82.51 -0.56 0.96 16 3 C -0.18 -1.85 9.43 -39.49 -0.37 -2.22 16 4 C 0.00 0.02 5.95 -103.91 -0.62 -0.59 16 5 C -0.12 -1.33 9.69 36.01 0.35 -0.98 16 6 C -0.18 -2.54 5.65 -104.82 -0.59 -3.13 16 7 C 0.57 8.97 4.32 -12.33 -0.05 8.91 16 8 O -0.53 -10.31 16.77 5.32 0.09 -10.22 16 9 N -0.71 -10.49 4.92 -54.71 -0.27 -10.76 16 10 C 0.16 2.82 2.12 -67.89 -0.14 2.68 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 13 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 14 N -0.59 -14.10 2.99 -172.32 -0.52 -14.61 16 15 C -0.26 -6.73 9.59 -15.06 -0.14 -6.88 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 19 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.15 3.34 4.94 -3.71 -0.02 3.32 16 24 C 0.07 1.31 3.14 -26.61 -0.08 1.22 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -9.30 13.16 -35.23 -0.46 -9.77 16 27 C 0.17 2.28 6.82 -82.17 -0.56 1.72 16 28 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 29 N -0.49 -6.21 10.17 -5.41 -0.06 -6.27 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.64 8.10 -51.93 -0.42 0.21 16 36 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 37 H 0.40 5.22 8.59 -40.82 -0.35 4.87 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.38 4.88 9.08 45.56 0.41 5.30 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.93 7.07 -51.93 -0.37 0.56 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -31.94 390.87 -8.91 -40.84 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.84 Total: 9.50 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.34 Total: 4.10 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.22 Total: -56.19 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.37 Total: -19.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.94 -8.91 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090445890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.460 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds