Wall clock time and date at job start Tue Mar 31 2020 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35926 * 116.99867 * 2 1 4 4 C 1.38855 * 120.40681 * 359.97438 * 3 2 1 5 5 N 1.31876 * 120.99996 * 179.97438 * 4 3 2 6 6 C 1.31679 * 121.93920 * 359.77607 * 5 4 3 7 7 C 1.39525 * 120.69369 * 0.49213 * 6 5 4 8 8 C 1.47849 * 120.52949 * 179.77712 * 7 6 5 9 9 O 1.21553 * 120.00029 * 222.54835 * 8 7 6 10 10 N 1.34783 * 120.00335 * 42.54890 * 8 7 6 11 11 C 1.48117 * 127.03217 * 175.20539 * 10 8 7 12 12 C 1.54937 * 103.25242 * 219.32486 * 11 10 8 13 13 H 1.08997 * 110.74158 * 80.96566 * 12 11 10 14 14 C 1.53002 * 110.89465 * 204.21375 * 12 11 10 15 15 N 1.46494 * 109.47586 * 288.51058 * 14 12 11 16 16 C 1.36932 * 120.00602 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00361 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00137 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 119.99911 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47319 * 89.99764 * 20 18 16 22 22 H 1.48502 * 109.47108 * 209.99991 * 20 18 16 23 23 H 1.48505 * 109.47188 * 329.99660 * 20 18 16 24 24 C 1.54619 * 102.84274 * 322.62390 * 12 11 10 25 25 H 1.09001 * 110.32562 * 262.96160 * 24 12 11 26 26 C 1.52994 * 110.41472 * 140.78521 * 24 12 11 27 27 C 1.47475 * 127.03172 * 355.24338 * 10 8 7 28 28 C 1.38838 * 120.40495 * 180.02562 * 3 2 1 29 29 C 1.50699 * 120.88201 * 359.95011 * 28 3 2 30 30 H 1.09003 * 109.47505 * 59.99742 * 1 2 3 31 31 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46755 * 299.99942 * 1 2 3 33 33 H 1.08004 * 119.49683 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.64933 * 180.26707 * 6 5 4 35 35 H 1.09000 * 110.65762 * 100.88460 * 11 10 8 36 36 H 1.09000 * 110.80980 * 337.83831 * 11 10 8 37 37 H 1.09004 * 109.47247 * 48.51083 * 14 12 11 38 38 H 1.09001 * 109.47421 * 168.50790 * 14 12 11 39 39 H 0.97004 * 119.99951 * 359.97438 * 15 14 12 40 40 H 0.96991 * 120.00140 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.47082 * 302.87697 * 26 24 12 42 42 H 1.08996 * 109.47260 * 62.87719 * 26 24 12 43 43 H 1.08998 * 109.47084 * 182.88091 * 26 24 12 44 44 H 1.09003 * 109.91432 * 35.16386 * 27 10 8 45 45 H 1.08999 * 109.91762 * 273.88327 * 27 10 8 46 46 H 1.08996 * 109.47587 * 264.24015 * 29 28 3 47 47 H 1.09009 * 109.46689 * 24.23686 * 29 28 3 48 48 H 1.09001 * 109.47687 * 144.23324 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3810 -0.0005 5 7 1.8846 3.5622 0.0000 6 6 3.1952 3.6891 0.0054 7 6 4.0198 2.5637 0.0005 8 6 5.4910 2.7105 0.0016 9 8 6.1730 2.0024 -0.7132 10 7 6.0760 3.6295 0.7953 11 6 7.5284 3.8421 0.9935 12 6 7.6399 4.1414 2.5096 13 1 7.6277 3.2173 3.0874 14 6 8.9013 4.9518 2.8144 15 7 10.0809 4.0977 2.6557 16 6 11.3316 4.6093 2.8770 17 1 11.4485 5.6428 3.1683 18 6 12.4492 3.7998 2.7271 19 7 13.6514 4.2915 2.9403 20 14 12.2471 2.0127 2.2227 21 1 12.2810 1.9095 0.7416 22 1 13.3528 1.2072 2.8005 23 1 10.9468 1.5006 2.7249 24 6 6.3704 4.9786 2.7889 25 1 6.6072 6.0425 2.7722 26 6 5.7620 4.5915 4.1382 27 6 5.4010 4.6284 1.6445 28 6 3.4320 1.2936 -0.0005 29 6 4.2810 0.0485 0.0000 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 0.2196 2.3226 -0.0005 34 1 3.6365 4.6749 0.0099 35 1 7.8761 4.6924 0.4069 36 1 8.0899 2.9439 0.7364 37 1 8.9674 5.7941 2.1257 38 1 8.8564 5.3226 3.8385 39 1 9.9760 3.1696 2.3937 40 1 14.4323 3.7260 2.8352 41 1 5.5417 3.5239 4.1446 42 1 6.4692 4.8213 4.9350 43 1 4.8414 5.1533 4.2962 44 1 4.4815 4.2084 2.0525 45 1 5.1773 5.5215 1.0611 46 1 4.5713 -0.1929 1.0225 47 1 3.7112 -0.7799 -0.4212 48 1 5.1744 0.2176 -0.6011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106319197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:53 Heat of formation + Delta-G solvation = -17.553440 kcal Electronic energy + Delta-G solvation = -29007.513264 eV Core-core repulsion = 25063.442928 eV Total energy + Delta-G solvation = -3944.070335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41626 -40.09351 -38.55744 -37.90235 -34.91581 -34.06634 -33.05526 -31.62671 -31.20133 -29.45144 -28.23062 -28.06915 -26.63307 -25.87927 -24.05597 -22.82762 -22.60584 -21.19648 -20.13007 -19.91888 -18.40858 -17.86022 -17.50489 -16.82870 -16.64651 -16.36010 -15.96076 -15.54178 -14.78683 -14.60586 -14.40596 -14.33760 -14.10816 -13.75609 -13.48501 -13.37195 -13.16956 -13.10947 -12.98337 -12.73777 -12.51952 -12.44606 -12.17309 -12.16018 -12.01872 -11.92864 -11.53317 -11.42650 -10.94630 -10.66969 -10.56837 -10.44893 -10.38907 -10.11677 -9.75225 -9.64305 -9.58445 -8.90887 -8.87540 -8.78554 -7.24394 -5.76770 -3.12787 0.32978 0.81738 2.37662 2.62683 2.90931 3.34365 3.39800 3.43380 3.47966 3.94012 4.08135 4.19432 4.36050 4.43624 4.46111 4.60045 4.61474 4.62934 4.74678 4.80365 4.88527 5.01192 5.11577 5.20461 5.30028 5.36118 5.38274 5.41612 5.46710 5.53209 5.62387 5.66240 5.68028 5.79827 5.84990 5.90029 5.97015 6.01649 6.07612 6.13523 6.15363 6.33491 6.59454 6.69236 6.69777 7.36176 7.43813 7.93962 7.98319 8.42006 9.20602 9.93172 10.12094 11.41482 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002788 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.135580 B =10039.672176 C =10941.246947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.069 3.931 4 C 0.036 3.964 5 N -0.454 5.454 6 C 0.097 3.903 7 C -0.142 4.142 8 C 0.583 3.417 9 O -0.525 6.525 10 N -0.612 5.612 11 C 0.113 3.887 12 C -0.107 4.107 13 H 0.084 0.916 14 C 0.169 3.831 15 N -0.756 5.756 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.099 4.099 25 H 0.092 0.908 26 C -0.142 4.142 27 C 0.098 3.902 28 C -0.018 4.018 29 C -0.129 4.129 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.733 -4.135 -3.736 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.121 4.121 5 N -0.163 5.163 6 C -0.061 4.061 7 C -0.147 4.147 8 C 0.370 3.630 9 O -0.402 6.402 10 N -0.345 5.345 11 C -0.009 4.009 12 C -0.127 4.127 13 H 0.102 0.898 14 C 0.042 3.958 15 N -0.402 5.402 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.118 4.118 25 H 0.111 0.889 26 C -0.200 4.200 27 C -0.025 4.025 28 C -0.027 4.027 29 C -0.185 4.185 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -30.668 -3.892 -4.130 31.188 hybrid contribution 0.139 -1.821 -0.302 1.851 sum -30.528 -5.712 -4.432 31.373 Atomic orbital electron populations 1.23162 0.77829 1.04602 1.01613 1.86105 1.21634 1.25477 1.88543 1.19719 0.92222 0.86107 0.99795 1.23065 1.00701 0.87077 1.01258 1.67555 1.11748 1.25925 1.11085 1.22959 0.88518 0.98272 0.96380 1.20658 0.94683 0.93944 1.05412 1.17517 0.86286 0.79461 0.79719 1.90777 1.64390 1.44584 1.40430 1.48748 1.08993 1.33319 1.43401 1.22655 0.79228 1.02847 0.96120 1.22649 0.95085 0.99872 0.95054 0.89812 1.20607 0.83969 0.92645 0.98589 1.42728 1.02617 1.09985 1.84891 1.19029 0.81657 0.97355 1.39434 0.89176 1.24667 0.95117 0.97680 1.01582 1.69697 0.97104 1.35646 1.55689 0.86579 0.76961 0.86487 0.78688 1.20913 1.21716 1.20355 1.22084 0.94342 1.01180 0.94224 0.88940 1.21839 1.00603 1.01236 0.96278 1.22450 0.96570 0.91482 0.91962 1.19720 0.90894 0.95583 0.96536 1.20982 1.00475 0.93301 1.03738 0.92304 0.87692 0.92285 0.82080 0.81820 0.89971 0.89540 0.95096 0.94976 0.80637 0.93042 0.92775 0.91638 0.92570 0.90585 0.90918 0.90547 0.90486 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.63 9.58 -19.51 -0.19 -2.82 16 3 C 0.07 0.69 6.68 -39.13 -0.26 0.43 16 4 C 0.04 0.33 10.21 -17.30 -0.18 0.15 16 5 N -0.45 -4.76 10.34 -12.79 -0.13 -4.89 16 6 C 0.10 1.02 9.21 -17.14 -0.16 0.86 16 7 C -0.14 -1.71 5.40 -104.84 -0.57 -2.28 16 8 C 0.58 8.30 7.16 -12.32 -0.09 8.21 16 9 O -0.52 -9.20 14.86 5.32 0.08 -9.12 16 10 N -0.61 -7.88 3.29 -170.87 -0.56 -8.44 16 11 C 0.11 1.66 6.44 -2.13 -0.01 1.64 16 12 C -0.11 -1.51 2.62 -88.75 -0.23 -1.74 16 13 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 14 C 0.17 3.03 5.58 -4.04 -0.02 3.00 16 15 N -0.76 -17.53 5.33 -59.91 -0.32 -17.85 16 16 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 20 Si 0.88 22.40 27.73 -169.99 -4.71 17.68 16 21 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 24 C -0.10 -1.03 3.17 -89.24 -0.28 -1.31 16 25 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 26 C -0.14 -1.35 8.90 37.15 0.33 -1.02 16 27 C 0.10 0.96 5.01 -2.98 -0.01 0.94 16 28 C -0.02 -0.21 5.96 -103.76 -0.62 -0.83 16 29 C -0.13 -1.48 9.42 36.00 0.34 -1.14 16 30 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.18 7.68 -51.93 -0.40 -0.21 16 33 H 0.16 0.94 6.30 -52.48 -0.33 0.61 16 34 H 0.16 1.42 6.23 -52.49 -0.33 1.09 16 35 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 36 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16 37 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.68 6.36 -51.93 -0.33 0.35 16 45 H 0.07 0.58 7.50 -51.93 -0.39 0.19 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.79 7.46 -51.92 -0.39 0.40 16 48 H 0.10 1.37 5.68 -51.93 -0.29 1.07 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -34.60 382.56 -7.59 -42.19 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.26 Total: 5.04 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.03 Total: 1.04 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.24 Total: -59.79 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.11 Total: -11.93 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.60 -7.59 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106319197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.632 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds