Wall clock time and date at job start Tue Mar 31 2020 17:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 119.40806 * 2 1 4 4 C 1.38332 * 119.45838 * 179.79062 * 3 2 1 5 5 C 1.50693 * 120.82527 * 180.22623 * 4 3 2 6 6 C 1.39993 * 118.34885 * 0.48389 * 4 3 2 7 7 C 1.47522 * 120.59561 * 179.72605 * 6 4 3 8 8 O 1.21591 * 120.00077 * 270.01724 * 7 6 4 9 9 N 1.34778 * 119.99908 * 90.01948 * 7 6 4 10 10 C 1.46501 * 119.99641 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47052 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.88924 * 51.11393 * 11 10 9 13 13 C 1.54912 * 111.00183 * 287.19717 * 11 10 9 14 14 N 1.47427 * 104.83300 * 204.91674 * 13 11 10 15 15 C 1.36932 * 125.65032 * 204.14942 * 14 13 11 16 16 H 1.07998 * 120.00355 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00006 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47485 * 60.00092 * 19 17 15 21 21 H 1.48503 * 109.47360 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47242 * 300.00012 * 19 17 15 23 23 C 1.47025 * 108.70035 * 24.12444 * 14 13 11 24 24 C 1.54324 * 107.27279 * 358.94358 * 23 14 13 25 25 H 1.09005 * 110.87070 * 96.24333 * 24 23 14 26 26 C 1.53002 * 110.72013 * 219.44221 * 24 23 14 27 27 C 1.40279 * 118.80406 * 359.74247 * 6 4 3 28 28 O 1.35427 * 119.80121 * 180.02562 * 27 6 4 29 29 N 1.31882 * 119.40374 * 180.28120 * 2 1 3 30 30 H 1.09001 * 109.46953 * 269.72071 * 1 2 3 31 31 H 1.09000 * 109.47318 * 29.71668 * 1 2 3 32 32 H 1.09000 * 109.47161 * 149.72299 * 1 2 3 33 33 H 1.07998 * 120.26613 * 0.03254 * 3 2 1 34 34 H 1.09000 * 109.47579 * 270.25638 * 5 4 3 35 35 H 1.08999 * 109.47543 * 30.26134 * 5 4 3 36 36 H 1.08999 * 109.47146 * 150.26160 * 5 4 3 37 37 H 0.96994 * 119.99986 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.47364 * 299.99353 * 10 9 7 39 39 H 1.09002 * 109.47051 * 59.99848 * 10 9 7 40 40 H 1.08999 * 110.36837 * 323.75078 * 13 11 10 41 41 H 1.08990 * 110.36962 * 86.07710 * 13 11 10 42 42 H 0.97000 * 120.00467 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.88344 * 239.52408 * 23 14 13 44 44 H 1.09001 * 110.01070 * 118.43360 * 23 14 13 45 45 H 1.08998 * 109.46877 * 173.52359 * 26 24 23 46 46 H 1.09007 * 109.46719 * 293.52122 * 26 24 23 47 47 H 1.08997 * 109.47251 * 53.52151 * 26 24 23 48 48 H 0.96703 * 113.99972 * 270.02588 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0044 5 6 4.3408 2.5013 0.0096 6 6 4.2356 -0.0249 -0.0017 7 6 5.7097 -0.0814 -0.0034 8 8 6.3162 -0.0998 -1.0572 9 7 6.3843 -0.1127 1.1630 10 6 7.8482 -0.1694 1.1611 11 6 8.3593 -0.1963 2.6030 12 1 7.8565 -0.9729 3.1792 13 6 8.1956 1.1894 3.2760 14 7 9.2177 1.2163 4.3381 15 6 9.1738 1.9877 5.4686 16 1 8.3373 2.6492 5.6389 17 6 10.2046 1.9195 6.3958 18 7 11.2244 1.1137 6.1881 19 14 10.1451 2.9724 7.9377 20 1 8.9324 2.6311 8.7238 21 1 11.3558 2.7169 8.7587 22 1 10.1001 4.4069 7.5561 23 6 10.2916 0.2771 3.9827 24 6 9.8991 -0.3824 2.6438 25 1 10.3719 0.1294 1.8055 26 6 10.2649 -1.8681 2.6445 27 6 3.4758 -1.2041 -0.0064 28 8 4.0991 -2.4064 -0.0118 29 7 2.1546 -1.1489 -0.0056 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3634 0.8925 -0.5094 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6411 2.1375 0.0005 34 1 4.5260 2.8181 -1.0167 35 1 3.7625 3.2665 0.5273 36 1 5.2917 2.3558 0.5221 37 1 5.9005 -0.0977 2.0035 38 1 8.1763 -1.0705 0.6430 39 1 8.2452 0.7082 0.6508 40 1 8.3776 1.9856 2.5542 41 1 7.1989 1.2868 3.7061 42 1 11.9445 1.0658 6.8362 43 1 10.3893 -0.4844 4.7565 44 1 11.2338 0.8134 3.8696 45 1 9.8774 -2.3380 1.7406 46 1 11.3493 -1.9752 2.6734 47 1 9.8288 -2.3493 3.5198 48 1 4.2801 -2.7516 -0.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092866475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:15 Heat of formation + Delta-G solvation = -29.208967 kcal Electronic energy + Delta-G solvation = -28827.410040 eV Core-core repulsion = 24882.834283 eV Total energy + Delta-G solvation = -3944.575757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20093 -39.35302 -37.96766 -37.62680 -34.69080 -34.50140 -32.93224 -32.10043 -30.74100 -29.71676 -28.41946 -27.80817 -25.97286 -25.12160 -23.72938 -22.80471 -21.93590 -20.71011 -20.03194 -19.31040 -18.70944 -17.88680 -17.46006 -16.75994 -16.26975 -15.76073 -15.34546 -14.87343 -14.67879 -14.48945 -14.19761 -13.80880 -13.68347 -13.62052 -13.38325 -13.30874 -13.03276 -12.88796 -12.73149 -12.52898 -12.31636 -12.16888 -11.92908 -11.82380 -11.69300 -11.40330 -11.22056 -10.81982 -10.78885 -10.49775 -10.14530 -10.02545 -9.94130 -9.88129 -9.80896 -9.63912 -9.51463 -9.12155 -9.01845 -8.60758 -6.84052 -5.71845 -3.05526 0.46745 0.77787 2.44138 2.98436 3.09126 3.39408 3.43078 3.43644 3.45034 4.13734 4.19996 4.47793 4.52298 4.66280 4.86986 4.96084 5.05206 5.09677 5.19158 5.19991 5.25993 5.27786 5.32098 5.49668 5.52178 5.55773 5.60891 5.72742 5.74780 5.81025 5.86703 6.01800 6.08195 6.13074 6.18215 6.27175 6.38461 6.47572 6.55755 6.62712 6.74974 6.93305 7.12951 7.43630 7.54627 7.55515 7.63725 7.83196 8.09633 8.25409 9.21305 9.81642 10.47879 11.39650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002747 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.915622 B =10190.171728 C =11253.878599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.014 3.986 5 C -0.126 4.126 6 C -0.202 4.202 7 C 0.575 3.425 8 O -0.537 6.537 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.113 4.113 12 H 0.081 0.919 13 C 0.142 3.858 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.184 3.816 24 C -0.110 4.110 25 H 0.067 0.933 26 C -0.134 4.134 27 C 0.355 3.645 28 O -0.475 6.475 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.019 0.981 41 H 0.035 0.965 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 -2.448 -14.662 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.207 4.207 4 C 0.006 3.994 5 C -0.182 4.182 6 C -0.209 4.209 7 C 0.359 3.641 8 O -0.415 6.415 9 N -0.359 5.359 10 C 0.009 3.991 11 C -0.133 4.133 12 H 0.099 0.901 13 C 0.016 3.984 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.059 3.941 24 C -0.130 4.130 25 H 0.086 0.914 26 C -0.192 4.192 27 C 0.175 3.825 28 O -0.283 6.283 29 N -0.227 5.227 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.731 -3.183 -14.605 23.192 hybrid contribution 0.347 1.109 0.831 1.429 sum -17.384 -2.075 -13.774 22.276 Atomic orbital electron populations 1.20805 0.88115 1.03850 1.03642 1.21185 0.96997 0.87063 0.91803 1.21792 0.93633 0.99663 1.05576 1.20299 0.93692 0.94253 0.91164 1.20964 1.00421 0.93031 1.03818 1.20915 0.95096 0.94109 1.10772 1.17735 0.85865 0.76210 0.84288 1.90810 1.69396 1.50087 1.31160 1.46090 1.08237 1.73408 1.08213 1.21471 0.77886 1.02141 0.97640 1.22687 0.97328 0.99906 0.93395 0.90069 1.21578 0.93116 0.92826 0.90903 1.44446 1.20235 1.48077 1.20432 1.18994 1.04708 1.16610 0.95485 0.90584 1.24800 0.96911 0.99756 0.98942 1.69949 1.10479 1.40261 1.36192 0.86207 0.76877 0.79862 0.82845 1.21186 1.21591 1.21197 1.21220 0.91151 0.91958 0.89768 1.22439 0.93263 0.96234 1.01034 0.91411 1.21698 1.01181 0.95543 1.00782 1.18991 0.86350 0.84407 0.92705 1.84702 1.76645 1.32711 1.34212 1.67051 1.09105 1.30430 1.16130 0.89799 0.90186 0.90131 0.83736 0.89543 0.89950 0.90388 0.76191 0.91380 0.91180 0.96376 0.94702 0.93692 0.93303 0.94024 0.93646 0.92754 0.92692 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.26 16 2 C 0.17 1.56 6.78 -82.52 -0.56 1.00 16 3 C -0.19 -1.58 9.41 -39.50 -0.37 -1.95 16 4 C 0.01 0.14 5.95 -103.93 -0.62 -0.48 16 5 C -0.13 -1.11 9.69 36.00 0.35 -0.76 16 6 C -0.20 -2.48 5.66 -104.69 -0.59 -3.08 16 7 C 0.57 8.03 5.42 -12.48 -0.07 7.96 16 8 O -0.54 -9.09 17.11 5.29 0.09 -9.00 16 9 N -0.71 -9.44 5.50 -61.35 -0.34 -9.77 16 10 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 11 C -0.11 -1.87 2.50 -88.47 -0.22 -2.09 16 12 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 13 C 0.14 2.82 6.65 -2.53 -0.02 2.80 16 14 N -0.61 -15.23 3.39 -170.07 -0.58 -15.80 16 15 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.94 10.31 55.49 0.57 -26.37 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.18 4.38 4.97 -3.06 -0.02 4.36 16 24 C -0.11 -1.98 3.02 -88.79 -0.27 -2.25 16 25 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 26 C -0.13 -2.10 9.16 37.16 0.34 -1.76 16 27 C 0.36 4.39 7.77 -16.61 -0.13 4.26 16 28 O -0.47 -5.50 13.01 -17.97 -0.23 -5.73 16 29 N -0.51 -6.02 10.28 -9.20 -0.09 -6.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.08 0.81 7.19 -51.93 -0.37 0.43 16 37 H 0.40 4.99 8.46 -40.82 -0.35 4.65 16 38 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 40 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.05 1.29 7.00 -51.93 -0.36 0.93 16 44 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 45 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 48 H 0.41 3.02 9.06 45.56 0.41 3.43 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -34.33 395.01 -8.63 -42.96 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.90 Total: 4.09 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.08 Total: 2.83 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.44 Total: -58.06 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.14 Total: -14.74 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.33 -8.63 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092866475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.750 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds