Wall clock time and date at job start Tue Mar 31 2020 17:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38673 * 120.78658 * 2 1 4 4 C 1.38186 * 119.16376 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76056 * 359.97224 * 4 3 2 6 6 C 1.31851 * 121.72643 * 0.02562 * 5 4 3 7 7 C 1.38220 * 120.76819 * 359.74635 * 6 5 4 8 8 C 1.50695 * 120.42266 * 180.26252 * 7 6 5 9 9 C 1.50702 * 109.47459 * 265.22227 * 8 7 6 10 10 O 1.21286 * 119.99232 * 0.02562 * 9 8 7 11 11 N 1.34764 * 120.00400 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46986 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.51264 * 305.09603 * 13 12 11 15 15 C 1.53300 * 109.50865 * 184.99852 * 13 12 11 16 16 N 1.47161 * 108.38263 * 187.77095 * 15 13 12 17 17 C 1.36929 * 120.98286 * 230.51327 * 16 15 13 18 18 H 1.08002 * 119.99803 * 153.32983 * 17 16 15 19 19 C 1.38813 * 120.00221 * 333.32723 * 17 16 15 20 20 N 1.31624 * 119.99964 * 343.55188 * 19 17 16 21 21 Si 1.86806 * 120.00170 * 163.54711 * 19 17 16 22 22 H 1.48497 * 109.46712 * 90.00176 * 21 19 17 23 23 H 1.48496 * 109.46808 * 210.00256 * 21 19 17 24 24 H 1.48497 * 109.46952 * 330.00187 * 21 19 17 25 25 C 1.47151 * 118.03196 * 50.53778 * 16 15 13 26 26 C 1.53295 * 108.38507 * 309.46304 * 25 16 15 27 27 O 1.42954 * 109.22356 * 52.30361 * 26 25 16 28 28 H 1.09004 * 109.47236 * 90.00396 * 1 2 3 29 29 H 1.08997 * 109.47053 * 210.00462 * 1 2 3 30 30 H 1.09006 * 109.47573 * 330.00489 * 1 2 3 31 31 H 1.08005 * 120.41756 * 359.94806 * 3 2 1 32 32 H 1.07992 * 119.61750 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.61634 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47417 * 25.22338 * 8 7 6 35 35 H 1.09005 * 109.47356 * 145.22620 * 8 7 6 36 36 H 0.97002 * 120.00234 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.46982 * 299.99745 * 12 11 9 38 38 H 1.08998 * 109.47273 * 59.99970 * 12 11 9 39 39 H 1.09002 * 109.46822 * 60.00536 * 14 13 12 40 40 H 1.09003 * 109.47249 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.47436 * 300.00379 * 14 13 12 42 42 H 1.08993 * 109.68306 * 307.49487 * 15 13 12 43 43 H 1.09000 * 109.67995 * 68.01671 * 15 13 12 44 44 H 0.96995 * 119.99914 * 180.02562 * 20 19 17 45 45 H 1.08991 * 109.68538 * 69.18674 * 25 16 15 46 46 H 1.09007 * 109.68103 * 189.74229 * 25 16 15 47 47 H 1.09001 * 109.51310 * 172.23159 * 26 25 16 48 48 H 1.09004 * 109.51038 * 292.32409 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 0.0005 5 7 4.2403 0.0002 0.0016 6 6 3.5983 -1.1515 0.0017 7 6 2.2167 -1.1909 0.0059 8 6 1.4909 -2.5115 0.0119 9 6 1.1410 -2.8990 -1.4018 10 8 1.4510 -2.1741 -2.3235 11 7 0.4847 -4.0512 -1.6419 12 6 0.1451 -4.4281 -3.0163 13 6 -0.5918 -5.7689 -3.0102 14 6 0.2548 -6.8141 -2.2811 15 6 -0.8373 -6.2248 -4.4531 16 7 -1.7057 -7.4125 -4.4232 17 6 -1.3701 -8.5485 -5.1101 18 1 -1.7295 -9.5095 -4.7728 19 6 -0.5682 -8.4650 -6.2400 20 7 -0.3955 -7.3064 -6.8404 21 14 0.2662 -9.9968 -6.9086 22 1 -0.6267 -10.6561 -7.8951 23 1 1.5405 -9.6176 -7.5701 24 1 0.5480 -10.9343 -5.7919 25 6 -2.9455 -7.3431 -3.6336 26 6 -2.5973 -6.8326 -2.2307 27 8 -1.8477 -5.6206 -2.3434 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6965 2.1378 -0.0008 32 1 4.1582 2.0755 0.0001 33 1 4.1586 -2.0748 0.0030 34 1 2.1320 -3.2764 0.4502 35 1 0.5779 -2.4217 0.6005 36 1 0.2378 -4.6315 -0.9048 37 1 -0.4962 -3.6635 -3.4548 38 1 1.0583 -4.5177 -3.6047 39 1 0.4274 -6.4901 -1.2547 40 1 -0.2706 -7.7691 -2.2775 41 1 1.2110 -6.9278 -2.7919 42 1 -1.3259 -5.4269 -5.0121 43 1 0.1125 -6.4757 -4.9254 44 1 0.1646 -7.2481 -7.6301 45 1 -3.6463 -6.6577 -4.1101 46 1 -3.3918 -8.3350 -3.5630 47 1 -3.5151 -6.6428 -1.6741 48 1 -2.0029 -7.5820 -1.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108004613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:43 Heat of formation + Delta-G solvation = -45.854447 kcal Electronic energy + Delta-G solvation = -29133.941703 eV Core-core repulsion = 25188.644144 eV Total energy + Delta-G solvation = -3945.297559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58185 -40.87810 -39.96301 -36.55048 -35.93497 -35.32044 -33.57622 -33.22459 -32.95624 -29.73600 -29.50144 -28.54802 -27.97684 -26.78430 -24.98305 -23.85707 -23.10250 -22.53679 -21.33341 -20.27464 -18.94784 -18.25104 -17.76098 -17.49600 -17.30919 -16.95446 -16.78368 -16.11659 -16.03081 -15.77274 -15.58322 -15.42685 -15.16513 -14.87648 -14.64419 -14.32759 -14.18691 -14.10863 -13.82404 -13.62028 -13.50524 -13.43757 -13.18166 -12.91698 -12.78057 -12.66157 -12.52588 -12.41912 -12.24468 -12.17280 -11.93704 -11.84035 -11.16667 -11.00919 -10.74770 -10.49321 -10.39130 -10.31989 -10.08705 -9.88372 -8.71129 -7.90053 -5.37152 0.17378 0.35005 1.45148 1.47247 1.56244 1.67488 2.19171 2.48059 2.80177 2.90711 3.25284 3.50934 3.51772 3.71003 3.84234 3.89398 3.96689 4.01182 4.03615 4.09577 4.12464 4.43651 4.47791 4.48561 4.51422 4.58146 4.61022 4.65644 4.72582 4.73769 4.76818 4.81144 4.91624 4.98569 5.05826 5.06410 5.14062 5.21835 5.22131 5.37957 5.41550 5.44813 5.54221 5.61503 5.83217 6.29555 6.38463 6.59898 7.05902 7.06893 7.29428 7.76382 8.30255 9.15471 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.002557 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.925960 B =10949.507566 C =11688.343364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.178 4.178 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.096 3.904 7 C -0.129 4.129 8 C -0.091 4.091 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.705 5.705 12 C 0.151 3.849 13 C 0.095 3.905 14 C -0.153 4.153 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.100 3.900 26 C 0.053 3.947 27 O -0.384 6.384 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.053 0.947 42 H -0.011 1.011 43 H 0.065 0.935 44 H 0.250 0.750 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.118 0.882 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 10.733 20.886 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.072 4.072 5 N -0.229 5.229 6 C -0.061 4.061 7 C -0.131 4.131 8 C -0.130 4.130 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.026 3.974 13 C 0.054 3.946 14 C -0.211 4.211 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.025 4.025 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.176 0.824 32 H 0.193 0.807 33 H 0.181 0.819 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.254 0.746 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.136 0.864 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.674 11.417 20.168 23.329 hybrid contribution -0.551 -1.121 -1.350 1.839 sum 2.123 10.296 18.818 21.555 Atomic orbital electron populations 1.20919 0.89069 1.04815 1.02689 1.20533 0.97852 0.92753 0.93660 1.22317 0.95528 0.99483 1.02408 1.23171 0.92601 0.96561 0.94864 1.67664 1.42145 0.99333 1.13745 1.22892 0.91594 0.96699 0.94902 1.20369 0.94880 0.95293 1.02584 1.20663 1.04032 0.95489 0.92854 1.21116 0.76722 0.80197 0.92056 1.90728 1.55073 1.52827 1.47849 1.45830 1.58177 1.22919 1.08909 1.20937 0.97959 0.94247 0.84261 1.22157 0.84500 0.94116 0.93849 1.22113 0.99434 0.99137 1.00371 1.21052 0.95618 0.87586 0.91693 1.44254 1.20113 1.12405 1.56352 1.19495 1.28288 0.86522 1.04463 0.90833 1.25808 1.03098 0.99292 0.96406 1.70182 1.41786 1.25693 1.20649 0.85305 0.77537 0.79534 0.78264 1.21337 1.22215 1.19010 1.21838 0.88398 0.99672 0.92581 1.23099 0.96349 0.86937 0.96007 1.87826 1.31304 1.33231 1.77942 0.91803 0.89630 0.88994 0.82403 0.80705 0.81925 0.84586 0.84741 0.74575 0.92974 0.91573 0.89861 0.92063 0.92763 0.99257 0.91703 0.94135 0.97128 0.90996 0.86397 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.68 71.24 0.69 -1.10 16 2 C -0.04 -0.78 5.92 -19.67 -0.12 -0.90 16 3 C -0.18 -3.19 9.82 22.36 0.22 -2.97 16 4 C 0.08 1.68 11.18 84.67 0.95 2.62 16 5 N -0.52 -12.83 10.36 -195.85 -2.03 -14.86 16 6 C 0.10 2.16 10.84 84.69 0.92 3.08 16 7 C -0.13 -2.64 4.39 -19.78 -0.09 -2.73 16 8 C -0.09 -1.41 5.39 29.10 0.16 -1.25 16 9 C 0.51 12.88 7.82 87.66 0.69 13.57 16 10 O -0.58 -20.86 16.03 -3.05 -0.05 -20.91 16 11 N -0.71 -17.16 5.20 -463.06 -2.41 -19.57 16 12 C 0.15 5.03 4.85 86.38 0.42 5.44 16 13 C 0.09 3.34 0.78 -10.69 -0.01 3.33 16 14 C -0.15 -4.67 7.86 71.98 0.57 -4.10 16 15 C 0.17 7.93 4.11 86.35 0.35 8.29 16 16 N -0.61 -29.33 2.57 -697.53 -1.79 -31.12 16 17 C -0.26 -13.59 9.65 84.04 0.81 -12.78 16 18 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 19 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 20 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 21 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.10 3.93 6.73 86.35 0.58 4.51 16 26 C 0.05 1.61 6.60 72.08 0.48 2.08 16 27 O -0.38 -12.70 10.18 -148.98 -1.52 -14.22 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.02 6.16 -2.39 -0.01 1.00 16 30 H 0.09 0.97 8.10 -2.38 -0.02 0.95 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.14 1.29 8.06 -2.39 -0.02 1.28 16 35 H 0.13 1.34 6.29 -2.38 -0.01 1.32 16 36 H 0.42 7.61 6.98 -92.71 -0.65 6.96 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 1.84 6.57 -2.39 -0.02 1.83 16 40 H 0.06 2.06 6.12 -2.39 -0.01 2.04 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.06 3.47 6.16 -2.39 -0.01 3.45 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 2.62 7.96 -2.38 -0.02 2.60 16 47 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 48 H 0.06 1.75 6.26 -2.38 -0.01 1.73 16 Total: -1.00 -75.08 382.97 1.84 -73.24 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.33 Total: 21.65 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.03 Total: 14.75 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -5.98 Total: -120.45 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.56 Total: -35.12 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.08 1.84 -73.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.387 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds