Wall clock time and date at job start Tue Mar 31 2020 17:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.45884 * 2 1 4 4 C 1.38357 * 119.30186 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.85167 * 179.97438 * 4 3 2 6 6 C 1.40026 * 118.29046 * 0.02562 * 4 3 2 7 7 C 1.47832 * 120.55967 * 179.72664 * 6 4 3 8 8 O 1.21549 * 120.00417 * 89.99700 * 7 6 4 9 9 N 1.34781 * 120.00253 * 270.00115 * 7 6 4 10 10 C 1.46496 * 120.00292 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45813 * 325.00030 * 10 9 7 12 12 C 1.53043 * 109.45874 * 84.97497 * 10 9 7 13 13 C 1.53191 * 109.30991 * 181.40242 * 12 10 9 14 14 N 1.46927 * 108.76201 * 305.33635 * 13 12 10 15 15 C 1.36938 * 120.63293 * 233.59480 * 14 13 12 16 16 H 1.08001 * 119.99686 * 27.70925 * 15 14 13 17 17 C 1.38809 * 120.00293 * 207.69974 * 15 14 13 18 18 N 1.31619 * 119.99566 * 17.36061 * 17 15 14 19 19 Si 1.86799 * 120.00116 * 197.35781 * 17 15 14 20 20 H 1.48503 * 109.47156 * 60.00135 * 19 17 15 21 21 H 1.48503 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47371 * 300.00016 * 19 17 15 23 23 C 1.46928 * 118.73666 * 53.62707 * 14 13 12 24 24 C 1.53042 * 109.45914 * 205.02452 * 10 9 7 25 25 H 1.08993 * 109.50202 * 298.56715 * 24 10 9 26 26 O 1.42905 * 109.49396 * 58.66604 * 24 10 9 27 27 C 1.39521 * 118.87754 * 359.97438 * 6 4 3 28 28 C 1.50707 * 119.71132 * 179.97438 * 27 6 4 29 29 N 1.31693 * 120.57282 * 0.02562 * 27 6 4 30 30 H 1.08997 * 109.47091 * 89.99895 * 1 2 3 31 31 H 1.08995 * 109.46766 * 209.99689 * 1 2 3 32 32 H 1.08998 * 109.47202 * 329.99372 * 1 2 3 33 33 H 1.08003 * 120.34569 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47129 * 270.02303 * 5 4 3 35 35 H 1.09000 * 109.47039 * 30.02321 * 5 4 3 36 36 H 1.09001 * 109.46949 * 150.02388 * 5 4 3 37 37 H 0.97005 * 119.99112 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.49392 * 301.33534 * 12 10 9 39 39 H 1.08996 * 109.50079 * 61.42789 * 12 10 9 40 40 H 1.09005 * 109.58217 * 185.56209 * 13 12 10 41 41 H 1.08992 * 109.60193 * 65.13012 * 13 12 10 42 42 H 0.97004 * 119.99717 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.58224 * 186.60368 * 23 14 13 44 44 H 1.08993 * 109.70669 * 66.24188 * 23 14 13 45 45 H 0.96700 * 113.99372 * 179.97438 * 26 24 10 46 46 H 1.09007 * 109.46787 * 90.00534 * 28 27 6 47 47 H 1.08999 * 109.47041 * 209.99746 * 28 27 6 48 48 H 1.08995 * 109.47321 * 330.00323 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.3474 2.4926 -0.0011 6 6 4.2313 -0.0339 -0.0016 7 6 5.7083 -0.0965 -0.0083 8 8 6.3204 -0.1205 1.0415 9 7 6.3762 -0.1268 -1.1786 10 6 7.8399 -0.1883 -1.1852 11 1 8.2313 0.3869 -0.3461 12 6 8.2896 -1.6457 -1.0583 13 6 9.8202 -1.7029 -1.0303 14 7 10.3407 -1.0124 -2.2182 15 6 11.2199 -1.6393 -3.0603 16 1 11.2074 -2.7154 -3.1503 17 6 12.1271 -0.8916 -3.7983 18 7 12.3868 0.3526 -3.4563 19 14 12.9795 -1.6511 -5.2769 20 1 11.9618 -2.0675 -6.2750 21 1 13.8936 -0.6530 -5.8881 22 1 13.7611 -2.8367 -4.8427 23 6 9.9004 0.3637 -2.4849 24 6 8.3688 0.3978 -2.4962 25 1 7.9980 -0.1920 -3.3343 26 8 7.9229 1.7490 -2.6288 27 6 3.4716 -1.2042 -0.0016 28 6 4.1628 -2.5434 -0.0033 29 7 2.1559 -1.1487 -0.0010 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6443 2.1382 -0.0004 34 1 4.5338 2.8039 -1.0289 35 1 3.7721 3.2625 0.5131 36 1 5.2978 2.3455 0.5120 37 1 5.8877 -0.1072 -2.0164 38 1 7.8929 -2.0697 -0.1357 39 1 7.9193 -2.2162 -1.9100 40 1 10.1471 -2.7428 -1.0395 41 1 10.1881 -1.2100 -0.1305 42 1 13.0211 0.8750 -3.9718 43 1 10.2802 0.6874 -3.4540 44 1 10.2749 1.0270 -1.7054 45 1 8.2220 2.1842 -3.4389 46 1 4.3306 -2.8670 1.0240 47 1 3.5380 -3.2741 -0.5169 48 1 5.1197 -2.4577 -0.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090445890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:58 Heat of formation + Delta-G solvation = -65.418928 kcal Electronic energy + Delta-G solvation = -29515.136758 eV Core-core repulsion = 25568.990820 eV Total energy + Delta-G solvation = -3946.145939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99588 -40.66557 -39.30321 -36.89864 -35.85423 -35.29575 -34.81420 -33.87299 -31.34147 -30.56859 -30.07287 -28.91528 -28.31208 -26.88176 -24.44628 -23.72664 -23.10476 -22.20365 -21.50616 -21.08447 -19.17889 -18.46747 -18.14194 -18.07042 -17.55495 -16.75388 -16.18545 -15.87762 -15.80345 -15.61641 -15.55605 -15.23801 -14.98287 -14.55594 -14.39927 -14.31289 -14.12888 -13.96505 -13.84177 -13.75437 -13.51119 -13.38026 -13.18432 -13.06158 -13.00262 -12.70386 -12.67828 -12.62408 -12.57918 -12.12083 -12.05160 -11.89692 -11.52539 -11.21573 -10.96177 -10.60258 -10.56479 -10.46244 -10.14954 -9.82874 -8.77395 -7.91377 -5.38223 -0.17985 0.13378 1.42087 1.49384 1.50238 1.57692 2.02233 2.49380 2.55726 3.08624 3.14333 3.25922 3.47141 3.58600 3.61674 3.65722 3.89404 4.01297 4.06990 4.28960 4.31672 4.32265 4.39743 4.43857 4.47944 4.54343 4.56854 4.61523 4.66992 4.69051 4.82507 4.85149 4.91362 4.94039 5.03071 5.06486 5.12704 5.14908 5.17149 5.21051 5.31644 5.37999 5.55596 5.63393 5.64978 6.32493 6.41217 6.80721 6.88683 7.08458 7.09593 7.76949 8.29805 9.15273 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.002765 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.333101 B =10123.416467 C =10529.691185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.177 4.177 4 C -0.007 4.007 5 C -0.120 4.120 6 C -0.208 4.208 7 C 0.579 3.421 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.170 3.830 11 H 0.058 0.942 12 C -0.124 4.124 13 C 0.142 3.858 14 N -0.604 5.604 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.277 1.277 23 C 0.157 3.843 24 C 0.094 3.906 25 H 0.065 0.935 26 O -0.572 6.572 27 C 0.162 3.838 28 C -0.109 4.109 29 N -0.507 5.507 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.410 0.590 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.009 0.991 42 H 0.252 0.748 43 H 0.071 0.929 44 H -0.005 1.005 45 H 0.392 0.608 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 1.953 2.473 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.015 4.015 5 C -0.176 4.176 6 C -0.213 4.213 7 C 0.365 3.635 8 O -0.454 6.454 9 N -0.342 5.342 10 C 0.066 3.934 11 H 0.076 0.924 12 C -0.164 4.164 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.396 4.396 16 H 0.090 0.910 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.797 3.203 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.203 1.203 23 C 0.030 3.970 24 C 0.033 3.967 25 H 0.083 0.917 26 O -0.379 6.379 27 C 0.024 3.976 28 C -0.166 4.166 29 N -0.218 5.218 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.192 0.808 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.014 0.986 45 H 0.241 0.759 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.373 1.145 3.705 24.680 hybrid contribution 1.853 0.741 -1.339 2.403 sum -22.520 1.886 2.366 22.723 Atomic orbital electron populations 1.20861 0.85824 1.04742 1.04448 1.22101 0.98893 0.87773 0.91054 1.22099 0.92752 1.00820 1.03944 1.20605 0.94875 0.94180 0.91797 1.20923 0.99154 0.93469 1.04086 1.20621 0.93170 0.95921 1.11567 1.18217 0.86979 0.74731 0.83582 1.90782 1.70073 1.51585 1.32981 1.45924 1.06728 1.73101 1.08428 1.20726 0.79126 0.96471 0.97123 0.92381 1.22230 0.97027 0.94830 1.02351 1.21034 0.91909 0.96959 0.88495 1.44252 1.50817 1.12613 1.25190 1.19511 1.10302 0.92096 1.17691 0.90957 1.25823 0.97910 0.97269 1.03302 1.70180 1.36794 1.10668 1.40377 0.85317 0.77984 0.77291 0.79693 1.19990 1.22170 1.20325 1.21216 0.89974 0.85647 1.00133 1.22535 0.95169 0.83051 0.95989 0.91692 1.86385 1.76988 1.26300 1.48194 1.21452 0.89332 0.94818 0.91986 1.20827 0.99828 0.92121 1.03834 1.67442 1.08415 1.30392 1.15588 0.88736 0.90582 0.88055 0.80793 0.88849 0.87864 0.93484 0.75429 0.90922 0.90506 0.91370 0.97307 0.93902 0.91025 0.98642 0.75852 0.89876 0.88508 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.16 71.24 0.72 -0.31 16 2 C 0.14 2.55 6.78 42.57 0.29 2.84 16 3 C -0.18 -2.96 9.43 22.33 0.21 -2.75 16 4 C -0.01 -0.15 5.95 -19.40 -0.12 -0.26 16 5 C -0.12 -2.38 9.69 71.24 0.69 -1.69 16 6 C -0.21 -5.57 5.65 -20.00 -0.11 -5.68 16 7 C 0.58 18.29 4.32 86.78 0.37 18.66 16 8 O -0.57 -22.90 16.77 -3.87 -0.06 -22.96 16 9 N -0.69 -20.30 4.92 -445.30 -2.19 -22.49 16 10 C 0.17 5.99 2.12 45.02 0.10 6.09 16 11 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 12 C -0.12 -4.30 5.65 30.67 0.17 -4.13 16 13 C 0.14 5.94 6.52 86.36 0.56 6.50 16 14 N -0.60 -29.47 2.99 -699.10 -2.09 -31.57 16 15 C -0.27 -14.07 9.59 84.03 0.81 -13.26 16 16 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 17 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 18 N -0.93 -53.50 11.19 21.65 0.24 -53.26 16 19 Si 0.97 43.06 29.59 68.60 2.03 45.09 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 C 0.16 7.30 4.94 86.36 0.43 7.72 16 24 C 0.09 3.35 3.14 30.67 0.10 3.45 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 O -0.57 -18.22 13.16 -148.98 -1.96 -20.18 16 27 C 0.16 4.12 6.82 42.89 0.29 4.42 16 28 C -0.11 -2.45 9.79 71.24 0.70 -1.75 16 29 N -0.51 -11.98 10.17 -171.04 -1.74 -13.72 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.05 1.23 7.19 -2.39 -0.02 1.21 16 37 H 0.41 10.21 8.59 -92.70 -0.80 9.42 16 38 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.72 7.93 -2.38 -0.02 2.70 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.07 3.64 6.04 -2.39 -0.01 3.62 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.39 9.81 9.08 -74.06 -0.67 9.14 16 46 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 1.66 7.07 -2.39 -0.02 1.65 16 Total: -1.00 -71.00 390.87 -0.63 -71.64 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.48 Total: 29.72 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 5.63 Total: 17.72 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.78 Total: -121.04 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.03 Total: -43.14 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.00 -0.63 -71.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090445890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.216 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds