Wall clock time and date at job start Tue Mar 31 2020 17:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38346 * 119.45987 * 2 1 4 4 C 1.38360 * 119.30267 * 179.75201 * 3 2 1 5 5 C 1.50700 * 120.85817 * 180.27051 * 4 3 2 6 6 C 1.40024 * 118.28627 * 0.51285 * 4 3 2 7 7 C 1.47842 * 120.56085 * 179.77611 * 6 4 3 8 8 O 1.21561 * 119.99892 * 269.98094 * 7 6 4 9 9 N 1.34766 * 120.00181 * 89.97633 * 7 6 4 10 10 C 1.46508 * 120.00211 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.45527 * 35.02617 * 10 9 7 12 12 C 1.53037 * 109.45926 * 275.06831 * 10 9 7 13 13 C 1.53188 * 109.31562 * 301.34488 * 12 10 9 14 14 N 1.46931 * 108.77556 * 305.36687 * 13 12 10 15 15 C 1.36933 * 120.62806 * 233.63359 * 14 13 12 16 16 H 1.08002 * 120.00411 * 27.65210 * 15 14 13 17 17 C 1.38810 * 119.99902 * 207.65876 * 15 14 13 18 18 N 1.31616 * 120.00349 * 17.36937 * 17 15 14 19 19 Si 1.86802 * 120.00267 * 197.37207 * 17 15 14 20 20 H 1.48501 * 109.47007 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47554 * 119.99353 * 19 17 15 22 22 H 1.48503 * 109.47303 * 239.99857 * 19 17 15 23 23 C 1.46915 * 118.74091 * 53.60534 * 14 13 12 24 24 C 1.53043 * 109.45921 * 155.00203 * 10 9 7 25 25 H 1.09002 * 109.49097 * 178.64247 * 24 10 9 26 26 O 1.42895 * 109.49413 * 298.70332 * 24 10 9 27 27 C 1.39526 * 118.88126 * 359.75358 * 6 4 3 28 28 C 1.50701 * 119.71749 * 179.97438 * 27 6 4 29 29 N 1.31693 * 120.56736 * 359.97438 * 27 6 4 30 30 H 1.09001 * 109.47097 * 269.72630 * 1 2 3 31 31 H 1.09001 * 109.47508 * 149.72135 * 1 2 3 32 32 H 1.09001 * 109.47118 * 29.72356 * 1 2 3 33 33 H 1.08000 * 120.35173 * 0.02798 * 3 2 1 34 34 H 1.09005 * 109.46940 * 270.25145 * 5 4 3 35 35 H 1.08994 * 109.47331 * 30.24807 * 5 4 3 36 36 H 1.09004 * 109.46821 * 150.25276 * 5 4 3 37 37 H 0.97000 * 120.00195 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.49773 * 61.29782 * 12 10 9 39 39 H 1.08998 * 109.50121 * 181.39174 * 12 10 9 40 40 H 1.09005 * 109.59214 * 185.57585 * 13 12 10 41 41 H 1.09006 * 109.58866 * 65.15312 * 13 12 10 42 42 H 0.96993 * 120.00669 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.59286 * 186.60977 * 23 14 13 44 44 H 1.09001 * 109.70237 * 66.24911 * 23 14 13 45 45 H 0.96710 * 113.99388 * 180.02562 * 26 24 10 46 46 H 1.08996 * 109.47529 * 269.98280 * 28 27 6 47 47 H 1.09009 * 109.46621 * 29.97795 * 28 27 6 48 48 H 1.09003 * 109.47050 * 149.97674 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0052 5 6 4.3475 2.4923 0.0115 6 6 4.2312 -0.0340 -0.0007 7 6 5.7083 -0.0967 -0.0005 8 8 6.3159 -0.1176 -1.0532 9 7 6.3812 -0.1306 1.1667 10 6 7.8449 -0.1922 1.1669 11 1 8.2327 0.3859 0.3282 12 6 8.2940 -1.6490 1.0326 13 6 7.7187 -2.4657 2.1940 14 7 8.1086 -1.8282 3.4591 15 6 8.7432 -2.5476 4.4362 16 1 9.3497 -3.4010 4.1709 17 6 8.6069 -2.1802 5.7678 18 7 7.6263 -1.3820 6.1333 19 14 9.8154 -2.8185 7.0413 20 1 10.8169 -3.6922 6.3790 21 1 10.5065 -1.6730 7.6859 22 1 9.0832 -3.5981 8.0715 23 6 7.8053 -0.4042 3.6555 24 6 8.3795 0.3894 2.4777 25 1 9.4674 0.3218 2.4887 26 8 7.9855 1.7585 2.5877 27 6 3.4715 -1.2043 -0.0063 28 6 4.1626 -2.5435 -0.0133 29 7 2.1558 -1.1487 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5095 33 1 1.6443 2.1381 0.0005 34 1 4.5347 2.8087 -1.0147 35 1 3.7720 3.2598 0.5290 36 1 5.2975 2.3426 0.5246 37 1 5.8964 -0.1143 2.0067 38 1 7.9326 -2.0555 0.0879 39 1 9.3826 -1.6980 1.0575 40 1 8.1150 -3.4805 2.1588 41 1 6.6316 -2.4930 2.1184 42 1 7.5312 -1.1250 7.0637 43 1 8.2587 -0.0587 4.5846 44 1 6.7256 -0.2613 3.7006 45 1 8.2911 2.1919 3.3964 46 1 4.3286 -2.8614 -1.0426 47 1 5.1205 -2.4607 0.5003 48 1 3.5386 -3.2770 0.4974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090445891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:03 Heat of formation + Delta-G solvation = -40.103441 kcal Electronic energy + Delta-G solvation = -30223.856311 eV Core-core repulsion = 26278.808134 eV Total energy + Delta-G solvation = -3945.048177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.87812 -39.45454 -37.76659 -35.33949 -34.28507 -34.10742 -33.77993 -31.93272 -29.82667 -29.25191 -28.82649 -27.87740 -27.23170 -25.35944 -22.95530 -22.28353 -21.78790 -21.25584 -20.49619 -18.77021 -17.77264 -17.08277 -16.96230 -16.59332 -15.66540 -15.12618 -15.05302 -14.82367 -14.53385 -14.37147 -14.02222 -13.74561 -13.45652 -13.39917 -13.34591 -13.28305 -13.01163 -12.82704 -12.68859 -12.34281 -12.32104 -12.04682 -11.89626 -11.81605 -11.74974 -11.67336 -11.13030 -11.06941 -10.88234 -10.46512 -10.24987 -10.04775 -10.03761 -9.68448 -9.51039 -9.41171 -9.32928 -8.81770 -8.73711 -8.58483 -6.82997 -5.93018 -3.36252 0.86277 1.14991 2.76674 3.28591 3.36312 3.38006 3.39683 3.61983 4.09859 4.36467 4.47724 4.51567 4.54199 4.87283 4.96809 5.20885 5.23233 5.29829 5.31035 5.35860 5.40476 5.42397 5.47132 5.49857 5.58605 5.64787 5.65411 5.74848 5.78724 5.88108 5.93503 5.98468 6.05857 6.09394 6.16360 6.21379 6.38567 6.39298 6.59030 6.66049 6.76149 6.88679 7.00862 7.36358 7.67618 7.78209 7.91363 8.03786 8.29875 8.42482 9.05354 9.68263 10.23616 11.15112 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.003527 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.529900 B = 7936.813702 C = 8342.094037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.186 4.186 4 C 0.001 3.999 5 C -0.123 4.123 6 C -0.184 4.184 7 C 0.572 3.428 8 O -0.541 6.541 9 N -0.695 5.695 10 C 0.164 3.836 11 H 0.080 0.920 12 C -0.146 4.146 13 C 0.145 3.855 14 N -0.587 5.587 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.146 3.854 24 C 0.067 3.933 25 H 0.063 0.937 26 O -0.573 6.573 27 C 0.177 3.823 28 C -0.112 4.112 29 N -0.489 5.489 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.024 0.976 45 H 0.376 0.624 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 6.358 -10.331 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.206 4.206 4 C -0.007 4.007 5 C -0.180 4.180 6 C -0.189 4.189 7 C 0.356 3.644 8 O -0.419 6.419 9 N -0.346 5.346 10 C 0.060 3.940 11 H 0.098 0.902 12 C -0.186 4.186 13 C 0.018 3.982 14 N -0.311 5.311 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.019 3.981 24 C 0.006 3.994 25 H 0.081 0.919 26 O -0.378 6.378 27 C 0.038 3.962 28 C -0.169 4.169 29 N -0.200 5.200 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.242 0.758 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.042 0.958 45 H 0.223 0.777 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.351 5.488 -11.475 15.787 hybrid contribution 1.052 0.663 1.756 2.152 sum -8.298 6.151 -9.719 14.183 Atomic orbital electron populations 1.20734 0.88650 1.03441 1.03271 1.21382 0.97044 0.88153 0.92785 1.21710 0.93655 0.99397 1.05795 1.20325 0.93758 0.94516 0.92113 1.20923 1.00497 0.93256 1.03318 1.20710 0.94773 0.94567 1.08820 1.17916 0.86099 0.76080 0.84293 1.90768 1.69247 1.50526 1.31366 1.46071 1.07588 1.72671 1.08291 1.20870 0.79087 0.96534 0.97554 0.90221 1.22420 1.01508 0.94692 0.99976 1.20949 0.96232 0.95286 0.85700 1.43958 1.68339 1.04746 1.14063 1.19247 1.21915 1.11660 0.85599 0.91317 1.25044 0.97278 1.00007 0.97164 1.70021 1.29296 1.38933 1.16375 0.86223 0.80838 0.78227 0.81492 1.20172 1.21529 1.21647 1.21389 0.97306 0.83764 0.95643 1.22934 0.98283 0.81374 0.96764 0.91932 1.86397 1.80608 1.24778 1.46000 1.21301 0.88824 0.94680 0.91378 1.20862 1.00335 0.92154 1.03586 1.67366 1.08873 1.29073 1.14707 0.90149 0.90367 0.90671 0.84449 0.90090 0.90522 0.90197 0.75769 0.91624 0.90976 0.92365 0.96183 0.93564 0.88900 0.95839 0.77692 0.89847 0.90091 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.01 0.37 -0.51 16 2 C 0.14 1.77 6.78 -82.51 -0.56 1.21 16 3 C -0.19 -2.15 9.43 -39.50 -0.37 -2.52 16 4 C 0.00 0.01 5.95 -103.91 -0.62 -0.61 16 5 C -0.12 -1.44 9.69 36.01 0.35 -1.09 16 6 C -0.18 -2.84 5.65 -104.82 -0.59 -3.43 16 7 C 0.57 9.67 4.31 -12.34 -0.05 9.62 16 8 O -0.54 -10.58 16.77 5.31 0.09 -10.49 16 9 N -0.70 -11.62 4.15 -54.71 -0.23 -11.85 16 10 C 0.16 2.84 2.47 -67.88 -0.17 2.67 16 11 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 12 C -0.15 -2.51 5.77 -26.62 -0.15 -2.67 16 13 C 0.14 2.84 6.26 -3.71 -0.02 2.82 16 14 N -0.59 -13.50 2.99 -172.32 -0.52 -14.01 16 15 C -0.25 -6.56 9.58 -15.06 -0.14 -6.70 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 18 N -0.90 -24.55 11.19 55.49 0.62 -23.93 16 19 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.15 3.12 4.64 -3.72 -0.02 3.10 16 24 C 0.07 1.20 3.36 -26.61 -0.09 1.11 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 O -0.57 -9.28 13.21 -35.23 -0.47 -9.74 16 27 C 0.18 2.69 6.82 -82.17 -0.56 2.13 16 28 C -0.11 -1.55 9.79 36.01 0.35 -1.20 16 29 N -0.49 -7.16 10.17 -5.42 -0.06 -7.21 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 1.08 7.19 -51.93 -0.37 0.71 16 37 H 0.41 7.02 6.86 -40.82 -0.28 6.74 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.02 0.40 7.04 -51.93 -0.37 0.04 16 42 H 0.25 6.73 8.31 -40.82 -0.34 6.40 16 43 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 44 H 0.02 0.53 6.65 -51.93 -0.35 0.19 16 45 H 0.38 4.87 9.09 45.56 0.41 5.29 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 1.19 6.37 -51.92 -0.33 0.86 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -30.85 385.25 -8.74 -39.59 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.59 Total: 12.26 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.37 Total: 3.94 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.18 Total: -57.00 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.38 Total: -20.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.85 -8.74 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090445891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.512 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds