Wall clock time and date at job start Tue Mar 31 2020 17:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38673 * 120.78658 * 2 1 4 4 C 1.38186 * 119.16376 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76056 * 359.97224 * 4 3 2 6 6 C 1.31851 * 121.72643 * 0.02562 * 5 4 3 7 7 C 1.38220 * 120.76819 * 359.74635 * 6 5 4 8 8 C 1.50695 * 120.42266 * 180.26252 * 7 6 5 9 9 C 1.50702 * 109.47459 * 265.22227 * 8 7 6 10 10 O 1.21286 * 119.99232 * 0.02562 * 9 8 7 11 11 N 1.34764 * 120.00400 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46986 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.51264 * 305.09603 * 13 12 11 15 15 C 1.53300 * 109.50865 * 184.99852 * 13 12 11 16 16 N 1.47161 * 108.38263 * 187.77095 * 15 13 12 17 17 C 1.36929 * 120.98286 * 230.51327 * 16 15 13 18 18 H 1.08002 * 119.99803 * 153.32983 * 17 16 15 19 19 C 1.38813 * 120.00221 * 333.32723 * 17 16 15 20 20 N 1.31624 * 119.99964 * 343.55188 * 19 17 16 21 21 Si 1.86806 * 120.00170 * 163.54711 * 19 17 16 22 22 H 1.48497 * 109.46712 * 90.00176 * 21 19 17 23 23 H 1.48496 * 109.46808 * 210.00256 * 21 19 17 24 24 H 1.48497 * 109.46952 * 330.00187 * 21 19 17 25 25 C 1.47151 * 118.03196 * 50.53778 * 16 15 13 26 26 C 1.53295 * 108.38507 * 309.46304 * 25 16 15 27 27 O 1.42954 * 109.22356 * 52.30361 * 26 25 16 28 28 H 1.09004 * 109.47236 * 90.00396 * 1 2 3 29 29 H 1.08997 * 109.47053 * 210.00462 * 1 2 3 30 30 H 1.09006 * 109.47573 * 330.00489 * 1 2 3 31 31 H 1.08005 * 120.41756 * 359.94806 * 3 2 1 32 32 H 1.07992 * 119.61750 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.61634 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47417 * 25.22338 * 8 7 6 35 35 H 1.09005 * 109.47356 * 145.22620 * 8 7 6 36 36 H 0.97002 * 120.00234 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.46982 * 299.99745 * 12 11 9 38 38 H 1.08998 * 109.47273 * 59.99970 * 12 11 9 39 39 H 1.09002 * 109.46822 * 60.00536 * 14 13 12 40 40 H 1.09003 * 109.47249 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.47436 * 300.00379 * 14 13 12 42 42 H 1.08993 * 109.68306 * 307.49487 * 15 13 12 43 43 H 1.09000 * 109.67995 * 68.01671 * 15 13 12 44 44 H 0.96995 * 119.99914 * 180.02562 * 20 19 17 45 45 H 1.08991 * 109.68538 * 69.18674 * 25 16 15 46 46 H 1.09007 * 109.68103 * 189.74229 * 25 16 15 47 47 H 1.09001 * 109.51310 * 172.23159 * 26 25 16 48 48 H 1.09004 * 109.51038 * 292.32409 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 0.0005 5 7 4.2403 0.0002 0.0016 6 6 3.5983 -1.1515 0.0017 7 6 2.2167 -1.1909 0.0059 8 6 1.4909 -2.5115 0.0119 9 6 1.1410 -2.8990 -1.4018 10 8 1.4510 -2.1741 -2.3235 11 7 0.4847 -4.0512 -1.6419 12 6 0.1451 -4.4281 -3.0163 13 6 -0.5918 -5.7689 -3.0102 14 6 0.2548 -6.8141 -2.2811 15 6 -0.8373 -6.2248 -4.4531 16 7 -1.7057 -7.4125 -4.4232 17 6 -1.3701 -8.5485 -5.1101 18 1 -1.7295 -9.5095 -4.7728 19 6 -0.5682 -8.4650 -6.2400 20 7 -0.3955 -7.3064 -6.8404 21 14 0.2662 -9.9968 -6.9086 22 1 -0.6267 -10.6561 -7.8951 23 1 1.5405 -9.6176 -7.5701 24 1 0.5480 -10.9343 -5.7919 25 6 -2.9455 -7.3431 -3.6336 26 6 -2.5973 -6.8326 -2.2307 27 8 -1.8477 -5.6206 -2.3434 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6965 2.1378 -0.0008 32 1 4.1582 2.0755 0.0001 33 1 4.1586 -2.0748 0.0030 34 1 2.1320 -3.2764 0.4502 35 1 0.5779 -2.4217 0.6005 36 1 0.2378 -4.6315 -0.9048 37 1 -0.4962 -3.6635 -3.4548 38 1 1.0583 -4.5177 -3.6047 39 1 0.4274 -6.4901 -1.2547 40 1 -0.2706 -7.7691 -2.2775 41 1 1.2110 -6.9278 -2.7919 42 1 -1.3259 -5.4269 -5.0121 43 1 0.1125 -6.4757 -4.9254 44 1 0.1646 -7.2481 -7.6301 45 1 -3.6463 -6.6577 -4.1101 46 1 -3.3918 -8.3350 -3.5630 47 1 -3.5151 -6.6428 -1.6741 48 1 -2.0029 -7.5820 -1.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108004613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:44 Heat of formation + Delta-G solvation = -23.698409 kcal Electronic energy + Delta-G solvation = -29132.980945 eV Core-core repulsion = 25188.644144 eV Total energy + Delta-G solvation = -3944.336801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70714 -39.60742 -38.69425 -35.04862 -34.52124 -34.34360 -32.70369 -31.71475 -31.28559 -28.84113 -28.00001 -27.71530 -26.37592 -25.34224 -23.27615 -23.01112 -22.06586 -21.17576 -20.25381 -18.73662 -17.32917 -16.97198 -16.95828 -16.60324 -16.03050 -15.70017 -15.22869 -14.95496 -14.80074 -14.50342 -14.26288 -14.06254 -13.66920 -13.60242 -13.39434 -13.21909 -13.05598 -12.99508 -12.82886 -12.72981 -12.57037 -12.11826 -11.76673 -11.62952 -11.55100 -11.22956 -11.04958 -10.85350 -10.69495 -10.35578 -10.29820 -10.04760 -9.90290 -9.60686 -9.58234 -9.53238 -9.13749 -9.03173 -8.86656 -8.57265 -6.77084 -5.87947 -3.31835 0.95475 1.13080 2.71419 3.25640 3.31913 3.39092 3.40180 3.73062 4.20758 4.24925 4.40643 4.44564 4.52583 4.68210 4.71048 4.92860 5.11810 5.12841 5.17279 5.25523 5.30676 5.38053 5.43687 5.45124 5.48151 5.61895 5.62792 5.77532 5.87320 5.89647 5.91555 5.98186 6.05744 6.09561 6.18316 6.27017 6.41200 6.53760 6.56672 6.64663 6.71631 6.78381 7.03083 7.42775 7.62465 7.67464 7.83926 7.84759 8.29570 8.32789 9.07354 9.70377 10.27625 11.20074 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.002557 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.925960 B =10949.507566 C =11688.343364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.175 4.175 4 C 0.097 3.903 5 N -0.490 5.490 6 C 0.115 3.885 7 C -0.116 4.116 8 C -0.102 4.102 9 C 0.510 3.490 10 O -0.536 6.536 11 N -0.718 5.718 12 C 0.140 3.860 13 C 0.078 3.922 14 C -0.161 4.161 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 11.213 17.650 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.033 4.033 3 C -0.195 4.195 4 C -0.060 4.060 5 N -0.199 5.199 6 C -0.042 4.042 7 C -0.119 4.119 8 C -0.142 4.142 9 C 0.295 3.705 10 O -0.413 6.413 11 N -0.370 5.370 12 C 0.016 3.984 13 C 0.037 3.963 14 C -0.219 4.219 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.195 11.923 16.866 20.901 hybrid contribution -0.617 -1.326 -0.323 1.497 sum 2.578 10.598 16.542 19.814 Atomic orbital electron populations 1.20896 0.90367 1.03032 1.03455 1.20143 0.96699 0.92471 0.93966 1.21981 0.95624 0.98460 1.03420 1.22702 0.91774 0.96220 0.95259 1.67672 1.41095 0.98451 1.12640 1.22590 0.90849 0.96327 0.94456 1.20155 0.94941 0.94262 1.02504 1.20625 1.02282 0.95519 0.95779 1.20381 0.78117 0.81219 0.90741 1.90738 1.53288 1.51434 1.45849 1.46035 1.58314 1.22476 1.10192 1.21337 0.99204 0.95501 0.82324 1.22545 0.83623 0.93108 0.97005 1.22202 1.00682 1.00546 0.98472 1.21283 0.97727 0.88886 0.88756 1.43994 1.18419 1.12897 1.56105 1.19135 1.29112 0.85455 1.04739 0.91458 1.25058 1.01937 0.96789 0.95708 1.70007 1.40713 1.23643 1.20160 0.86301 0.79116 0.82574 0.78808 1.21309 1.21443 1.20459 1.21600 0.90068 0.99072 0.91026 1.23031 0.94714 0.87153 0.98269 1.87814 1.31525 1.32392 1.78653 0.89963 0.90964 0.91064 0.84923 0.82941 0.83000 0.87729 0.87639 0.76339 0.90917 0.90047 0.93966 0.90777 0.91854 0.95299 0.88595 0.93398 0.95682 0.92047 0.90212 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.68 36.01 0.35 -0.70 16 2 C -0.02 -0.26 5.92 -104.32 -0.62 -0.88 16 3 C -0.18 -1.70 9.82 -39.44 -0.39 -2.09 16 4 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 5 N -0.49 -6.16 10.36 -13.25 -0.14 -6.30 16 6 C 0.11 1.35 10.84 -17.55 -0.19 1.16 16 7 C -0.12 -1.29 4.39 -104.49 -0.46 -1.75 16 8 C -0.10 -0.94 5.39 -29.04 -0.16 -1.10 16 9 C 0.51 6.82 7.82 -10.99 -0.09 6.74 16 10 O -0.54 -9.52 16.03 5.55 0.09 -9.43 16 11 N -0.72 -9.43 5.20 -60.29 -0.31 -9.75 16 12 C 0.14 2.31 4.85 -4.04 -0.02 2.29 16 13 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 14 C -0.16 -2.62 7.86 37.16 0.29 -2.33 16 15 C 0.16 3.65 4.11 -3.53 -0.01 3.64 16 16 N -0.59 -14.10 2.57 -171.82 -0.44 -14.54 16 17 C -0.26 -6.68 9.65 -15.06 -0.15 -6.83 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.44 11.14 55.49 0.62 -24.82 16 21 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.11 2.18 6.73 -3.53 -0.02 2.15 16 26 C 0.05 0.77 6.60 37.31 0.25 1.01 16 27 O -0.38 -6.77 10.18 -35.23 -0.36 -7.13 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.54 6.16 -51.93 -0.32 0.22 16 30 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.10 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.11 0.75 6.29 -51.93 -0.33 0.43 16 36 H 0.40 4.43 6.98 -40.82 -0.28 4.14 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 40 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.77 6.26 -51.93 -0.33 0.44 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -32.77 382.97 -8.63 -41.40 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.26 Total: 5.29 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.57 Total: 3.49 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.27 Total: -55.40 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.27 Total: -16.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.77 -8.63 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.704 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds