Wall clock time and date at job start Tue Mar 31 2020 17:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37992 * 120.81894 * 2 1 4 4 C 1.39134 * 119.26243 * 180.02562 * 3 2 1 5 5 O 1.35504 * 119.52193 * 180.02562 * 4 3 2 6 6 N 1.32436 * 120.95101 * 0.02562 * 4 3 2 7 7 C 1.31638 * 121.79687 * 359.69957 * 6 4 3 8 8 C 1.39569 * 120.62549 * 0.59081 * 7 6 4 9 9 C 1.47619 * 120.49553 * 179.70276 * 8 7 6 10 10 O 1.21589 * 119.99406 * 173.90033 * 9 8 7 11 11 N 1.34776 * 120.00109 * 353.89059 * 9 8 7 12 12 C 1.46505 * 119.99578 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46512 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46779 * 180.02562 * 13 12 11 15 15 H 1.09002 * 110.89006 * 54.29490 * 14 13 12 16 16 C 1.54911 * 111.00159 * 290.41651 * 14 13 12 17 17 N 1.47473 * 104.80895 * 204.94722 * 16 14 13 18 18 C 1.36941 * 125.63011 * 204.04530 * 17 16 14 19 19 H 1.07997 * 119.99453 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00467 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99621 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47153 * 60.00330 * 22 20 18 24 24 H 1.48503 * 109.46788 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47220 * 300.00050 * 22 20 18 26 26 C 1.47023 * 108.72218 * 24.07573 * 17 16 14 27 27 C 1.54322 * 107.27053 * 358.96828 * 26 17 16 28 28 H 1.09004 * 110.71902 * 96.17605 * 27 26 17 29 29 C 1.53000 * 110.87174 * 219.37324 * 27 26 17 30 30 H 1.09004 * 109.47075 * 263.62463 * 1 2 3 31 31 H 1.09005 * 109.46936 * 23.62124 * 1 2 3 32 32 H 1.08997 * 109.46979 * 143.62602 * 1 2 3 33 33 H 1.07998 * 120.36911 * 0.04481 * 3 2 1 34 34 H 0.96700 * 114.00003 * 90.00239 * 5 4 3 35 35 H 1.08000 * 119.69008 * 180.30847 * 7 6 4 36 36 H 0.96998 * 120.00042 * 359.73277 * 11 9 8 37 37 H 1.08995 * 109.46937 * 300.00147 * 12 11 9 38 38 H 1.08999 * 109.46933 * 60.00772 * 12 11 9 39 39 H 1.09007 * 109.47244 * 299.99888 * 13 12 11 40 40 H 1.08993 * 109.47672 * 60.00332 * 13 12 11 41 41 H 1.08995 * 110.36941 * 323.75416 * 16 14 13 42 42 H 1.09000 * 110.36501 * 86.07888 * 16 14 13 43 43 H 0.96994 * 119.99962 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.88001 * 239.55273 * 26 17 16 45 45 H 1.09000 * 109.88137 * 118.38794 * 26 17 16 46 46 H 1.09004 * 109.47102 * 173.61083 * 29 27 26 47 47 H 1.08999 * 109.47482 * 293.61054 * 29 27 26 48 48 H 1.09002 * 109.47161 * 53.61382 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0066 -0.0016 7 6 3.6205 -1.1600 0.0038 8 6 2.2255 -1.2043 -0.0017 9 6 1.5172 -2.4995 -0.0023 10 8 0.3064 -2.5301 0.1049 11 7 2.2125 -3.6478 -0.1218 12 6 1.5093 -4.9331 -0.1230 13 6 2.5236 -6.0691 -0.2698 14 6 1.7892 -7.4113 -0.2717 15 1 1.0108 -7.4275 -1.0346 16 6 1.2021 -7.7249 1.1272 17 7 1.0932 -9.1950 1.1693 18 6 0.2361 -9.9090 1.9636 19 1 -0.4367 -9.3928 2.6324 20 6 0.2321 -11.2960 1.9090 21 7 1.0523 -11.9250 1.0942 22 14 -0.9376 -12.2698 2.9921 23 1 -2.3380 -11.8942 2.6713 24 1 -0.7466 -13.7219 2.7464 25 1 -0.6585 -11.9677 4.4190 26 6 2.0573 -9.7671 0.2181 27 6 2.7817 -8.5881 -0.4649 28 1 3.7296 -8.3785 0.0309 29 6 3.0023 -8.8717 -1.9521 30 1 -0.3633 -0.1141 1.0214 31 1 -0.3633 0.9416 -0.4118 32 1 -0.3633 -0.8274 -0.6094 33 1 1.6935 2.1313 0.0007 34 1 4.5077 2.6441 0.8835 35 1 4.1848 -2.0809 0.0078 36 1 3.1780 -3.6231 -0.2114 37 1 0.9657 -5.0506 0.8144 38 1 0.8072 -4.9624 -0.9563 39 1 3.0675 -5.9516 -1.2072 40 1 3.2253 -6.0397 0.5636 41 1 1.8749 -7.3722 1.9087 42 1 0.2188 -7.2677 1.2371 43 1 1.0497 -12.8942 1.0564 44 1 1.5322 -10.3625 -0.5289 45 1 2.7787 -10.3877 0.7497 46 1 3.4107 -7.9837 -2.4347 47 1 3.7015 -9.7002 -2.0643 48 1 2.0516 -9.1330 -2.4171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103424515.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:59 Heat of formation + Delta-G solvation = -25.393806 kcal Electronic energy + Delta-G solvation = -27931.985316 eV Core-core repulsion = 23987.574997 eV Total energy + Delta-G solvation = -3944.410319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28149 -39.61620 -38.20178 -37.44286 -35.57764 -34.12558 -33.28251 -31.80710 -30.71132 -30.39794 -28.37916 -26.82652 -25.67982 -24.79097 -23.99705 -22.72319 -21.94124 -21.13701 -19.80689 -19.23860 -18.89874 -18.06915 -17.50527 -16.80171 -16.35620 -15.76268 -15.73356 -15.24230 -15.06650 -14.57760 -14.22357 -14.09219 -13.77799 -13.52244 -13.38796 -13.17032 -13.05416 -12.93635 -12.69391 -12.56476 -12.31435 -12.11547 -11.92570 -11.69303 -11.40197 -11.21599 -11.06895 -10.77303 -10.73462 -10.34661 -10.06692 -10.04563 -9.89051 -9.86866 -9.73239 -9.63216 -9.51620 -9.47491 -9.14881 -8.56633 -6.78739 -5.67621 -3.00741 0.09672 0.68100 2.44720 2.89148 3.03621 3.35408 3.42723 3.46816 3.48023 4.01784 4.20131 4.29921 4.52584 4.54895 4.72358 4.86290 4.99068 5.08075 5.17927 5.25952 5.29031 5.40801 5.47218 5.49700 5.60140 5.62023 5.67408 5.73947 5.86581 5.90877 5.95697 6.05761 6.10943 6.21694 6.24632 6.30388 6.36038 6.52382 6.64614 6.66947 6.80643 6.92145 7.02098 7.24272 7.32477 7.60450 7.68032 7.87266 7.95295 8.30295 9.26258 9.86681 10.53126 11.43922 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.002024 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.500677 B =13828.743285 C =14584.737965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 C -0.198 4.198 4 C 0.335 3.665 5 O -0.481 6.481 6 N -0.511 5.511 7 C 0.166 3.834 8 C -0.203 4.203 9 C 0.562 3.438 10 O -0.527 6.527 11 N -0.722 5.722 12 C 0.118 3.882 13 C -0.117 4.117 14 C -0.095 4.095 15 H 0.077 0.923 16 C 0.139 3.861 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.184 3.816 27 C -0.114 4.114 28 H 0.064 0.936 29 C -0.133 4.133 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.165 0.835 36 H 0.398 0.602 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.017 0.983 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 25.709 -4.232 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.027 3.973 3 C -0.219 4.219 4 C 0.158 3.842 5 O -0.289 6.289 6 N -0.230 5.230 7 C 0.007 3.993 8 C -0.209 4.209 9 C 0.348 3.652 10 O -0.405 6.405 11 N -0.374 5.374 12 C -0.004 4.004 13 C -0.156 4.156 14 C -0.115 4.115 15 H 0.095 0.905 16 C 0.013 3.987 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.059 3.941 27 C -0.134 4.134 28 H 0.082 0.918 29 C -0.191 4.191 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.165 0.835 34 H 0.264 0.736 35 H 0.182 0.818 36 H 0.233 0.767 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.111 25.455 -4.710 26.599 hybrid contribution -0.725 -0.459 1.037 1.346 sum 5.386 24.996 -3.672 25.832 Atomic orbital electron populations 1.21149 0.88523 1.03900 1.04523 1.20404 0.97798 0.90575 0.88486 1.22022 0.93705 0.99664 1.06534 1.19381 0.87123 0.85227 0.92519 1.84716 1.75941 1.34045 1.34217 1.67172 1.42034 0.98260 1.15581 1.22738 0.90265 0.95299 0.91016 1.20934 0.95071 0.94682 1.10166 1.17864 0.87017 0.83306 0.77012 1.90770 1.13390 1.87009 1.49321 1.46016 1.10838 1.06272 1.74232 1.21555 0.95346 0.80434 1.03098 1.21760 0.97800 0.93801 1.02204 1.22327 0.97754 0.92041 0.99380 0.90510 1.21625 0.97341 0.86726 0.93006 1.44481 1.43050 0.99274 1.46523 1.19020 1.12633 0.88565 1.15297 0.90567 1.24799 0.99639 0.96378 0.99777 1.69956 1.39650 1.07438 1.40007 0.86207 0.80479 0.79126 0.80004 1.21194 1.21642 1.21224 1.21202 0.90887 0.90460 0.91566 1.22483 0.97912 0.97161 0.95821 0.91791 1.21676 1.01429 1.00177 0.95778 0.89588 0.91614 0.87867 0.83457 0.73614 0.81807 0.76706 0.90611 0.91147 0.91543 0.91228 0.96547 0.94463 0.93783 0.93474 0.94255 0.93825 0.93002 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.84 36.01 0.32 -0.73 16 2 C 0.04 0.32 5.95 -103.96 -0.62 -0.30 16 3 C -0.20 -1.51 9.70 -39.34 -0.38 -1.89 16 4 C 0.34 2.90 7.74 -16.96 -0.13 2.77 16 5 O -0.48 -3.37 13.55 -18.21 -0.25 -3.62 16 6 N -0.51 -5.01 10.37 -12.96 -0.13 -5.15 16 7 C 0.17 1.41 10.69 -17.14 -0.18 1.22 16 8 C -0.20 -1.94 5.89 -104.82 -0.62 -2.56 16 9 C 0.56 6.33 7.72 -12.43 -0.10 6.24 16 10 O -0.53 -7.53 13.49 5.29 0.07 -7.45 16 11 N -0.72 -6.97 5.51 -61.32 -0.34 -7.31 16 12 C 0.12 1.38 5.55 -4.04 -0.02 1.36 16 13 C -0.12 -1.37 4.84 -26.73 -0.13 -1.50 16 14 C -0.10 -1.53 2.48 -88.47 -0.22 -1.75 16 15 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 16 C 0.14 2.81 6.04 -2.50 -0.02 2.79 16 17 N -0.61 -15.52 3.40 -170.04 -0.58 -16.10 16 18 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.27 10.31 55.49 0.57 -26.69 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.18 4.40 4.97 -3.06 -0.02 4.39 16 27 C -0.11 -2.02 3.01 -88.79 -0.27 -2.29 16 28 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 29 C -0.13 -2.01 9.17 37.16 0.34 -1.67 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.40 8.06 -51.93 -0.42 -0.01 16 32 H 0.10 1.08 5.95 -51.93 -0.31 0.77 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.41 0.75 9.06 45.56 0.41 1.16 16 35 H 0.16 0.92 6.46 -52.49 -0.34 0.58 16 36 H 0.40 2.70 6.56 -40.82 -0.27 2.43 16 37 H 0.08 1.01 7.59 -51.93 -0.39 0.62 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 41 H 0.02 0.33 7.96 -51.93 -0.41 -0.08 16 42 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.05 1.26 7.02 -51.93 -0.36 0.89 16 45 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -34.90 387.21 -8.79 -43.68 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.66 Total: 0.34 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.29 Total: -0.84 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.48 Total: -55.25 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.18 Total: -11.07 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.90 -8.79 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103424515.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.288 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds