Wall clock time and date at job start Tue Mar 31 2020 17:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37995 * 120.82238 * 2 1 4 4 C 1.39126 * 119.26171 * 179.97438 * 3 2 1 5 5 O 1.35506 * 119.52061 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.95281 * 359.97438 * 4 3 2 7 7 C 1.31637 * 121.79875 * 359.74623 * 6 4 3 8 8 C 1.50700 * 119.68971 * 180.28815 * 7 6 4 9 9 C 1.39560 * 120.62264 * 0.54577 * 7 6 4 10 10 C 1.47621 * 120.49438 * 179.72435 * 9 7 6 11 11 O 1.21584 * 119.99439 * 269.71741 * 10 9 7 12 12 N 1.34778 * 120.00574 * 89.72540 * 10 9 7 13 13 C 1.46490 * 120.00109 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47021 * 179.97438 * 13 12 10 15 15 H 1.08993 * 110.91543 * 51.09254 * 14 13 12 16 16 C 1.54913 * 111.00185 * 287.19367 * 14 13 12 17 17 N 1.47425 * 104.83172 * 204.91813 * 16 14 13 18 18 C 1.36934 * 125.64598 * 204.16741 * 17 16 14 19 19 H 1.08001 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.38818 * 120.00056 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99528 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00255 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47048 * 89.99818 * 22 20 18 24 24 H 1.48496 * 109.47094 * 209.99851 * 22 20 18 25 25 H 1.48503 * 109.47024 * 330.00057 * 22 20 18 26 26 C 1.47016 * 108.70144 * 24.12623 * 17 16 14 27 27 C 1.54322 * 107.27584 * 358.94568 * 26 17 16 28 28 H 1.08994 * 110.72057 * 96.34399 * 27 26 17 29 29 C 1.53006 * 110.71873 * 219.44305 * 27 26 17 30 30 H 1.09002 * 109.47497 * 270.02540 * 1 2 3 31 31 H 1.09004 * 109.47004 * 30.02282 * 1 2 3 32 32 H 1.09002 * 109.46930 * 150.02352 * 1 2 3 33 33 H 1.07990 * 120.36931 * 359.97438 * 3 2 1 34 34 H 0.96699 * 114.00232 * 89.99996 * 5 4 3 35 35 H 1.09004 * 109.47185 * 270.25716 * 8 7 6 36 36 H 1.09006 * 109.46965 * 30.24947 * 8 7 6 37 37 H 1.08997 * 109.47307 * 150.25290 * 8 7 6 38 38 H 0.96998 * 119.99319 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47511 * 59.99549 * 13 12 10 40 40 H 1.08997 * 109.47250 * 299.99462 * 13 12 10 41 41 H 1.08996 * 110.36871 * 86.07638 * 16 14 13 42 42 H 1.09002 * 110.46257 * 323.80093 * 16 14 13 43 43 H 0.97004 * 119.99644 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.88603 * 239.52323 * 26 17 16 45 45 H 1.09005 * 110.00815 * 118.43507 * 26 17 16 46 46 H 1.08994 * 109.47357 * 58.54604 * 29 27 26 47 47 H 1.08998 * 109.46865 * 178.54365 * 29 27 26 48 48 H 1.08994 * 109.46919 * 298.54190 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3043 2.3077 0.0011 6 7 4.2548 -0.0067 0.0016 7 6 3.6204 -1.1602 0.0071 8 6 4.4079 -2.4451 0.0146 9 6 2.2255 -1.2044 0.0006 10 6 1.5171 -2.4995 0.0007 11 8 1.2258 -3.0330 -1.0523 12 7 1.1931 -3.0904 1.1679 13 6 0.4895 -4.3753 1.1678 14 6 0.2447 -4.8228 2.6104 15 1 -0.2230 -4.0273 3.1904 16 6 1.5613 -5.2951 3.2762 17 7 1.1347 -6.2233 4.3392 18 6 1.8502 -6.5293 5.4659 19 1 2.8161 -6.0755 5.6321 20 6 1.3341 -7.4228 6.3946 21 7 0.1568 -7.9754 6.1922 22 14 2.3104 -7.8408 7.9312 23 1 1.9552 -6.8917 9.0168 24 1 1.9897 -9.2258 8.3599 25 1 3.7626 -7.7369 7.6385 26 6 -0.1865 -6.7652 3.9896 27 6 -0.6084 -6.1180 2.6537 28 1 -0.3659 -6.7710 1.8153 29 6 -2.1013 -5.7829 2.6621 30 1 -0.3634 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6937 2.1313 -0.0004 34 1 4.5071 2.6444 0.8846 35 1 4.6026 -2.7579 -1.0113 36 1 5.3542 -2.2882 0.5323 37 1 3.8365 -3.2184 0.5280 38 1 1.4257 -2.6648 2.0079 39 1 1.0958 -5.1216 0.6542 40 1 -0.4654 -4.2667 0.6537 41 1 2.0951 -4.4470 3.7049 42 1 2.1907 -5.8117 2.5517 43 1 -0.2037 -8.6000 6.8410 44 1 -0.9079 -6.5140 4.7673 45 1 -0.1272 -7.8475 3.8748 46 1 -2.3171 -5.1063 3.4889 47 1 -2.3715 -5.3043 1.7209 48 1 -2.6787 -6.6995 2.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093215428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:12 Heat of formation + Delta-G solvation = -29.325210 kcal Electronic energy + Delta-G solvation = -28854.838566 eV Core-core repulsion = 24910.257768 eV Total energy + Delta-G solvation = -3944.580798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22455 -39.54387 -38.10378 -37.38475 -34.73532 -34.63715 -33.01505 -32.10207 -30.76894 -29.46130 -28.40701 -27.94324 -26.02379 -25.23207 -23.93077 -22.69431 -21.65717 -20.93627 -20.07686 -19.37391 -18.75955 -17.85458 -17.53134 -16.78853 -16.30442 -15.93702 -15.35273 -14.79801 -14.55728 -14.45328 -14.17736 -13.90509 -13.78109 -13.65799 -13.43411 -13.34184 -12.98132 -12.92095 -12.58815 -12.56476 -12.43214 -12.19677 -11.95708 -11.85767 -11.73032 -11.44795 -11.25432 -10.85152 -10.80777 -10.44772 -10.15151 -10.03488 -9.96106 -9.90109 -9.84805 -9.67165 -9.56076 -9.13109 -9.07814 -8.63126 -6.86263 -5.74207 -3.07788 0.44035 0.79163 2.40593 2.87949 3.19863 3.32370 3.37463 3.42839 3.44725 4.11294 4.17218 4.45633 4.49317 4.67723 4.83250 4.96769 5.05463 5.14159 5.15947 5.18883 5.23251 5.27802 5.39477 5.49395 5.52073 5.53528 5.64338 5.70275 5.78240 5.81628 5.83105 5.97184 6.03711 6.10071 6.14158 6.23235 6.33351 6.44663 6.52614 6.57979 6.70980 6.89369 7.07825 7.37929 7.53852 7.53972 7.60846 7.80930 8.05258 8.23050 9.19188 9.79510 10.45339 11.37324 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002756 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.665854 B =10157.012569 C =11263.079019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.012 3.988 3 C -0.197 4.197 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.198 3.802 8 C -0.114 4.114 9 C -0.192 4.192 10 C 0.571 3.429 11 O -0.531 6.531 12 N -0.714 5.714 13 C 0.131 3.869 14 C -0.113 4.113 15 H 0.080 0.920 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.183 3.817 27 C -0.110 4.110 28 H 0.068 0.932 29 C -0.134 4.134 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.403 0.597 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.020 0.980 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 17.522 -11.253 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.004 3.996 3 C -0.219 4.219 4 C 0.153 3.847 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.059 3.941 8 C -0.171 4.171 9 C -0.197 4.197 10 C 0.355 3.645 11 O -0.407 6.407 12 N -0.365 5.365 13 C 0.008 3.992 14 C -0.132 4.132 15 H 0.099 0.901 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.059 3.941 27 C -0.130 4.130 28 H 0.086 0.914 29 C -0.192 4.192 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.146 16.985 -12.408 21.066 hybrid contribution -0.140 0.176 1.734 1.748 sum 1.006 17.161 -10.674 20.235 Atomic orbital electron populations 1.20960 0.89248 1.04289 1.03702 1.20204 0.96986 0.90833 0.91530 1.21864 0.93722 0.99349 1.06915 1.19255 0.87045 0.85060 0.93336 1.84725 1.76004 1.34029 1.34140 1.67002 1.41851 0.97830 1.15975 1.21077 0.89146 0.93205 0.90678 1.20896 1.00615 0.91450 1.04139 1.20730 0.94895 0.94437 1.09664 1.17846 0.78543 0.83824 0.84291 1.90828 1.54024 1.64659 1.31217 1.46152 1.58861 1.23322 1.08177 1.21483 0.96543 0.83585 0.97637 1.22685 0.98943 0.98252 0.93353 0.90127 1.21587 0.93085 0.92855 0.90954 1.44449 1.18488 1.49583 1.20675 1.19046 0.99848 1.21244 0.95614 0.90505 1.24800 0.97161 0.99496 0.98960 1.69962 1.17488 1.33289 1.36120 0.86131 0.79126 0.77500 0.83074 1.21632 1.21668 1.20697 1.21217 0.86874 0.96197 0.89851 1.22440 0.94106 0.95360 1.01103 0.91363 1.21691 0.95717 1.01239 1.00519 0.89528 0.90183 0.90291 0.83614 0.73817 0.89375 0.89455 0.89984 0.76214 0.91064 0.91383 0.94683 0.96285 0.93753 0.93327 0.94024 0.92802 0.93694 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.69 36.00 0.35 -0.63 16 2 C 0.01 0.12 5.95 -103.96 -0.62 -0.50 16 3 C -0.20 -1.75 9.73 -39.34 -0.38 -2.13 16 4 C 0.33 3.46 7.74 -16.96 -0.13 3.33 16 5 O -0.48 -4.10 13.55 -18.21 -0.25 -4.34 16 6 N -0.51 -6.21 10.28 -9.20 -0.09 -6.31 16 7 C 0.20 2.36 6.82 -82.18 -0.56 1.80 16 8 C -0.11 -1.20 9.78 36.01 0.35 -0.85 16 9 C -0.19 -2.24 5.65 -104.82 -0.59 -2.84 16 10 C 0.57 7.39 4.33 -12.43 -0.05 7.34 16 11 O -0.53 -8.71 17.11 5.29 0.09 -8.62 16 12 N -0.71 -8.38 5.49 -61.32 -0.34 -8.72 16 13 C 0.13 1.72 5.14 -4.04 -0.02 1.70 16 14 C -0.11 -1.73 2.50 -88.47 -0.22 -1.95 16 15 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 16 C 0.14 2.69 6.65 -2.53 -0.02 2.67 16 17 N -0.61 -14.84 3.39 -170.07 -0.58 -15.41 16 18 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.54 10.31 55.49 0.57 -25.97 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 4.25 4.97 -3.07 -0.02 4.23 16 27 C -0.11 -1.89 3.01 -88.78 -0.27 -2.16 16 28 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 29 C -0.13 -1.97 9.13 37.16 0.34 -1.63 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.08 0.74 7.18 -51.93 -0.37 0.37 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.40 1.34 9.06 45.56 0.41 1.76 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.88 7.06 -51.93 -0.37 0.51 16 38 H 0.40 4.18 8.46 -40.82 -0.35 3.83 16 39 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.05 1.25 7.06 -51.93 -0.37 0.88 16 45 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 46 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -33.99 393.54 -8.63 -42.62 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.86 Total: 2.42 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.09 Total: 1.69 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.44 Total: -56.41 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.16 Total: -12.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.99 -8.63 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093215428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.294 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds