Wall clock time and date at job start Tue Mar 31 2020 17:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38346 * 119.45987 * 2 1 4 4 C 1.38360 * 119.30267 * 179.75201 * 3 2 1 5 5 C 1.50700 * 120.85817 * 180.27051 * 4 3 2 6 6 C 1.40024 * 118.28627 * 0.51285 * 4 3 2 7 7 C 1.47842 * 120.56085 * 179.77611 * 6 4 3 8 8 O 1.21561 * 119.99892 * 269.98094 * 7 6 4 9 9 N 1.34766 * 120.00181 * 89.97633 * 7 6 4 10 10 C 1.46508 * 120.00211 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.45527 * 35.02617 * 10 9 7 12 12 C 1.53037 * 109.45926 * 275.06831 * 10 9 7 13 13 C 1.53188 * 109.31562 * 301.34488 * 12 10 9 14 14 N 1.46931 * 108.77556 * 305.36687 * 13 12 10 15 15 C 1.36933 * 120.62806 * 233.63359 * 14 13 12 16 16 H 1.08002 * 120.00411 * 27.65210 * 15 14 13 17 17 C 1.38810 * 119.99902 * 207.65876 * 15 14 13 18 18 N 1.31616 * 120.00349 * 17.36937 * 17 15 14 19 19 Si 1.86802 * 120.00267 * 197.37207 * 17 15 14 20 20 H 1.48501 * 109.47007 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47554 * 119.99353 * 19 17 15 22 22 H 1.48503 * 109.47303 * 239.99857 * 19 17 15 23 23 C 1.46915 * 118.74091 * 53.60534 * 14 13 12 24 24 C 1.53043 * 109.45921 * 155.00203 * 10 9 7 25 25 H 1.09002 * 109.49097 * 178.64247 * 24 10 9 26 26 O 1.42895 * 109.49413 * 298.70332 * 24 10 9 27 27 C 1.39526 * 118.88126 * 359.75358 * 6 4 3 28 28 C 1.50701 * 119.71749 * 179.97438 * 27 6 4 29 29 N 1.31693 * 120.56736 * 359.97438 * 27 6 4 30 30 H 1.09001 * 109.47097 * 269.72630 * 1 2 3 31 31 H 1.09001 * 109.47508 * 149.72135 * 1 2 3 32 32 H 1.09001 * 109.47118 * 29.72356 * 1 2 3 33 33 H 1.08000 * 120.35173 * 0.02798 * 3 2 1 34 34 H 1.09005 * 109.46940 * 270.25145 * 5 4 3 35 35 H 1.08994 * 109.47331 * 30.24807 * 5 4 3 36 36 H 1.09004 * 109.46821 * 150.25276 * 5 4 3 37 37 H 0.97000 * 120.00195 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.49773 * 61.29782 * 12 10 9 39 39 H 1.08998 * 109.50121 * 181.39174 * 12 10 9 40 40 H 1.09005 * 109.59214 * 185.57585 * 13 12 10 41 41 H 1.09006 * 109.58866 * 65.15312 * 13 12 10 42 42 H 0.96993 * 120.00669 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.59286 * 186.60977 * 23 14 13 44 44 H 1.09001 * 109.70237 * 66.24911 * 23 14 13 45 45 H 0.96710 * 113.99388 * 180.02562 * 26 24 10 46 46 H 1.08996 * 109.47529 * 269.98280 * 28 27 6 47 47 H 1.09009 * 109.46621 * 29.97795 * 28 27 6 48 48 H 1.09003 * 109.47050 * 149.97674 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0052 5 6 4.3475 2.4923 0.0115 6 6 4.2312 -0.0340 -0.0007 7 6 5.7083 -0.0967 -0.0005 8 8 6.3159 -0.1176 -1.0532 9 7 6.3812 -0.1306 1.1667 10 6 7.8449 -0.1922 1.1669 11 1 8.2327 0.3859 0.3282 12 6 8.2940 -1.6490 1.0326 13 6 7.7187 -2.4657 2.1940 14 7 8.1086 -1.8282 3.4591 15 6 8.7432 -2.5476 4.4362 16 1 9.3497 -3.4010 4.1709 17 6 8.6069 -2.1802 5.7678 18 7 7.6263 -1.3820 6.1333 19 14 9.8154 -2.8185 7.0413 20 1 10.8169 -3.6922 6.3790 21 1 10.5065 -1.6730 7.6859 22 1 9.0832 -3.5981 8.0715 23 6 7.8053 -0.4042 3.6555 24 6 8.3795 0.3894 2.4777 25 1 9.4674 0.3218 2.4887 26 8 7.9855 1.7585 2.5877 27 6 3.4715 -1.2043 -0.0063 28 6 4.1626 -2.5435 -0.0133 29 7 2.1558 -1.1487 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5095 33 1 1.6443 2.1381 0.0005 34 1 4.5347 2.8087 -1.0147 35 1 3.7720 3.2598 0.5290 36 1 5.2975 2.3426 0.5246 37 1 5.8964 -0.1143 2.0067 38 1 7.9326 -2.0555 0.0879 39 1 9.3826 -1.6980 1.0575 40 1 8.1150 -3.4805 2.1588 41 1 6.6316 -2.4930 2.1184 42 1 7.5312 -1.1250 7.0637 43 1 8.2587 -0.0587 4.5846 44 1 6.7256 -0.2613 3.7006 45 1 8.2911 2.1919 3.3964 46 1 4.3286 -2.8614 -1.0426 47 1 5.1205 -2.4607 0.5003 48 1 3.5386 -3.2770 0.4974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090445891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:02 Heat of formation + Delta-G solvation = -61.468435 kcal Electronic energy + Delta-G solvation = -30224.782767 eV Core-core repulsion = 26278.808134 eV Total energy + Delta-G solvation = -3945.974632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.01679 -40.76785 -39.22135 -36.86170 -35.68937 -35.29145 -34.79891 -33.62110 -31.43248 -30.57695 -30.04539 -28.87762 -28.24284 -27.13659 -24.33092 -23.71426 -23.35623 -22.33005 -21.66080 -20.30479 -19.11234 -18.66268 -18.13022 -18.07023 -17.06644 -16.80074 -16.15942 -15.99891 -15.86665 -15.72467 -15.52469 -15.36631 -14.89756 -14.55917 -14.39380 -14.30189 -14.11136 -13.98518 -13.82164 -13.71204 -13.55933 -13.26649 -13.19453 -13.00781 -12.88760 -12.74430 -12.69279 -12.67401 -12.64261 -12.14136 -11.99543 -11.82294 -11.37586 -11.20493 -10.93762 -10.59946 -10.53486 -10.47469 -10.10447 -9.82103 -8.71700 -7.90260 -5.35591 -0.16641 0.14311 1.44793 1.46239 1.50380 1.59254 2.09662 2.49662 2.57599 3.11107 3.15597 3.26633 3.48651 3.59806 3.64274 3.67167 3.92820 4.05373 4.12654 4.24998 4.31319 4.33884 4.35794 4.43885 4.48046 4.53928 4.56400 4.61052 4.64830 4.72968 4.81609 4.87364 4.93368 4.94465 5.03842 5.07530 5.11425 5.17242 5.17484 5.21273 5.30955 5.46782 5.58535 5.65718 5.65868 6.34431 6.41020 6.81733 6.89499 7.07462 7.12103 7.79854 8.31344 9.15557 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.003527 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.529900 B = 7936.813702 C = 8342.094037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.136 3.864 3 C -0.178 4.178 4 C -0.008 4.008 5 C -0.119 4.119 6 C -0.210 4.210 7 C 0.581 3.419 8 O -0.571 6.571 9 N -0.691 5.691 10 C 0.166 3.834 11 H 0.079 0.921 12 C -0.133 4.133 13 C 0.146 3.854 14 N -0.601 5.601 15 C -0.263 4.263 16 H 0.068 0.932 17 C -0.042 4.042 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.295 1.295 23 C 0.158 3.842 24 C 0.086 3.914 25 H 0.066 0.934 26 O -0.572 6.572 27 C 0.160 3.840 28 C -0.109 4.109 29 N -0.509 5.509 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.006 0.994 45 H 0.391 0.609 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 7.442 -10.948 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.001 4.001 3 C -0.197 4.197 4 C -0.016 4.016 5 C -0.176 4.176 6 C -0.215 4.215 7 C 0.367 3.633 8 O -0.451 6.451 9 N -0.341 5.341 10 C 0.062 3.938 11 H 0.097 0.903 12 C -0.173 4.173 13 C 0.021 3.979 14 N -0.326 5.326 15 C -0.393 4.393 16 H 0.086 0.914 17 C -0.238 4.238 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.223 1.223 23 C 0.032 3.968 24 C 0.025 3.975 25 H 0.083 0.917 26 O -0.379 6.379 27 C 0.022 3.978 28 C -0.166 4.166 29 N -0.221 5.221 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.024 0.976 45 H 0.241 0.759 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.293 6.576 -12.101 17.194 hybrid contribution 1.242 0.352 1.929 2.321 sum -9.051 6.929 -10.172 15.277 Atomic orbital electron populations 1.20857 0.85789 1.04826 1.04311 1.22126 0.98959 0.87835 0.91213 1.22112 0.92881 1.00759 1.03963 1.20649 0.94903 0.94309 0.91758 1.20935 0.99633 0.93237 1.03758 1.20695 0.93694 0.95864 1.11253 1.18094 0.86784 0.74861 0.83576 1.90737 1.70128 1.51999 1.32222 1.46020 1.07275 1.72526 1.08234 1.20815 0.79543 0.96426 0.97033 0.90329 1.22275 1.01747 0.94222 0.99051 1.20997 0.96135 0.95594 0.85219 1.44163 1.68424 1.05458 1.14544 1.19522 1.21720 1.11678 0.86410 0.91418 1.25686 0.98666 1.00718 0.98752 1.70151 1.30730 1.40316 1.16335 0.85286 0.78973 0.77547 0.79077 1.19323 1.21551 1.22268 1.21182 0.96088 0.83617 0.95944 1.22577 0.98035 0.81669 0.95262 0.91657 1.86382 1.80704 1.23689 1.47106 1.21426 0.89415 0.94872 0.92089 1.20820 0.99672 0.92265 1.03826 1.67420 1.08481 1.30550 1.15614 0.89056 0.90549 0.87788 0.80630 0.89494 0.87686 0.92455 0.76105 0.90830 0.90275 0.92353 0.96508 0.94012 0.91605 0.97570 0.75927 0.89270 0.91469 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.16 71.24 0.72 -0.67 16 2 C 0.14 3.06 6.78 42.57 0.29 3.35 16 3 C -0.18 -3.62 9.43 22.32 0.21 -3.41 16 4 C -0.01 -0.21 5.95 -19.40 -0.12 -0.32 16 5 C -0.12 -2.57 9.69 71.24 0.69 -1.88 16 6 C -0.21 -6.48 5.65 -19.99 -0.11 -6.59 16 7 C 0.58 19.79 4.31 86.79 0.37 20.17 16 8 O -0.57 -22.45 16.77 -3.91 -0.07 -22.52 16 9 N -0.69 -23.28 4.15 -445.28 -1.85 -25.13 16 10 C 0.17 5.72 2.47 45.02 0.11 5.83 16 11 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 12 C -0.13 -4.52 5.77 30.67 0.18 -4.35 16 13 C 0.15 5.76 6.26 86.36 0.54 6.30 16 14 N -0.60 -27.92 2.99 -699.10 -2.09 -30.01 16 15 C -0.26 -13.62 9.58 84.03 0.81 -12.81 16 16 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 17 C -0.04 -2.22 4.91 84.86 0.42 -1.80 16 18 N -0.93 -51.46 11.19 21.65 0.24 -51.21 16 19 Si 0.96 42.72 29.59 68.60 2.03 44.75 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 23 C 0.16 6.87 4.64 86.37 0.40 7.27 16 24 C 0.09 3.02 3.36 30.67 0.10 3.12 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 O -0.57 -18.07 13.21 -148.98 -1.97 -20.04 16 27 C 0.16 4.88 6.82 42.89 0.29 5.17 16 28 C -0.11 -3.07 9.79 71.24 0.70 -2.37 16 29 N -0.51 -14.51 10.17 -171.06 -1.74 -16.25 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.06 1.50 7.19 -2.38 -0.02 1.49 16 37 H 0.40 14.23 6.86 -92.71 -0.64 13.59 16 38 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 41 H 0.02 0.68 7.04 -2.38 -0.02 0.67 16 42 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.07 3.23 6.04 -2.39 -0.01 3.22 16 44 H 0.01 0.30 6.65 -2.39 -0.02 0.28 16 45 H 0.39 9.78 9.09 -74.05 -0.67 9.10 16 46 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 47 H 0.07 2.04 6.37 -2.38 -0.02 2.03 16 48 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -66.71 385.25 -0.15 -66.87 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.32 Total: 36.53 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.60 Total: 17.01 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.44 Total: -122.60 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.03 Total: -42.55 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.71 -0.15 -66.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090445891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.398 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds