Wall clock time and date at job start Tue Mar 31 2020 17:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38617 * 120.75573 * 2 1 4 4 C 1.38559 * 119.35413 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.55265 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.89793 * 0.02562 * 4 3 2 7 7 C 1.32708 * 121.64222 * 0.02562 * 6 4 3 8 8 C 1.48175 * 119.71996 * 179.97438 * 7 6 4 9 9 O 1.21515 * 119.99790 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00105 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.51096 * 305.00246 * 12 11 10 14 14 C 1.53290 * 109.51342 * 184.90071 * 12 11 10 15 15 N 1.47157 * 108.38729 * 187.77618 * 14 12 11 16 16 C 1.36929 * 120.97834 * 230.51469 * 15 14 12 17 17 H 1.08007 * 119.99583 * 153.32844 * 16 15 14 18 18 C 1.38810 * 120.00501 * 333.31863 * 16 15 14 19 19 N 1.31618 * 119.99692 * 343.55630 * 18 16 15 20 20 Si 1.86796 * 120.00239 * 163.55208 * 18 16 15 21 21 H 1.48494 * 109.47285 * 90.00431 * 20 18 16 22 22 H 1.48504 * 109.47211 * 210.00466 * 20 18 16 23 23 H 1.48499 * 109.47190 * 330.00032 * 20 18 16 24 24 C 1.47152 * 118.03336 * 50.52978 * 15 14 12 25 25 C 1.53290 * 108.38687 * 309.46930 * 24 15 14 26 26 O 1.42952 * 109.26743 * 52.27912 * 25 24 15 27 27 C 1.38585 * 120.75226 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47124 * 89.99361 * 1 2 3 29 29 H 1.08995 * 109.47040 * 209.99963 * 1 2 3 30 30 H 1.09001 * 109.46459 * 329.99536 * 1 2 3 31 31 H 1.08007 * 120.32711 * 359.96293 * 3 2 1 32 32 H 1.09002 * 109.46950 * 270.02127 * 5 4 3 33 33 H 1.08996 * 109.46730 * 30.02382 * 5 4 3 34 34 H 1.09001 * 109.47095 * 150.02483 * 5 4 3 35 35 H 0.97000 * 119.99971 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46776 * 300.00015 * 11 10 8 37 37 H 1.09000 * 109.46762 * 59.99547 * 11 10 8 38 38 H 1.09000 * 109.47614 * 60.00015 * 13 12 11 39 39 H 1.09009 * 109.46795 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47320 * 299.99468 * 13 12 11 41 41 H 1.09007 * 109.67938 * 307.49921 * 14 12 11 42 42 H 1.09002 * 109.68525 * 68.01190 * 14 12 11 43 43 H 0.97001 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.67771 * 69.19334 * 24 15 14 45 45 H 1.09002 * 109.67758 * 189.74291 * 24 15 14 46 46 H 1.09001 * 109.51632 * 172.22812 * 25 24 15 47 47 H 1.09000 * 109.51495 * 292.32647 * 25 24 15 48 48 H 1.08001 * 120.46995 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 0.0005 7 6 3.6082 -1.1497 -0.0005 8 6 4.3806 -2.4142 -0.0010 9 8 3.7992 -3.4813 -0.0014 10 7 5.7279 -2.3809 0.0001 11 6 6.4916 -3.6312 0.0001 12 6 7.9884 -3.3144 0.0008 13 6 8.3176 -2.3991 -1.1802 14 6 8.7874 -4.6168 -0.1226 15 7 10.2132 -4.3066 0.0684 16 6 11.1547 -4.7396 -0.8265 17 1 12.0782 -4.1924 -0.9460 18 6 10.9226 -5.8821 -1.5801 19 7 9.9753 -6.7237 -1.2243 20 14 11.9544 -6.2248 -3.0990 21 1 13.1487 -7.0203 -2.7170 22 1 11.1465 -6.9870 -4.0847 23 1 12.3883 -4.9394 -3.7030 24 6 10.5971 -3.5176 1.2497 25 6 9.7099 -2.2687 1.3062 26 8 8.3377 -2.6608 1.2234 27 6 2.2157 -1.1910 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6937 2.1366 -0.0006 32 1 4.5632 2.7608 -1.0279 33 1 3.7999 3.2192 0.5134 34 1 5.3264 2.3037 0.5139 35 1 6.1920 -1.5291 0.0008 36 1 6.2418 -4.2094 0.8897 37 1 6.2431 -4.2087 -0.8903 38 1 7.7506 -1.4725 -1.0909 39 1 9.3843 -2.1743 -1.1793 40 1 8.0528 -2.8988 -2.1120 41 1 8.4597 -5.3223 0.6411 42 1 8.6345 -5.0491 -1.1114 43 1 9.8128 -7.5219 -1.7511 44 1 10.4516 -4.1123 2.1515 45 1 11.6430 -3.2216 1.1693 46 1 9.8820 -1.7420 2.2448 47 1 9.9520 -1.6120 0.4706 48 1 1.6958 -2.1376 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108043463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:33 Heat of formation + Delta-G solvation = -25.587243 kcal Electronic energy + Delta-G solvation = -29132.083595 eV Core-core repulsion = 25187.664888 eV Total energy + Delta-G solvation = -3944.418707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85187 -39.43618 -38.52453 -35.02521 -34.49774 -34.24537 -33.03971 -31.53195 -31.22243 -28.31865 -27.92868 -27.82529 -26.66548 -25.83995 -23.91987 -23.19253 -21.50784 -21.21883 -20.27436 -18.72360 -17.80562 -17.10929 -16.66319 -16.19499 -15.82126 -15.47891 -15.21125 -14.99882 -14.57845 -14.39203 -14.19782 -13.97356 -13.72521 -13.67430 -13.45740 -13.17192 -12.99220 -12.89757 -12.78206 -12.58802 -12.46306 -12.25172 -11.95467 -11.85768 -11.53946 -11.16233 -10.99611 -10.79960 -10.64199 -10.31726 -10.28002 -10.23596 -9.96062 -9.80269 -9.66234 -9.48490 -9.22954 -9.00444 -8.76470 -8.52254 -6.71558 -5.83225 -3.26796 0.49024 0.94115 2.72861 3.21237 3.34825 3.42096 3.43504 3.71288 3.91132 4.25697 4.29142 4.44858 4.51464 4.69791 4.80055 5.01529 5.13490 5.15880 5.18140 5.28199 5.32358 5.35908 5.40078 5.49882 5.51774 5.55237 5.72581 5.73619 5.81765 5.95059 5.96787 5.98118 6.04426 6.12956 6.17658 6.33710 6.37714 6.50992 6.61064 6.71004 6.79305 6.85901 7.09588 7.47943 7.49928 7.72058 7.80552 7.92729 8.32771 8.35014 9.12230 9.75338 10.32979 11.24798 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002683 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.603117 B =10432.565992 C =10959.295088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.157 4.157 4 C 0.129 3.871 5 C -0.104 4.104 6 N -0.462 5.462 7 C 0.096 3.904 8 C 0.564 3.436 9 O -0.538 6.538 10 N -0.694 5.694 11 C 0.136 3.864 12 C 0.079 3.921 13 C -0.163 4.163 14 C 0.161 3.839 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.383 6.383 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.025 0.975 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 18.234 2.330 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.177 4.177 4 C -0.011 4.011 5 C -0.162 4.162 6 N -0.175 5.175 7 C -0.043 4.043 8 C 0.348 3.652 9 O -0.416 6.416 10 N -0.345 5.345 11 C 0.013 3.987 12 C 0.038 3.962 13 C -0.220 4.220 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.393 17.280 2.388 23.264 hybrid contribution 0.084 0.047 -0.938 0.943 sum -15.309 17.327 1.451 23.167 Atomic orbital electron populations 1.20834 0.89690 1.03579 1.03122 1.20339 0.97087 0.92536 0.95551 1.22035 0.94777 0.98826 1.02049 1.21304 0.91176 0.93810 0.94768 1.20738 1.00541 0.91526 1.03346 1.67412 1.41059 0.97587 1.11455 1.21211 0.91691 0.92094 0.99290 1.17870 0.82610 0.87238 0.77503 1.90784 1.70085 1.29921 1.50775 1.45901 1.05374 1.11206 1.72046 1.21439 0.88723 0.85439 1.03115 1.22536 0.92743 0.96369 0.84580 1.22210 1.02959 0.98534 0.98311 1.21285 0.82658 0.89787 1.02883 1.43986 1.02204 1.62125 1.23092 1.19137 0.99491 1.05181 1.14466 0.91481 1.25047 0.98826 0.95069 1.00601 1.70010 1.34301 1.11533 1.38721 0.86301 0.79603 0.77921 0.82980 1.21347 1.21476 1.20477 1.21603 0.97021 0.92097 0.91001 1.23026 0.82647 0.97158 1.00331 1.87832 1.26483 1.78080 1.37866 1.22006 0.93845 0.99562 0.98874 0.90293 0.90662 0.90871 0.84468 0.90184 0.90618 0.90045 0.74999 0.90557 0.89749 0.93730 0.90771 0.91919 0.95228 0.88568 0.93438 0.95660 0.92057 0.90221 0.93384 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.06 36.01 0.36 -0.31 16 2 C -0.05 -0.43 5.91 -104.35 -0.62 -1.05 16 3 C -0.16 -1.32 9.45 -39.32 -0.37 -1.69 16 4 C 0.13 1.31 6.78 -82.60 -0.56 0.75 16 5 C -0.10 -0.73 10.17 36.01 0.37 -0.37 16 6 N -0.46 -6.03 9.45 -6.06 -0.06 -6.09 16 7 C 0.10 1.35 6.75 -83.01 -0.56 0.79 16 8 C 0.56 9.39 7.81 -12.18 -0.10 9.29 16 9 O -0.54 -10.29 16.32 5.35 0.09 -10.20 16 10 N -0.69 -11.38 5.18 -61.14 -0.32 -11.69 16 11 C 0.14 2.47 4.85 -4.04 -0.02 2.45 16 12 C 0.08 1.52 0.78 -90.47 -0.07 1.45 16 13 C -0.16 -2.91 7.86 37.16 0.29 -2.62 16 14 C 0.16 3.79 4.11 -3.53 -0.01 3.78 16 15 N -0.59 -14.53 2.57 -171.83 -0.44 -14.97 16 16 C -0.25 -6.78 9.65 -15.06 -0.15 -6.93 16 17 H 0.07 1.76 7.88 -52.48 -0.41 1.34 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.81 11.14 55.49 0.62 -25.19 16 20 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.11 2.27 6.74 -3.54 -0.02 2.25 16 25 C 0.05 0.83 6.59 37.31 0.25 1.07 16 26 O -0.38 -7.38 10.17 -35.23 -0.36 -7.74 16 27 C -0.12 -1.45 9.34 -39.06 -0.36 -1.81 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.41 6.44 6.32 -40.82 -0.26 6.18 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.04 0.70 6.58 -51.93 -0.34 0.36 16 39 H 0.07 1.43 6.12 -51.92 -0.32 1.11 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.10 2.50 6.16 -51.93 -0.32 2.18 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 0.83 6.26 -51.93 -0.33 0.51 16 48 H 0.15 1.69 7.64 -52.49 -0.40 1.29 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -31.89 386.39 -8.75 -40.64 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.41 Total: 6.00 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.66 Total: 7.07 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.20 Total: -57.94 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.27 Total: -17.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.89 -8.75 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108043463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.049 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds