Wall clock time and date at job start Tue Mar 31 2020 17:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38617 * 120.75573 * 2 1 4 4 C 1.38559 * 119.35413 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.55265 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.89793 * 0.02562 * 4 3 2 7 7 C 1.32708 * 121.64222 * 0.02562 * 6 4 3 8 8 C 1.48175 * 119.71996 * 179.97438 * 7 6 4 9 9 O 1.21515 * 119.99790 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00105 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.51096 * 305.00246 * 12 11 10 14 14 C 1.53290 * 109.51342 * 184.90071 * 12 11 10 15 15 N 1.47157 * 108.38729 * 187.77618 * 14 12 11 16 16 C 1.36929 * 120.97834 * 230.51469 * 15 14 12 17 17 H 1.08007 * 119.99583 * 153.32844 * 16 15 14 18 18 C 1.38810 * 120.00501 * 333.31863 * 16 15 14 19 19 N 1.31618 * 119.99692 * 343.55630 * 18 16 15 20 20 Si 1.86796 * 120.00239 * 163.55208 * 18 16 15 21 21 H 1.48494 * 109.47285 * 90.00431 * 20 18 16 22 22 H 1.48504 * 109.47211 * 210.00466 * 20 18 16 23 23 H 1.48499 * 109.47190 * 330.00032 * 20 18 16 24 24 C 1.47152 * 118.03336 * 50.52978 * 15 14 12 25 25 C 1.53290 * 108.38687 * 309.46930 * 24 15 14 26 26 O 1.42952 * 109.26743 * 52.27912 * 25 24 15 27 27 C 1.38585 * 120.75226 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47124 * 89.99361 * 1 2 3 29 29 H 1.08995 * 109.47040 * 209.99963 * 1 2 3 30 30 H 1.09001 * 109.46459 * 329.99536 * 1 2 3 31 31 H 1.08007 * 120.32711 * 359.96293 * 3 2 1 32 32 H 1.09002 * 109.46950 * 270.02127 * 5 4 3 33 33 H 1.08996 * 109.46730 * 30.02382 * 5 4 3 34 34 H 1.09001 * 109.47095 * 150.02483 * 5 4 3 35 35 H 0.97000 * 119.99971 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46776 * 300.00015 * 11 10 8 37 37 H 1.09000 * 109.46762 * 59.99547 * 11 10 8 38 38 H 1.09000 * 109.47614 * 60.00015 * 13 12 11 39 39 H 1.09009 * 109.46795 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47320 * 299.99468 * 13 12 11 41 41 H 1.09007 * 109.67938 * 307.49921 * 14 12 11 42 42 H 1.09002 * 109.68525 * 68.01190 * 14 12 11 43 43 H 0.97001 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.67771 * 69.19334 * 24 15 14 45 45 H 1.09002 * 109.67758 * 189.74291 * 24 15 14 46 46 H 1.09001 * 109.51632 * 172.22812 * 25 24 15 47 47 H 1.09000 * 109.51495 * 292.32647 * 25 24 15 48 48 H 1.08001 * 120.46995 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 0.0005 7 6 3.6082 -1.1497 -0.0005 8 6 4.3806 -2.4142 -0.0010 9 8 3.7992 -3.4813 -0.0014 10 7 5.7279 -2.3809 0.0001 11 6 6.4916 -3.6312 0.0001 12 6 7.9884 -3.3144 0.0008 13 6 8.3176 -2.3991 -1.1802 14 6 8.7874 -4.6168 -0.1226 15 7 10.2132 -4.3066 0.0684 16 6 11.1547 -4.7396 -0.8265 17 1 12.0782 -4.1924 -0.9460 18 6 10.9226 -5.8821 -1.5801 19 7 9.9753 -6.7237 -1.2243 20 14 11.9544 -6.2248 -3.0990 21 1 13.1487 -7.0203 -2.7170 22 1 11.1465 -6.9870 -4.0847 23 1 12.3883 -4.9394 -3.7030 24 6 10.5971 -3.5176 1.2497 25 6 9.7099 -2.2687 1.3062 26 8 8.3377 -2.6608 1.2234 27 6 2.2157 -1.1910 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6937 2.1366 -0.0006 32 1 4.5632 2.7608 -1.0279 33 1 3.7999 3.2192 0.5134 34 1 5.3264 2.3037 0.5139 35 1 6.1920 -1.5291 0.0008 36 1 6.2418 -4.2094 0.8897 37 1 6.2431 -4.2087 -0.8903 38 1 7.7506 -1.4725 -1.0909 39 1 9.3843 -2.1743 -1.1793 40 1 8.0528 -2.8988 -2.1120 41 1 8.4597 -5.3223 0.6411 42 1 8.6345 -5.0491 -1.1114 43 1 9.8128 -7.5219 -1.7511 44 1 10.4516 -4.1123 2.1515 45 1 11.6430 -3.2216 1.1693 46 1 9.8820 -1.7420 2.2448 47 1 9.9520 -1.6120 0.4706 48 1 1.6958 -2.1376 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108043463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:32 Heat of formation + Delta-G solvation = -46.620373 kcal Electronic energy + Delta-G solvation = -29132.995660 eV Core-core repulsion = 25187.664888 eV Total energy + Delta-G solvation = -3945.330772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81387 -40.86816 -39.90551 -36.60905 -36.03088 -35.17653 -33.92711 -33.23222 -32.92644 -29.60007 -29.03041 -28.47539 -28.11132 -27.55311 -25.15746 -24.91044 -22.86927 -22.25708 -21.49356 -20.34651 -19.06382 -18.81998 -17.75911 -17.38213 -17.05241 -16.86701 -16.58921 -16.37784 -16.13118 -15.70130 -15.55742 -15.33582 -15.21642 -14.81940 -14.64735 -14.41950 -14.12201 -14.01796 -13.74841 -13.50827 -13.40456 -13.20744 -13.06799 -12.99771 -12.94500 -12.78189 -12.59564 -12.55130 -12.43002 -12.17836 -11.97278 -11.86782 -11.50471 -11.13234 -10.78170 -10.57120 -10.51861 -10.50407 -10.27932 -9.94702 -8.71650 -7.89713 -5.36909 -0.39997 0.18450 1.45495 1.47487 1.56748 1.62744 1.96304 2.47926 2.74986 2.79085 3.01527 3.25215 3.48243 3.63231 3.67444 3.90108 3.98061 3.99583 4.03348 4.08168 4.35335 4.40325 4.45124 4.51511 4.52343 4.59063 4.64921 4.69162 4.73606 4.75870 4.79287 4.85494 4.94109 5.00821 5.03501 5.09712 5.14181 5.19155 5.26892 5.27987 5.29013 5.32458 5.51917 5.61318 5.67680 6.29178 6.33518 6.36740 6.79903 7.05434 7.06909 7.75638 8.30422 9.16238 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002683 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.603117 B =10432.565992 C =10959.295088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.141 4.141 4 C 0.117 3.883 5 C -0.102 4.102 6 N -0.484 5.484 7 C 0.066 3.934 8 C 0.562 3.438 9 O -0.573 6.573 10 N -0.688 5.688 11 C 0.145 3.855 12 C 0.094 3.906 13 C -0.152 4.152 14 C 0.170 3.830 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.103 3.897 25 C 0.052 3.948 26 O -0.387 6.387 27 C -0.133 4.133 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.179 0.821 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.418 0.582 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.056 0.944 41 H -0.006 1.006 42 H 0.068 0.932 43 H 0.250 0.750 44 H 0.013 0.987 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.060 0.940 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 22.228 2.142 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.023 4.023 5 C -0.159 4.159 6 N -0.197 5.197 7 C -0.070 4.070 8 C 0.348 3.652 9 O -0.453 6.453 10 N -0.339 5.339 11 C 0.021 3.979 12 C 0.053 3.947 13 C -0.209 4.209 14 C 0.043 3.957 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.023 4.023 25 C -0.025 4.025 26 O -0.307 6.307 27 C -0.154 4.154 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.196 0.804 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.013 0.987 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.078 0.922 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.325 21.318 2.219 26.943 hybrid contribution 0.350 -1.106 -0.795 1.406 sum -15.975 20.212 1.424 25.802 Atomic orbital electron populations 1.20926 0.87089 1.04789 1.04207 1.20735 0.98847 0.91641 0.94112 1.22503 0.94172 1.00179 0.99224 1.21959 0.92553 0.93829 0.93981 1.20842 1.00198 0.90556 1.04277 1.67339 1.41893 0.98023 1.12485 1.20818 0.92149 0.91363 1.02710 1.18373 0.82452 0.88139 0.76267 1.90748 1.70638 1.31580 1.52342 1.45743 1.05461 1.10471 1.72215 1.21156 0.88445 0.86220 1.02091 1.22186 0.92467 0.94444 0.85597 1.22094 1.02641 0.99102 0.97100 1.21028 0.83309 0.91363 1.00005 1.44237 1.02203 1.62409 1.24215 1.19496 0.99889 1.04927 1.14578 0.90834 1.25816 1.00253 0.95148 1.03352 1.70180 1.36229 1.11994 1.39829 0.85284 0.77836 0.77933 0.79452 1.21218 1.22105 1.19152 1.21813 0.98668 0.92779 0.89002 1.23116 0.80937 0.95683 1.02795 1.87842 1.27497 1.77712 1.37643 1.22098 0.93175 1.00740 0.99387 0.89100 0.90681 0.88501 0.80382 0.89154 0.87713 0.90993 0.74350 0.92081 0.90514 0.91081 0.91679 0.92501 0.98749 0.91355 0.94044 0.96894 0.90782 0.86541 0.92207 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.06 71.24 0.72 -0.23 16 2 C -0.05 -0.72 5.91 -19.69 -0.12 -0.83 16 3 C -0.14 -1.85 9.45 22.44 0.21 -1.64 16 4 C 0.12 2.08 6.78 42.68 0.29 2.37 16 5 C -0.10 -1.09 10.17 71.24 0.72 -0.36 16 6 N -0.48 -12.16 9.45 -173.08 -1.64 -13.79 16 7 C 0.07 1.89 6.75 41.91 0.28 2.17 16 8 C 0.56 19.43 7.81 86.88 0.68 20.11 16 9 O -0.57 -23.15 16.32 -3.76 -0.06 -23.21 16 10 N -0.69 -23.08 5.18 -465.65 -2.41 -25.49 16 11 C 0.15 5.52 4.85 86.38 0.42 5.94 16 12 C 0.09 3.71 0.78 -10.70 -0.01 3.70 16 13 C -0.15 -5.38 7.86 71.98 0.57 -4.81 16 14 C 0.17 8.40 4.11 86.35 0.35 8.76 16 15 N -0.61 -30.41 2.57 -697.53 -1.79 -32.20 16 16 C -0.26 -14.00 9.65 84.03 0.81 -13.19 16 17 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 18 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 19 N -0.94 -55.78 11.14 21.65 0.24 -55.54 16 20 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C 0.10 4.24 6.74 86.35 0.58 4.82 16 25 C 0.05 1.75 6.59 72.08 0.48 2.23 16 26 O -0.39 -14.70 10.17 -148.98 -1.52 -16.21 16 27 C -0.13 -3.11 9.34 22.61 0.21 -2.90 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 31 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 12.94 6.32 -92.71 -0.59 12.36 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 37 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.07 2.13 6.58 -2.39 -0.02 2.11 16 39 H 0.06 2.44 6.12 -2.38 -0.01 2.42 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 42 H 0.07 3.75 6.16 -2.39 -0.01 3.74 16 43 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 46 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.06 1.92 6.26 -2.39 -0.01 1.90 16 48 H 0.14 3.35 7.64 -2.91 -0.02 3.33 16 Total: -1.00 -72.58 386.39 1.86 -70.72 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.38 Total: 25.31 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.62 Total: 23.75 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.60 Total: -127.02 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.58 Total: -39.42 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.58 1.86 -70.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108043463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.103 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds