Wall clock time and date at job start Tue Mar 31 2020 17:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38667 * 120.79022 * 2 1 4 4 C 1.38187 * 119.16596 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76380 * 0.02562 * 4 3 2 6 6 C 1.31859 * 121.72671 * 359.97438 * 5 4 3 7 7 C 1.38226 * 120.76090 * 359.73806 * 6 5 4 8 8 C 1.50698 * 120.41818 * 180.27120 * 7 6 5 9 9 C 1.50711 * 109.46885 * 265.26812 * 8 7 6 10 10 O 1.21274 * 119.99526 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99517 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46832 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.51336 * 60.10115 * 13 12 11 15 15 C 1.53297 * 109.51395 * 180.25147 * 13 12 11 16 16 N 1.47151 * 108.38772 * 172.22350 * 15 13 12 17 17 C 1.36939 * 120.97973 * 129.44338 * 16 15 13 18 18 H 1.07996 * 120.00241 * 333.77380 * 17 16 15 19 19 C 1.38807 * 119.99887 * 153.77464 * 17 16 15 20 20 N 1.31622 * 120.00191 * 159.98558 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 339.99240 * 19 17 16 22 22 H 1.48502 * 109.47141 * 91.87911 * 21 19 17 23 23 H 1.48493 * 109.47129 * 211.88073 * 21 19 17 24 24 H 1.48502 * 109.46766 * 331.87715 * 21 19 17 25 25 C 1.47150 * 118.03653 * 309.47187 * 16 15 13 26 26 C 1.53288 * 108.38854 * 50.52833 * 25 16 15 27 27 O 1.42961 * 109.51251 * 299.99821 * 13 12 11 28 28 H 1.08998 * 109.46636 * 90.00135 * 1 2 3 29 29 H 1.09000 * 109.47054 * 329.99895 * 1 2 3 30 30 H 1.08996 * 109.46926 * 210.00036 * 1 2 3 31 31 H 1.07999 * 120.42038 * 359.95260 * 3 2 1 32 32 H 1.07995 * 119.61938 * 179.97438 * 4 3 2 33 33 H 1.07994 * 119.61850 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47250 * 25.26604 * 8 7 6 35 35 H 1.08998 * 109.47133 * 145.27165 * 8 7 6 36 36 H 0.96994 * 120.00028 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.47086 * 299.99481 * 12 11 9 38 38 H 1.08998 * 109.47037 * 59.99883 * 12 11 9 39 39 H 1.08997 * 109.47246 * 59.99798 * 14 13 12 40 40 H 1.09005 * 109.47217 * 179.97438 * 14 13 12 41 41 H 1.09005 * 109.47349 * 299.99943 * 14 13 12 42 42 H 1.08999 * 109.68577 * 291.95376 * 15 13 12 43 43 H 1.09005 * 109.67877 * 52.50497 * 15 13 12 44 44 H 0.97001 * 120.00363 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.67641 * 290.80442 * 25 16 15 46 46 H 1.08996 * 109.71003 * 170.27596 * 25 16 15 47 47 H 1.09001 * 109.51653 * 187.77474 * 26 25 16 48 48 H 1.09007 * 109.55319 * 67.64749 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5984 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0060 8 6 1.4909 -2.5116 0.0121 9 6 1.1408 -2.8989 -1.4017 10 8 1.4498 -2.1736 -2.3232 11 7 0.4835 -4.0508 -1.6417 12 6 0.1437 -4.4275 -3.0160 13 6 -0.5933 -5.7683 -3.0098 14 6 -1.8765 -5.6423 -2.1862 15 6 -0.9438 -6.1665 -4.4481 16 7 -1.4799 -7.5369 -4.4327 17 6 -2.6634 -7.8378 -5.0523 18 1 -3.4132 -7.0720 -5.1854 19 6 -2.8993 -9.1270 -5.5094 20 7 -4.1317 -9.5293 -5.7373 21 14 -1.4679 -10.2913 -5.8008 22 1 -1.2153 -11.0831 -4.5702 23 1 -1.7964 -11.2090 -6.9211 24 1 -0.2540 -9.5073 -6.1430 25 6 -0.7069 -8.5741 -3.7313 26 6 -0.3679 -8.0586 -2.3281 27 8 0.2466 -6.7721 -2.4349 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.6967 2.1377 -0.0008 32 1 4.1583 2.0754 0.0001 33 1 4.1586 -2.0749 0.0001 34 1 2.1320 -3.2765 0.4501 35 1 0.5780 -2.4218 0.6008 36 1 0.2360 -4.6306 -0.9046 37 1 -0.4969 -3.6625 -3.4546 38 1 1.0568 -4.5179 -3.6043 39 1 -2.5171 -4.8781 -2.6262 40 1 -2.4012 -6.5978 -2.1826 41 1 -1.6256 -5.3613 -1.1633 42 1 -1.6942 -5.4832 -4.8458 43 1 -0.0479 -6.1298 -5.0679 44 1 -4.2965 -10.4302 -6.0570 45 1 0.2129 -8.7797 -4.2790 46 1 -1.2998 -9.4854 -3.6544 47 1 0.3193 -8.7511 -1.8419 48 1 -1.2812 -7.9780 -1.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108004612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:40 Heat of formation + Delta-G solvation = -18.288464 kcal Electronic energy + Delta-G solvation = -28993.224419 eV Core-core repulsion = 25049.122210 eV Total energy + Delta-G solvation = -3944.102208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80810 -39.82337 -38.92400 -35.32066 -34.64401 -34.46319 -32.81725 -32.13861 -31.45273 -28.98172 -28.45096 -27.83181 -26.55969 -25.67244 -23.24194 -23.10797 -22.22179 -21.45062 -20.40870 -19.09775 -17.45015 -17.05538 -16.94238 -16.72278 -16.38089 -15.84346 -15.57740 -15.15489 -14.99363 -14.71867 -14.40511 -14.07496 -14.04207 -13.88625 -13.55067 -13.35512 -13.29235 -13.08276 -12.91199 -12.82906 -12.48057 -12.39596 -12.03498 -11.86939 -11.66129 -11.63801 -11.50259 -11.06907 -10.87650 -10.43023 -10.34406 -10.07439 -9.75034 -9.66542 -9.62204 -9.58725 -9.46267 -9.17218 -9.05565 -8.63490 -7.08589 -6.04574 -3.42086 0.87366 1.05011 2.56450 3.10268 3.22999 3.42333 3.44960 3.63362 3.97094 4.16471 4.36253 4.43214 4.44309 4.59014 4.62178 4.68770 4.79671 5.04864 5.07608 5.09702 5.16801 5.17191 5.24181 5.29932 5.32681 5.35399 5.53782 5.66512 5.68636 5.72263 5.76682 5.81944 5.83222 5.92343 6.01977 6.09590 6.16203 6.17666 6.38577 6.42405 6.44764 6.48768 6.51513 6.68023 7.45855 7.55741 7.77253 7.78451 8.16523 8.20714 8.78564 9.59535 9.95204 11.10887 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002307 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.513318 B =12136.604375 C =12445.505962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.175 4.175 4 C 0.097 3.903 5 N -0.490 5.490 6 C 0.115 3.885 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.512 3.488 10 O -0.537 6.537 11 N -0.718 5.718 12 C 0.139 3.861 13 C 0.087 3.913 14 C -0.167 4.167 15 C 0.131 3.869 16 N -0.604 5.604 17 C -0.261 4.261 18 H 0.088 0.912 19 C 0.024 3.976 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.089 3.911 26 C 0.046 3.954 27 O -0.380 6.380 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.404 0.596 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 16.197 15.913 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.195 4.195 4 C -0.059 4.059 5 N -0.198 5.198 6 C -0.042 4.042 7 C -0.120 4.120 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.413 6.413 11 N -0.370 5.370 12 C 0.015 3.985 13 C 0.046 3.954 14 C -0.224 4.224 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.175 4.175 20 N -0.549 5.549 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.037 4.037 26 C -0.032 4.032 27 O -0.299 6.299 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.239 0.761 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.962 16.628 15.200 25.054 hybrid contribution -0.581 -1.267 -0.077 1.396 sum 10.381 15.361 15.123 23.926 Atomic orbital electron populations 1.20894 0.90381 1.03092 1.03372 1.20138 0.96682 0.92468 0.94033 1.21985 0.95630 0.98480 1.03374 1.22715 0.91784 0.96235 0.95152 1.67679 1.41101 0.98451 1.12599 1.22601 0.90857 0.96343 0.94390 1.20149 0.94948 0.94212 1.02652 1.20619 1.02369 0.95614 0.95589 1.20400 0.77858 0.81126 0.90844 1.90732 1.53123 1.51600 1.45888 1.45929 1.58629 1.22452 1.09967 1.21340 1.00128 0.94041 0.83010 1.22229 0.90122 0.87004 0.96090 1.22255 0.97548 1.04049 0.98553 1.21462 0.98001 0.88068 0.92067 1.44303 1.23955 1.03317 1.61239 1.18884 0.90500 0.96993 1.32482 0.89396 1.25246 0.96104 0.97424 0.98748 1.69817 1.18396 1.18393 1.48288 0.86975 0.83941 0.80720 0.76924 1.21623 1.23038 1.19563 1.22024 0.95937 0.93810 0.91902 1.23091 0.97825 0.84169 0.98117 1.87839 1.40571 1.18845 1.82668 0.90020 0.91000 0.90990 0.84888 0.82904 0.82987 0.87577 0.87607 0.76098 0.90089 0.90837 0.91788 0.90209 0.93351 0.90832 0.94865 0.92641 0.94825 0.90087 0.89684 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.68 36.01 0.35 -0.54 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.54 9.82 -39.44 -0.39 -1.92 16 4 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 5 N -0.49 -5.74 10.36 -13.25 -0.14 -5.88 16 6 C 0.12 1.25 10.84 -17.54 -0.19 1.06 16 7 C -0.12 -1.17 4.39 -104.48 -0.46 -1.63 16 8 C -0.10 -0.82 5.39 -29.03 -0.16 -0.97 16 9 C 0.51 5.97 7.82 -10.98 -0.09 5.89 16 10 O -0.54 -8.50 16.03 5.56 0.09 -8.41 16 11 N -0.72 -8.02 5.15 -60.30 -0.31 -8.33 16 12 C 0.14 1.87 4.82 -4.04 -0.02 1.85 16 13 C 0.09 1.32 0.76 -90.47 -0.07 1.25 16 14 C -0.17 -2.37 7.92 37.16 0.29 -2.07 16 15 C 0.13 2.46 5.40 -3.53 -0.02 2.44 16 16 N -0.60 -13.61 2.36 -171.83 -0.40 -14.01 16 17 C -0.26 -6.94 10.10 -15.06 -0.15 -7.09 16 18 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 20 N -0.91 -26.92 13.97 55.49 0.78 -26.15 16 21 Si 0.88 21.81 24.29 -169.99 -4.13 17.68 16 22 H -0.29 -6.78 6.58 56.52 0.37 -6.41 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 24 H -0.27 -6.66 6.55 56.52 0.37 -6.29 16 25 C 0.09 1.85 4.38 -3.54 -0.02 1.83 16 26 C 0.05 0.76 6.60 37.31 0.25 1.01 16 27 O -0.38 -6.13 9.97 -35.23 -0.35 -6.48 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 6.16 -51.93 -0.32 0.13 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.11 0.63 8.06 -51.93 -0.42 0.22 16 35 H 0.11 0.61 6.28 -51.93 -0.33 0.29 16 36 H 0.40 3.80 7.20 -40.82 -0.29 3.51 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.36 6.12 -51.93 -0.32 1.04 16 41 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 42 H 0.07 1.35 7.95 -51.93 -0.41 0.93 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 45 H 0.03 0.72 6.87 -51.93 -0.36 0.37 16 46 H 0.08 1.82 4.61 -51.93 -0.24 1.58 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.06 0.91 6.26 -51.92 -0.32 0.59 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -33.70 376.52 -7.58 -41.27 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.21 Total: 3.07 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.57 Total: 1.55 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.08 Total: -54.36 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.26 Total: -14.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.13 Total: 17.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -7.58 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.984 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds