Wall clock time and date at job start Tue Mar 31 2020 17:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38608 * 120.32407 * 2 1 4 4 N 1.31492 * 120.89797 * 179.97438 * 3 2 1 5 5 C 1.32743 * 121.64583 * 359.97438 * 4 3 2 6 6 C 1.48164 * 119.72452 * 180.02562 * 5 4 3 7 7 O 1.21518 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99852 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99795 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53009 * 109.55147 * 60.13157 * 10 9 8 12 12 C 1.53290 * 109.51589 * 180.25438 * 10 9 8 13 13 N 1.47232 * 108.40967 * 172.23172 * 12 10 9 14 14 C 1.36937 * 121.03256 * 129.46000 * 13 12 10 15 15 H 1.07999 * 119.99830 * 333.77469 * 14 13 12 16 16 C 1.38814 * 119.99671 * 153.77042 * 14 13 12 17 17 N 1.31617 * 119.99660 * 160.02496 * 16 14 13 18 18 Si 1.86793 * 120.00266 * 340.02129 * 16 14 13 19 19 H 1.48503 * 109.46760 * 91.88567 * 18 16 14 20 20 H 1.48497 * 109.47347 * 211.88792 * 18 16 14 21 21 H 1.48498 * 109.47201 * 331.89168 * 18 16 14 22 22 C 1.47155 * 117.98347 * 309.49012 * 13 12 10 23 23 C 1.53294 * 108.41729 * 50.51829 * 22 13 12 24 24 O 1.42960 * 109.51742 * 300.00673 * 10 9 8 25 25 C 1.39270 * 120.55407 * 0.27788 * 5 4 3 26 26 C 1.38585 * 120.32266 * 179.97438 * 2 1 3 27 27 C 1.50695 * 120.75687 * 0.04257 * 26 2 1 28 28 H 1.09000 * 109.46939 * 90.00147 * 1 2 3 29 29 H 1.08999 * 109.47041 * 210.00664 * 1 2 3 30 30 H 1.09001 * 109.46679 * 330.00209 * 1 2 3 31 31 H 1.07997 * 119.54612 * 359.95056 * 3 2 1 32 32 H 0.96992 * 120.00110 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47116 * 60.00866 * 9 8 6 34 34 H 1.08996 * 109.47601 * 300.00641 * 9 8 6 35 35 H 1.08996 * 109.46656 * 299.86994 * 11 10 9 36 36 H 1.08998 * 109.46877 * 59.87220 * 11 10 9 37 37 H 1.09001 * 109.46700 * 179.87487 * 11 10 9 38 38 H 1.09001 * 109.68378 * 291.95518 * 12 10 9 39 39 H 1.09000 * 109.68200 * 52.50646 * 12 10 9 40 40 H 0.97002 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.68049 * 290.77118 * 22 13 12 42 42 H 1.09003 * 109.67731 * 170.25941 * 22 13 12 43 43 H 1.08998 * 109.51349 * 67.59796 * 23 22 13 44 44 H 1.08996 * 109.51070 * 187.70400 * 23 22 13 45 45 H 1.08004 * 120.47115 * 179.70375 * 25 5 4 46 46 H 1.09001 * 109.47330 * 89.99970 * 27 26 2 47 47 H 1.08999 * 109.47589 * 210.00109 * 27 26 2 48 48 H 1.09004 * 109.47275 * 330.00029 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0866 0.0015 6 6 5.7097 0.1511 0.0026 7 8 6.3626 -0.8738 0.0031 8 7 6.3321 1.3466 0.0021 9 6 7.7957 1.4104 0.0037 10 6 8.2424 2.8737 0.0033 11 6 7.7037 3.5739 1.2526 12 6 9.7738 2.9416 -0.0013 13 7 10.1764 4.3451 -0.1905 14 6 11.0841 4.9380 0.6460 15 1 11.2011 4.5786 1.6577 16 6 11.8538 6.0010 0.1935 17 7 12.4219 6.8163 1.0565 18 14 12.0833 6.2741 -1.6400 19 1 11.0328 7.1980 -2.1381 20 1 13.4221 6.8666 -1.8885 21 1 11.9773 4.9747 -2.3511 22 6 9.5733 5.0922 -1.3056 23 6 8.0516 4.9196 -1.2373 24 8 7.7388 3.5265 -1.1645 25 6 3.5923 -1.1518 -0.0037 26 6 2.2067 -1.1963 0.0005 27 6 1.4780 -2.5153 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6648 2.1305 -0.0008 32 1 5.8111 2.1647 0.0013 33 1 8.1822 0.9120 -0.8853 34 1 8.1801 0.9137 0.8946 35 1 6.6147 3.5291 1.2529 36 1 8.0882 3.0757 2.1426 37 1 8.0246 4.6156 1.2520 38 1 10.1605 2.5739 0.9491 39 1 10.1657 2.3343 -0.8173 40 1 12.9600 7.5589 0.7404 41 1 9.9450 4.7014 -2.2529 42 1 9.8271 6.1487 -1.2195 43 1 7.6671 5.4258 -0.3519 44 1 7.5960 5.3497 -2.1292 45 1 4.1695 -2.0647 -0.0077 46 1 1.3029 -2.8334 -1.0276 47 1 2.0809 -3.2637 0.5144 48 1 0.5229 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108089502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:47 Heat of formation + Delta-G solvation = -19.006893 kcal Electronic energy + Delta-G solvation = -28895.587502 eV Core-core repulsion = 24951.454140 eV Total energy + Delta-G solvation = -3944.133362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97209 -39.67727 -38.74968 -35.26798 -34.96412 -34.40371 -32.76475 -32.08619 -31.38878 -28.93410 -28.39282 -27.80843 -26.52620 -25.78127 -23.20340 -23.12544 -23.02994 -21.43819 -20.27323 -19.06675 -17.96920 -17.30098 -16.90455 -16.09732 -15.68532 -15.58420 -15.45678 -15.37389 -15.04250 -14.65925 -14.43313 -14.11025 -13.96207 -13.82195 -13.51043 -13.39611 -13.32646 -13.13075 -13.03770 -12.61972 -12.40413 -12.36378 -12.24069 -11.93829 -11.83665 -11.56463 -11.43769 -10.99514 -10.79379 -10.44529 -10.31169 -10.28152 -9.82656 -9.77279 -9.62733 -9.53249 -9.38352 -9.31045 -8.92709 -8.57741 -7.02556 -5.99560 -3.36561 0.38111 0.88101 2.61198 3.07954 3.27599 3.46076 3.49339 3.63141 3.93115 4.06861 4.25159 4.40141 4.45456 4.48162 4.49530 4.75817 4.94541 4.98359 5.04134 5.12630 5.16300 5.21542 5.26002 5.30627 5.33936 5.41667 5.49620 5.52768 5.66895 5.74269 5.81198 5.84972 5.89093 5.92387 6.01397 6.09915 6.25607 6.27574 6.29519 6.46228 6.48917 6.51884 6.59924 6.76438 7.36367 7.65403 7.67092 7.83966 8.18735 8.25898 8.83922 9.64793 10.01080 11.15997 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002373 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.449007 B =11797.998453 C =12155.899894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.102 3.898 4 N -0.457 5.457 5 C 0.079 3.921 6 C 0.567 3.433 7 O -0.540 6.540 8 N -0.695 5.695 9 C 0.136 3.864 10 C 0.087 3.913 11 C -0.168 4.168 12 C 0.131 3.869 13 N -0.604 5.604 14 C -0.259 4.259 15 H 0.089 0.911 16 C 0.023 3.977 17 N -0.907 5.907 18 Si 0.884 3.116 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.089 3.911 23 C 0.046 3.954 24 O -0.379 6.379 25 C -0.109 4.109 26 C -0.054 4.054 27 C -0.118 4.118 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.345 -14.139 -2.201 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.058 4.058 4 N -0.168 5.168 5 C -0.058 4.058 6 C 0.351 3.649 7 O -0.418 6.418 8 N -0.346 5.346 9 C 0.012 3.988 10 C 0.046 3.954 11 C -0.225 4.225 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.387 4.387 15 H 0.106 0.894 16 C -0.176 4.176 17 N -0.550 5.550 18 Si 0.715 3.285 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.196 1.196 22 C -0.037 4.037 23 C -0.032 4.032 24 O -0.298 6.298 25 C -0.130 4.130 26 C -0.061 4.061 27 C -0.175 4.175 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.165 0.835 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.309 -14.012 -2.285 28.151 hybrid contribution -0.228 0.199 -0.917 0.965 sum -24.536 -13.813 -3.202 28.339 Atomic orbital electron populations 1.20826 0.89935 1.03491 1.02915 1.21029 0.97775 0.93653 0.99958 1.22700 0.89294 0.97648 0.96144 1.67563 1.08673 1.30272 1.10286 1.21148 0.94296 0.89601 1.00775 1.17858 0.85772 0.84028 0.77215 1.90778 1.65899 1.34214 1.50883 1.45782 1.07826 1.08646 1.72330 1.21435 0.79165 0.95183 1.03039 1.22222 0.96234 0.90640 0.86316 1.22267 0.99810 1.03309 0.97156 1.21477 0.90367 0.87109 1.00614 1.44319 1.48474 1.06628 1.33404 1.18894 1.13108 1.13360 0.93314 0.89388 1.25242 0.97557 0.97478 0.97311 1.69820 1.35975 1.15732 1.33460 0.86966 0.76078 0.77955 0.87521 1.21640 1.23097 1.19563 1.22031 0.92158 0.97935 0.91549 1.23084 0.96937 0.81954 1.01216 1.87852 1.77100 1.22626 1.42225 1.22006 0.94123 0.99142 0.97723 1.20199 0.93255 0.95860 0.96826 1.20884 1.00436 0.93010 1.03148 0.90487 0.90792 0.90862 0.82089 0.74784 0.90530 0.89769 0.93131 0.91790 0.90192 0.90773 0.94803 0.92691 0.94837 0.90117 0.92533 0.89706 0.83450 0.90268 0.90737 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 9.65 36.01 0.35 -0.13 16 2 C -0.12 -0.92 5.91 -104.35 -0.62 -1.53 16 3 C 0.10 0.92 10.86 -17.56 -0.19 0.73 16 4 N -0.46 -5.44 9.54 -9.80 -0.09 -5.54 16 5 C 0.08 1.02 6.75 -83.01 -0.56 0.46 16 6 C 0.57 8.49 7.81 -12.18 -0.10 8.39 16 7 O -0.54 -9.31 16.32 5.35 0.09 -9.22 16 8 N -0.69 -10.07 5.14 -61.15 -0.31 -10.39 16 9 C 0.14 2.06 4.82 -4.04 -0.02 2.04 16 10 C 0.09 1.46 0.76 -90.47 -0.07 1.39 16 11 C -0.17 -2.70 7.92 37.16 0.29 -2.40 16 12 C 0.13 2.57 5.41 -3.49 -0.02 2.56 16 13 N -0.60 -14.09 2.35 -171.76 -0.40 -14.50 16 14 C -0.26 -7.06 10.10 -15.06 -0.15 -7.22 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.02 0.66 5.26 -17.43 -0.09 0.57 16 17 N -0.91 -27.41 13.97 55.49 0.78 -26.64 16 18 Si 0.88 22.26 24.28 -169.99 -4.13 18.13 16 19 H -0.29 -6.95 6.58 56.52 0.37 -6.57 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 22 C 0.09 1.92 4.38 -3.53 -0.02 1.91 16 23 C 0.05 0.82 6.60 37.31 0.25 1.07 16 24 O -0.38 -6.74 9.97 -35.23 -0.35 -7.09 16 25 C -0.11 -1.17 9.34 -39.05 -0.36 -1.53 16 26 C -0.05 -0.44 5.91 -104.35 -0.62 -1.06 16 27 C -0.12 -0.60 9.67 36.00 0.35 -0.25 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.24 6.06 -51.93 -0.31 -0.08 16 30 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.41 5.84 6.54 -40.82 -0.27 5.58 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.48 6.11 -51.93 -0.32 1.16 16 38 H 0.07 1.41 7.96 -51.93 -0.41 1.00 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.03 0.74 6.86 -51.93 -0.36 0.39 16 42 H 0.08 1.87 4.60 -51.93 -0.24 1.63 16 43 H 0.06 1.00 6.25 -51.93 -0.32 0.67 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.15 1.52 7.64 -52.48 -0.40 1.12 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 48 H 0.08 0.27 6.07 -51.93 -0.32 -0.04 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -32.96 375.56 -7.49 -40.46 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.15 Total: 4.14 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.57 Total: 4.98 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.04 Total: -57.06 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.26 Total: -16.32 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.96 -7.49 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108089502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds