Wall clock time and date at job start Tue Mar 31 2020 17:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38608 * 120.32407 * 2 1 4 4 N 1.31492 * 120.89797 * 179.97438 * 3 2 1 5 5 C 1.32743 * 121.64583 * 359.97438 * 4 3 2 6 6 C 1.48164 * 119.72452 * 180.02562 * 5 4 3 7 7 O 1.21518 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99852 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99795 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53009 * 109.55147 * 60.13157 * 10 9 8 12 12 C 1.53290 * 109.51589 * 180.25438 * 10 9 8 13 13 N 1.47232 * 108.40967 * 172.23172 * 12 10 9 14 14 C 1.36937 * 121.03256 * 129.46000 * 13 12 10 15 15 H 1.07999 * 119.99830 * 333.77469 * 14 13 12 16 16 C 1.38814 * 119.99671 * 153.77042 * 14 13 12 17 17 N 1.31617 * 119.99660 * 160.02496 * 16 14 13 18 18 Si 1.86793 * 120.00266 * 340.02129 * 16 14 13 19 19 H 1.48503 * 109.46760 * 91.88567 * 18 16 14 20 20 H 1.48497 * 109.47347 * 211.88792 * 18 16 14 21 21 H 1.48498 * 109.47201 * 331.89168 * 18 16 14 22 22 C 1.47155 * 117.98347 * 309.49012 * 13 12 10 23 23 C 1.53294 * 108.41729 * 50.51829 * 22 13 12 24 24 O 1.42960 * 109.51742 * 300.00673 * 10 9 8 25 25 C 1.39270 * 120.55407 * 0.27788 * 5 4 3 26 26 C 1.38585 * 120.32266 * 179.97438 * 2 1 3 27 27 C 1.50695 * 120.75687 * 0.04257 * 26 2 1 28 28 H 1.09000 * 109.46939 * 90.00147 * 1 2 3 29 29 H 1.08999 * 109.47041 * 210.00664 * 1 2 3 30 30 H 1.09001 * 109.46679 * 330.00209 * 1 2 3 31 31 H 1.07997 * 119.54612 * 359.95056 * 3 2 1 32 32 H 0.96992 * 120.00110 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47116 * 60.00866 * 9 8 6 34 34 H 1.08996 * 109.47601 * 300.00641 * 9 8 6 35 35 H 1.08996 * 109.46656 * 299.86994 * 11 10 9 36 36 H 1.08998 * 109.46877 * 59.87220 * 11 10 9 37 37 H 1.09001 * 109.46700 * 179.87487 * 11 10 9 38 38 H 1.09001 * 109.68378 * 291.95518 * 12 10 9 39 39 H 1.09000 * 109.68200 * 52.50646 * 12 10 9 40 40 H 0.97002 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.68049 * 290.77118 * 22 13 12 42 42 H 1.09003 * 109.67731 * 170.25941 * 22 13 12 43 43 H 1.08998 * 109.51349 * 67.59796 * 23 22 13 44 44 H 1.08996 * 109.51070 * 187.70400 * 23 22 13 45 45 H 1.08004 * 120.47115 * 179.70375 * 25 5 4 46 46 H 1.09001 * 109.47330 * 89.99970 * 27 26 2 47 47 H 1.08999 * 109.47589 * 210.00109 * 27 26 2 48 48 H 1.09004 * 109.47275 * 330.00029 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0866 0.0015 6 6 5.7097 0.1511 0.0026 7 8 6.3626 -0.8738 0.0031 8 7 6.3321 1.3466 0.0021 9 6 7.7957 1.4104 0.0037 10 6 8.2424 2.8737 0.0033 11 6 7.7037 3.5739 1.2526 12 6 9.7738 2.9416 -0.0013 13 7 10.1764 4.3451 -0.1905 14 6 11.0841 4.9380 0.6460 15 1 11.2011 4.5786 1.6577 16 6 11.8538 6.0010 0.1935 17 7 12.4219 6.8163 1.0565 18 14 12.0833 6.2741 -1.6400 19 1 11.0328 7.1980 -2.1381 20 1 13.4221 6.8666 -1.8885 21 1 11.9773 4.9747 -2.3511 22 6 9.5733 5.0922 -1.3056 23 6 8.0516 4.9196 -1.2373 24 8 7.7388 3.5265 -1.1645 25 6 3.5923 -1.1518 -0.0037 26 6 2.2067 -1.1963 0.0005 27 6 1.4780 -2.5153 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6648 2.1305 -0.0008 32 1 5.8111 2.1647 0.0013 33 1 8.1822 0.9120 -0.8853 34 1 8.1801 0.9137 0.8946 35 1 6.6147 3.5291 1.2529 36 1 8.0882 3.0757 2.1426 37 1 8.0246 4.6156 1.2520 38 1 10.1605 2.5739 0.9491 39 1 10.1657 2.3343 -0.8173 40 1 12.9600 7.5589 0.7404 41 1 9.9450 4.7014 -2.2529 42 1 9.8271 6.1487 -1.2195 43 1 7.6671 5.4258 -0.3519 44 1 7.5960 5.3497 -2.1292 45 1 4.1695 -2.0647 -0.0077 46 1 1.3029 -2.8334 -1.0276 47 1 2.0809 -3.2637 0.5144 48 1 0.5229 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108089502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:46 Heat of formation + Delta-G solvation = -42.192105 kcal Electronic energy + Delta-G solvation = -28896.592888 eV Core-core repulsion = 24951.454140 eV Total energy + Delta-G solvation = -3945.138748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81470 -40.99038 -39.95625 -36.81354 -35.99946 -35.56926 -33.76520 -33.43413 -33.12288 -30.00672 -29.51900 -28.55089 -28.06025 -27.07913 -24.82781 -24.14619 -23.77444 -22.94746 -21.31726 -20.53810 -19.09897 -18.80324 -18.10813 -17.42002 -17.35642 -16.77150 -16.41541 -16.31158 -16.04532 -15.92908 -15.73267 -15.50321 -15.39236 -15.27580 -14.67588 -14.29357 -14.20695 -13.90889 -13.82489 -13.72315 -13.65710 -13.56478 -13.36842 -13.27299 -12.98013 -12.70769 -12.60931 -12.45367 -12.37348 -12.17113 -12.10234 -11.56853 -11.48035 -11.27423 -11.07632 -10.56074 -10.49813 -10.48385 -10.24730 -9.86912 -8.96324 -8.18883 -5.52049 -0.40031 0.20376 1.26325 1.40214 1.48336 1.64242 1.98968 2.38086 2.64751 2.80609 2.98997 3.12830 3.21141 3.68001 3.75098 3.77195 3.86551 3.88299 3.91653 3.95360 4.23331 4.25639 4.28137 4.44023 4.50723 4.54170 4.61784 4.65052 4.65584 4.70728 4.72477 4.78354 4.82871 4.90014 4.92174 4.99139 5.01008 5.02511 5.13673 5.22535 5.28220 5.33397 5.38923 5.69766 5.77750 6.08522 6.20982 6.35421 6.77984 6.80895 7.07686 7.53848 7.94821 9.00342 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002373 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.449007 B =11797.998453 C =12155.899894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C 0.092 3.908 4 N -0.477 5.477 5 C 0.049 3.951 6 C 0.565 3.435 7 O -0.572 6.572 8 N -0.691 5.691 9 C 0.143 3.857 10 C 0.098 3.902 11 C -0.160 4.160 12 C 0.125 3.875 13 N -0.616 5.616 14 C -0.244 4.244 15 H 0.059 0.941 16 C -0.033 4.033 17 N -0.953 5.953 18 Si 0.945 3.055 19 H -0.269 1.269 20 H -0.312 1.312 21 H -0.269 1.269 22 C 0.082 3.918 23 C 0.054 3.946 24 O -0.378 6.378 25 C -0.118 4.118 26 C -0.057 4.057 27 C -0.117 4.117 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.418 0.582 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.118 0.882 45 H 0.142 0.858 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 -15.005 -3.423 32.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.068 4.068 4 N -0.189 5.189 5 C -0.087 4.087 6 C 0.352 3.648 7 O -0.452 6.452 8 N -0.342 5.342 9 C 0.019 3.981 10 C 0.057 3.943 11 C -0.217 4.217 12 C 0.000 4.000 13 N -0.341 5.341 14 C -0.373 4.373 15 H 0.077 0.923 16 C -0.228 4.228 17 N -0.599 5.599 18 Si 0.774 3.226 19 H -0.196 1.196 20 H -0.240 1.240 21 H -0.194 1.194 22 C -0.043 4.043 23 C -0.024 4.024 24 O -0.298 6.298 25 C -0.139 4.139 26 C -0.064 4.064 27 C -0.173 4.173 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.205 0.795 32 H 0.256 0.744 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.160 0.840 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.136 -14.896 -3.529 32.031 hybrid contribution 0.811 0.388 -0.477 1.017 sum -27.326 -14.509 -4.005 31.197 Atomic orbital electron populations 1.20946 0.87068 1.04941 1.04095 1.21449 0.99697 0.92747 0.97286 1.23256 0.88520 0.99495 0.95562 1.67487 1.10159 1.30056 1.11176 1.20861 0.93025 0.90827 1.03990 1.18251 0.86955 0.83442 0.76202 1.90745 1.66931 1.35082 1.52429 1.45700 1.07292 1.08854 1.72343 1.21277 0.79922 0.93765 1.03137 1.22066 0.94051 0.91668 0.86515 1.22178 1.01060 1.01566 0.96933 1.21641 0.92555 0.85123 1.00713 1.44392 1.48113 1.08252 1.33329 1.18817 1.13121 1.12601 0.92745 0.92329 1.25826 0.98079 0.97795 1.01094 1.69941 1.37830 1.16862 1.35310 0.85974 0.75838 0.78082 0.82691 1.19582 1.24050 1.19375 1.22122 0.94821 0.96741 0.90621 1.23053 0.94109 0.82194 1.03008 1.87872 1.76744 1.22617 1.42529 1.22099 0.95506 0.98244 0.98071 1.20578 0.92317 0.97751 0.95790 1.20975 1.00956 0.91234 1.04156 0.89171 0.89352 0.89494 0.79483 0.74434 0.91150 0.89108 0.91100 0.91368 0.92578 0.90781 0.94550 0.92880 0.94840 0.91652 0.92266 0.86419 0.83977 0.89160 0.90609 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 9.65 71.24 0.69 0.21 16 2 C -0.11 -1.33 5.91 -19.69 -0.12 -1.44 16 3 C 0.09 1.44 10.86 84.83 0.92 2.36 16 4 N -0.48 -10.82 9.54 -184.91 -1.76 -12.58 16 5 C 0.05 1.25 6.75 41.89 0.28 1.53 16 6 C 0.57 17.00 7.81 86.88 0.68 17.68 16 7 O -0.57 -20.09 16.32 -3.77 -0.06 -20.15 16 8 N -0.69 -19.63 5.14 -465.66 -2.40 -22.03 16 9 C 0.14 4.26 4.82 86.38 0.42 4.67 16 10 C 0.10 3.20 0.76 -10.69 -0.01 3.19 16 11 C -0.16 -4.99 7.92 71.99 0.57 -4.42 16 12 C 0.13 4.90 5.41 86.34 0.47 5.37 16 13 N -0.62 -28.70 2.35 -697.34 -1.64 -30.35 16 14 C -0.24 -13.58 10.10 84.03 0.85 -12.73 16 15 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 16 C -0.03 -1.91 5.26 84.86 0.45 -1.46 16 17 N -0.95 -59.25 13.97 21.65 0.30 -58.95 16 18 Si 0.94 46.46 24.28 68.60 1.67 48.13 16 19 H -0.27 -12.28 6.58 99.48 0.65 -11.63 16 20 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 21 H -0.27 -12.98 6.54 99.48 0.65 -12.33 16 22 C 0.08 3.44 4.38 86.35 0.38 3.82 16 23 C 0.05 1.82 6.60 72.08 0.48 2.29 16 24 O -0.38 -12.76 9.97 -148.98 -1.49 -14.24 16 25 C -0.12 -2.47 9.34 22.61 0.21 -2.26 16 26 C -0.06 -0.81 5.91 -19.69 -0.12 -0.92 16 27 C -0.12 -0.84 9.67 71.23 0.69 -0.16 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.16 6.06 -2.39 -0.01 0.15 16 30 H 0.09 0.18 8.09 -2.39 -0.02 0.16 16 31 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.42 11.31 6.54 -92.71 -0.61 10.71 16 33 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 35 H 0.07 1.91 6.88 -2.39 -0.02 1.90 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.04 6.11 -2.39 -0.01 2.03 16 38 H 0.07 2.85 7.96 -2.39 -0.02 2.83 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.03 1.42 6.86 -2.39 -0.02 1.41 16 42 H 0.07 2.95 4.60 -2.39 -0.01 2.94 16 43 H 0.06 1.98 6.25 -2.39 -0.01 1.97 16 44 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.14 2.99 7.64 -2.91 -0.02 2.97 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.07 0.55 8.10 -2.39 -0.02 0.53 16 48 H 0.10 0.30 6.07 -2.38 -0.01 0.29 16 Total: -1.00 -73.14 375.56 1.72 -71.42 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.27 Total: 21.03 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.83 Total: 17.72 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.50 Total: -123.90 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.55 Total: -34.40 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -73.14 1.72 -71.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108089502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.229 kcal (2) G-P(sol) polarization free energy of solvation -73.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds