Wall clock time and date at job start Tue Mar 31 2020 17:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38351 * 119.45902 * 2 1 4 4 C 1.38361 * 119.30067 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.85278 * 179.97438 * 4 3 2 6 6 C 1.40021 * 118.28653 * 0.02562 * 4 3 2 7 7 C 1.47845 * 120.55814 * 179.97438 * 6 4 3 8 8 O 1.21550 * 119.99605 * 89.99702 * 7 6 4 9 9 N 1.34774 * 120.00097 * 270.00100 * 7 6 4 10 10 C 1.46503 * 119.99739 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46138 * 35.00381 * 10 9 7 12 12 C 1.53039 * 109.45952 * 275.02637 * 10 9 7 13 13 C 1.53197 * 109.31234 * 178.62934 * 12 10 9 14 14 N 1.46928 * 108.77465 * 54.63640 * 13 12 10 15 15 C 1.36930 * 120.63333 * 126.36987 * 14 13 12 16 16 H 1.08001 * 119.99728 * 332.80282 * 15 14 13 17 17 C 1.38814 * 120.00088 * 152.79419 * 15 14 13 18 18 N 1.31621 * 119.99775 * 159.75299 * 17 15 14 19 19 Si 1.86795 * 120.00248 * 339.75744 * 17 15 14 20 20 H 1.48503 * 109.46938 * 94.88581 * 19 17 15 21 21 H 1.48496 * 109.47349 * 214.88673 * 19 17 15 22 22 H 1.48501 * 109.47221 * 334.89149 * 19 17 15 23 23 C 1.46935 * 118.73651 * 306.39280 * 14 13 12 24 24 C 1.53038 * 109.44587 * 154.96762 * 10 9 7 25 25 H 1.08994 * 109.50042 * 61.42430 * 24 10 9 26 26 O 1.42899 * 109.50073 * 301.32910 * 24 10 9 27 27 C 1.39523 * 118.88676 * 0.27051 * 6 4 3 28 28 C 1.50699 * 119.71841 * 179.72739 * 27 6 4 29 29 N 1.31699 * 120.55924 * 359.41131 * 27 6 4 30 30 H 1.09009 * 109.46978 * 90.00044 * 1 2 3 31 31 H 1.08996 * 109.47425 * 209.99726 * 1 2 3 32 32 H 1.08995 * 109.47134 * 330.00630 * 1 2 3 33 33 H 1.07999 * 120.34992 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47374 * 270.02089 * 5 4 3 35 35 H 1.08995 * 109.47572 * 30.02617 * 5 4 3 36 36 H 1.09000 * 109.46831 * 150.02661 * 5 4 3 37 37 H 0.97000 * 120.00295 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.50210 * 298.57719 * 12 10 9 39 39 H 1.08995 * 109.49712 * 58.65244 * 12 10 9 40 40 H 1.09000 * 109.59007 * 174.42254 * 13 12 10 41 41 H 1.09005 * 109.58376 * 294.85233 * 13 12 10 42 42 H 0.96999 * 120.00093 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.58114 * 173.39957 * 23 14 13 44 44 H 1.09002 * 109.58700 * 293.67679 * 23 14 13 45 45 H 0.96693 * 114.00530 * 180.02562 * 26 24 10 46 46 H 1.08996 * 109.47340 * 90.00067 * 28 27 6 47 47 H 1.09005 * 109.46535 * 210.00175 * 28 27 6 48 48 H 1.08998 * 109.47065 * 329.99777 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.3474 2.4924 0.0000 6 6 4.2312 -0.0340 0.0005 7 6 5.7083 -0.0967 0.0005 8 8 6.3154 -0.1224 1.0532 9 7 6.3816 -0.1252 -1.1667 10 6 7.8453 -0.1868 -1.1666 11 1 8.1833 -0.7909 -0.3247 12 6 8.4151 1.2280 -1.0404 13 6 9.9450 1.1568 -1.0062 14 7 10.4108 0.4221 -2.1902 15 6 11.3424 0.9712 -3.0303 16 1 11.4254 2.0445 -3.1168 17 6 12.1802 0.1483 -3.7705 18 7 12.7817 0.6161 -4.8437 19 14 12.4537 -1.6228 -3.2436 20 1 11.5154 -2.5085 -3.9788 21 1 13.8515 -2.0199 -3.5493 22 1 12.2114 -1.7481 -1.7839 23 6 9.8576 -0.9130 -2.4560 24 6 8.3288 -0.8185 -2.4740 25 1 8.0122 -0.2017 -3.3150 26 8 7.7716 -2.1278 -2.6057 27 6 3.4716 -1.2044 -0.0058 28 6 4.1627 -2.5435 -0.0122 29 7 2.1558 -1.1487 0.0000 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6443 2.1381 0.0004 34 1 4.5347 2.8033 -1.0278 35 1 3.7719 3.2625 0.5134 36 1 5.2974 2.3454 0.5139 37 1 5.8970 -0.1050 -2.0067 38 1 8.0978 1.8256 -1.8949 39 1 8.0512 1.6860 -0.1208 40 1 10.3581 2.1655 -1.0162 41 1 10.2665 0.6369 -0.1037 42 1 13.3669 0.0410 -5.3612 43 1 10.2132 -1.2699 -3.4227 44 1 10.1742 -1.6022 -1.6731 45 1 8.0366 -2.5886 -3.4135 46 1 4.3288 -2.8716 1.0139 47 1 3.5387 -3.2719 -0.5301 48 1 5.1205 -2.4556 -0.5251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090445893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:09 Heat of formation + Delta-G solvation = -61.318357 kcal Electronic energy + Delta-G solvation = -29626.921799 eV Core-core repulsion = 25680.953674 eV Total energy + Delta-G solvation = -3945.968124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00831 -40.75216 -39.45122 -37.04980 -35.90142 -35.28864 -34.83057 -34.02409 -31.90944 -30.76817 -30.09145 -28.91922 -28.33821 -26.79928 -24.76164 -23.81878 -23.10512 -22.22027 -21.49595 -21.29460 -19.24408 -18.50706 -18.31429 -18.11594 -17.81897 -16.85806 -16.17019 -16.13353 -15.84915 -15.75074 -15.57182 -15.21681 -14.98559 -14.68200 -14.58763 -14.31333 -14.23275 -14.12542 -14.02918 -13.93215 -13.75909 -13.61624 -13.19439 -13.08833 -13.01092 -12.73201 -12.71108 -12.67014 -12.51401 -12.36703 -12.04091 -11.74147 -11.50698 -11.27976 -11.11684 -10.73903 -10.55025 -10.47589 -10.17873 -9.83437 -9.03479 -8.19457 -5.53419 -0.18120 0.13695 1.24938 1.40564 1.41741 1.48713 1.99313 2.36987 2.55354 2.86815 3.11110 3.14074 3.30906 3.46845 3.59169 3.63926 3.75857 3.96638 4.03310 4.06644 4.22240 4.31416 4.32783 4.33354 4.47672 4.52470 4.54378 4.55499 4.63125 4.66713 4.68808 4.75211 4.81545 4.86278 4.89895 4.94844 4.99513 5.05199 5.13193 5.16810 5.20711 5.28335 5.34808 5.64880 5.81040 6.09921 6.38944 6.70023 6.86181 6.88863 7.06719 7.55003 7.94663 8.99765 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022901 B = 0.002962 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.358257 B = 9451.756353 C =10004.361422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.138 3.862 3 C -0.178 4.178 4 C -0.005 4.005 5 C -0.123 4.123 6 C -0.207 4.207 7 C 0.581 3.419 8 O -0.572 6.572 9 N -0.694 5.694 10 C 0.167 3.833 11 H 0.069 0.931 12 C -0.126 4.126 13 C 0.144 3.856 14 N -0.613 5.613 15 C -0.249 4.249 16 H 0.061 0.939 17 C -0.030 4.030 18 N -0.952 5.952 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.312 1.312 22 H -0.268 1.268 23 C 0.098 3.902 24 C 0.098 3.902 25 H 0.071 0.929 26 O -0.569 6.569 27 C 0.162 3.838 28 C -0.108 4.108 29 N -0.509 5.509 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.394 0.606 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.857 -0.109 7.355 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.001 3.999 3 C -0.197 4.197 4 C -0.013 4.013 5 C -0.179 4.179 6 C -0.213 4.213 7 C 0.366 3.634 8 O -0.451 6.451 9 N -0.343 5.343 10 C 0.062 3.938 11 H 0.088 0.912 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.339 5.339 15 C -0.378 4.378 16 H 0.079 0.921 17 C -0.225 4.225 18 N -0.597 5.597 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.241 1.241 22 H -0.192 1.192 23 C -0.028 4.028 24 C 0.037 3.963 25 H 0.088 0.912 26 O -0.376 6.376 27 C 0.024 3.976 28 C -0.165 4.165 29 N -0.221 5.221 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.192 0.808 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.244 0.756 46 H 0.099 0.901 47 H 0.112 0.888 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.059 -0.772 8.551 27.437 hybrid contribution 1.631 -0.306 -0.894 1.885 sum -24.428 -1.077 7.657 25.622 Atomic orbital electron populations 1.20863 0.85948 1.04707 1.04412 1.22096 0.98861 0.87845 0.91117 1.22112 0.92956 1.00708 1.03906 1.20622 0.94787 0.94251 0.91663 1.20974 0.99490 0.93163 1.04296 1.20615 0.93265 0.95825 1.11551 1.18172 0.86856 0.74724 0.83598 1.90784 1.70295 1.51423 1.32584 1.45893 1.06639 1.73220 1.08530 1.20761 0.79292 0.96627 0.97073 0.91239 1.22238 0.96340 0.95345 1.02705 1.21093 0.92462 0.96678 0.87867 1.44417 1.46419 1.16459 1.26616 1.18876 1.10104 0.92227 1.16611 0.92138 1.25850 0.97718 1.01676 0.97249 1.69940 1.34667 1.38364 1.16759 0.86035 0.75878 0.82029 0.79224 1.19435 1.24112 1.19248 1.22049 0.93365 0.87712 0.99681 1.22391 0.92521 0.84526 0.96912 0.91152 1.86421 1.73467 1.29191 1.48491 1.21419 0.89336 0.94835 0.92056 1.20792 0.99825 0.92322 1.03566 1.67429 1.08492 1.30502 1.15628 0.88788 0.90688 0.88026 0.80774 0.88557 0.87938 0.92717 0.75358 0.90738 0.90370 0.91147 0.95162 0.92813 0.91739 0.94944 0.75604 0.90135 0.88781 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.16 71.24 0.72 -0.27 16 2 C 0.14 2.43 6.78 42.57 0.29 2.72 16 3 C -0.18 -2.73 9.43 22.33 0.21 -2.52 16 4 C -0.01 -0.10 5.95 -19.40 -0.12 -0.22 16 5 C -0.12 -1.98 9.69 71.23 0.69 -1.29 16 6 C -0.21 -5.19 5.65 -19.99 -0.11 -5.30 16 7 C 0.58 16.83 4.32 86.79 0.37 17.20 16 8 O -0.57 -21.01 16.77 -3.87 -0.06 -21.07 16 9 N -0.69 -18.31 4.91 -445.29 -2.19 -20.50 16 10 C 0.17 5.22 2.12 45.02 0.10 5.31 16 11 H 0.07 2.52 7.58 -2.39 -0.02 2.51 16 12 C -0.13 -3.93 5.65 30.67 0.17 -3.76 16 13 C 0.14 5.44 6.52 86.36 0.56 6.00 16 14 N -0.61 -27.53 2.77 -699.05 -1.94 -29.47 16 15 C -0.25 -13.47 10.04 84.04 0.84 -12.62 16 16 H 0.06 3.56 8.05 -2.91 -0.02 3.53 16 17 C -0.03 -1.67 5.24 84.86 0.44 -1.22 16 18 N -0.95 -57.68 13.97 21.65 0.30 -57.38 16 19 Si 0.94 44.95 24.34 68.60 1.67 46.62 16 20 H -0.27 -11.73 6.70 99.48 0.67 -11.06 16 21 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 22 H -0.27 -12.63 6.45 99.48 0.64 -11.99 16 23 C 0.10 3.94 3.82 86.36 0.33 4.27 16 24 C 0.10 3.11 3.14 30.67 0.10 3.20 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 O -0.57 -15.78 13.16 -148.98 -1.96 -17.74 16 27 C 0.16 4.02 6.82 42.89 0.29 4.32 16 28 C -0.11 -2.48 9.79 71.24 0.70 -1.79 16 29 N -0.51 -11.82 10.17 -171.05 -1.74 -13.56 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.05 1.15 7.19 -2.39 -0.02 1.14 16 37 H 0.41 9.21 8.59 -92.71 -0.80 8.41 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 41 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.06 2.76 4.49 -2.39 -0.01 2.75 16 44 H 0.03 1.35 6.97 -2.39 -0.02 1.33 16 45 H 0.39 8.21 9.08 -74.06 -0.67 7.54 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 47 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.07 1.76 7.07 -2.39 -0.02 1.74 16 Total: -1.00 -72.83 384.26 -0.91 -73.74 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.58 Total: 25.35 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.60 Total: 14.02 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.56 Total: -120.91 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.03 Total: -38.82 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.67 Total: 46.62 kcal Total: -72.83 -0.91 -73.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090445893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.419 kcal (2) G-P(sol) polarization free energy of solvation -72.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds