Wall clock time and date at job start Tue Mar 31 2020 17:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38606 * 120.32518 * 2 1 4 4 N 1.31490 * 120.90289 * 180.28670 * 3 2 1 5 5 C 1.32749 * 121.64263 * 359.71979 * 4 3 2 6 6 C 1.48168 * 119.72387 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99889 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99810 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99805 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47017 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.51411 * 304.99717 * 10 9 8 12 12 C 1.53301 * 109.51368 * 184.89540 * 10 9 8 13 13 N 1.47149 * 108.38587 * 187.77600 * 12 10 9 14 14 C 1.36935 * 120.97901 * 230.51290 * 13 12 10 15 15 H 1.08007 * 120.00028 * 153.74493 * 14 13 12 16 16 C 1.38807 * 120.00219 * 333.74210 * 14 13 12 17 17 N 1.31617 * 120.00067 * 160.04490 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 340.04192 * 16 14 13 19 19 H 1.48503 * 109.46993 * 91.88769 * 18 16 14 20 20 H 1.48503 * 109.47174 * 211.88735 * 18 16 14 21 21 H 1.48498 * 109.47125 * 331.88749 * 18 16 14 22 22 C 1.47155 * 118.03817 * 50.53105 * 13 12 10 23 23 C 1.53296 * 108.38573 * 309.46810 * 22 13 12 24 24 O 1.42961 * 109.26315 * 52.27681 * 23 22 13 25 25 C 1.39270 * 120.55211 * 359.97438 * 5 4 3 26 26 C 1.38576 * 120.32489 * 179.72774 * 2 1 3 27 27 C 1.50703 * 120.75618 * 359.97438 * 26 2 1 28 28 H 1.08991 * 109.47327 * 270.27351 * 1 2 3 29 29 H 1.09004 * 109.46961 * 30.27241 * 1 2 3 30 30 H 1.09000 * 109.46840 * 150.26954 * 1 2 3 31 31 H 1.08000 * 119.54677 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00204 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47009 * 299.99728 * 9 8 6 34 34 H 1.08996 * 109.47525 * 59.99784 * 9 8 6 35 35 H 1.09001 * 109.47057 * 60.00198 * 11 10 9 36 36 H 1.09005 * 109.46835 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46875 * 299.99960 * 11 10 9 38 38 H 1.09004 * 109.67669 * 307.49874 * 12 10 9 39 39 H 1.08995 * 109.68003 * 68.01027 * 12 10 9 40 40 H 0.97003 * 119.99898 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.67579 * 69.19226 * 22 13 12 42 42 H 1.08993 * 109.68165 * 189.74032 * 22 13 12 43 43 H 1.08996 * 109.51134 * 172.22494 * 23 22 13 44 44 H 1.09001 * 109.50934 * 292.32373 * 23 22 13 45 45 H 1.07996 * 120.46664 * 180.02562 * 25 5 4 46 46 H 1.09000 * 109.47311 * 269.71883 * 27 26 2 47 47 H 1.09001 * 109.46699 * 149.72164 * 27 26 2 48 48 H 1.08996 * 109.46807 * 29.72340 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2097 -0.0056 5 6 4.2295 0.0866 -0.0060 6 6 5.7097 0.1512 -0.0131 7 8 6.3625 -0.8737 -0.0139 8 7 6.3321 1.3466 -0.0185 9 6 7.7957 1.4104 -0.0261 10 6 8.2423 2.8737 -0.0318 11 6 7.5945 3.6012 -1.2117 12 6 9.7681 2.9429 -0.1630 13 7 10.1869 4.3414 0.0219 14 6 11.0169 4.9536 -0.8790 15 1 10.9886 6.0268 -0.9966 16 6 11.8946 4.1948 -1.6410 17 7 12.3977 4.6890 -2.7523 18 14 12.3620 2.4725 -1.0890 19 1 11.4340 1.4878 -1.7010 20 1 13.7523 2.1754 -1.5180 21 1 12.2711 2.3852 0.3906 22 6 9.6879 5.0624 1.2036 23 6 8.1660 4.8900 1.2682 24 8 7.8452 3.4990 1.1910 25 6 3.5923 -1.1518 0.0002 26 6 2.2067 -1.1961 0.0057 27 6 1.4779 -2.5152 0.0125 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6648 2.1305 -0.0004 32 1 5.8109 2.1648 -0.0182 33 1 8.1856 0.9147 0.8629 34 1 8.1766 0.9112 -0.9170 35 1 6.5097 3.5532 -1.1168 36 1 7.9128 4.6437 -1.2148 37 1 7.8991 3.1250 -2.1437 38 1 10.2309 2.3171 0.6002 39 1 10.0676 2.5971 -1.1523 40 1 13.0108 4.1586 -3.2850 41 1 10.1427 4.6501 2.1043 42 1 9.9342 6.1208 1.1190 43 1 7.7930 5.2981 2.2075 44 1 7.7042 5.4171 0.4333 45 1 4.1695 -2.0645 0.0003 46 1 1.3070 -2.8306 1.0418 47 1 2.0789 -3.2649 -0.5021 48 1 0.5209 -2.4042 -0.4972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108089503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:50 Heat of formation + Delta-G solvation = -18.120559 kcal Electronic energy + Delta-G solvation = -29131.206517 eV Core-core repulsion = 25187.111590 eV Total energy + Delta-G solvation = -3944.094927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95304 -39.67425 -38.73001 -35.20056 -34.91906 -34.49527 -32.74544 -31.86431 -31.57284 -28.91457 -28.40881 -27.78206 -26.51859 -25.60085 -23.59941 -23.10947 -22.96571 -21.08543 -20.25741 -19.11277 -17.97701 -17.35359 -16.93823 -16.13406 -15.70267 -15.51308 -15.40015 -15.24757 -15.01045 -14.62904 -14.53703 -14.11607 -13.93274 -13.78972 -13.48485 -13.35289 -13.29987 -13.11756 -13.02759 -12.59613 -12.34923 -12.33817 -12.25198 -11.92337 -11.83130 -11.50529 -11.37274 -11.04816 -10.83031 -10.39779 -10.34714 -10.17555 -9.81005 -9.79487 -9.64663 -9.50570 -9.37268 -9.28919 -8.89814 -8.57037 -7.02184 -5.99925 -3.36946 0.40153 0.89941 2.64034 3.10633 3.29323 3.47217 3.49565 3.65397 3.95485 4.08189 4.26684 4.41662 4.47099 4.48113 4.51173 4.76322 4.96337 4.99941 5.05831 5.14852 5.19632 5.23179 5.27023 5.33544 5.35580 5.44205 5.51196 5.54431 5.68988 5.76237 5.80234 5.84822 5.92039 5.95627 6.02612 6.09235 6.26176 6.30951 6.31890 6.46824 6.48057 6.54162 6.63961 6.78707 7.38575 7.66573 7.69660 7.83875 8.21996 8.25789 8.83626 9.64596 10.01045 11.15595 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002716 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.138258 B =10308.689021 C =10963.371277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C 0.102 3.898 4 N -0.457 5.457 5 C 0.080 3.920 6 C 0.566 3.434 7 O -0.539 6.539 8 N -0.695 5.695 9 C 0.132 3.868 10 C 0.090 3.910 11 C -0.165 4.165 12 C 0.108 3.892 13 N -0.603 5.603 14 C -0.260 4.260 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.269 1.269 22 C 0.113 3.887 23 C 0.044 3.956 24 O -0.379 6.379 25 C -0.109 4.109 26 C -0.053 4.053 27 C -0.118 4.118 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.148 0.852 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.267 -9.291 6.186 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.058 4.058 4 N -0.168 5.168 5 C -0.057 4.057 6 C 0.350 3.650 7 O -0.417 6.417 8 N -0.346 5.346 9 C 0.008 3.992 10 C 0.048 3.952 11 C -0.223 4.223 12 C -0.018 4.018 13 N -0.328 5.328 14 C -0.388 4.388 15 H 0.106 0.894 16 C -0.174 4.174 17 N -0.549 5.549 18 Si 0.708 3.292 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.194 1.194 22 C -0.013 4.013 23 C -0.034 4.034 24 O -0.298 6.298 25 C -0.130 4.130 26 C -0.061 4.061 27 C -0.175 4.175 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.166 0.834 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.218 -9.295 6.179 26.666 hybrid contribution -0.075 -1.129 0.041 1.132 sum -24.293 -10.424 6.219 27.157 Atomic orbital electron populations 1.20823 0.89935 1.03491 1.02899 1.21022 0.97769 0.93651 1.00007 1.22696 0.89291 0.97642 0.96164 1.67562 1.08669 1.30277 1.10322 1.21147 0.94260 0.89606 1.00708 1.17873 0.85783 0.84051 0.77256 1.90780 1.65894 1.34216 1.50777 1.45833 1.07766 1.08640 1.72390 1.21456 0.79138 0.95418 1.03139 1.22231 0.96655 0.90867 0.85430 1.22235 0.99061 1.03128 0.97870 1.21917 0.90852 0.87968 1.01084 1.44300 1.55268 1.08997 1.24226 1.18883 1.13058 0.93600 1.13249 0.89401 1.25241 0.97478 0.97843 0.96843 1.69816 1.33955 1.38171 1.12925 0.87056 0.77037 0.85508 0.79606 1.21346 1.22934 1.19433 1.21636 0.92237 0.97492 0.89950 1.23081 0.97072 0.82234 1.01014 1.87860 1.81486 1.23292 1.37175 1.22010 0.94133 0.99154 0.97703 1.20196 0.93237 0.95870 0.96817 1.20885 1.00433 0.93017 1.03142 0.90499 0.90862 0.90796 0.82085 0.74813 0.90462 0.89775 0.93156 0.90227 0.91621 0.94598 0.89908 0.92652 0.95133 0.91014 0.89655 0.92809 0.83448 0.90267 0.90740 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 9.65 36.01 0.35 -0.16 16 2 C -0.12 -0.96 5.91 -104.36 -0.62 -1.57 16 3 C 0.10 0.95 10.86 -17.56 -0.19 0.75 16 4 N -0.46 -5.63 9.54 -9.80 -0.09 -5.72 16 5 C 0.08 1.08 6.75 -83.01 -0.56 0.52 16 6 C 0.57 9.01 7.81 -12.18 -0.10 8.92 16 7 O -0.54 -9.90 16.32 5.36 0.09 -9.81 16 8 N -0.69 -10.82 5.18 -61.15 -0.32 -11.14 16 9 C 0.13 2.26 4.85 -4.04 -0.02 2.24 16 10 C 0.09 1.64 0.78 -90.47 -0.07 1.57 16 11 C -0.17 -2.87 7.87 37.16 0.29 -2.58 16 12 C 0.11 2.38 3.05 -3.53 -0.01 2.37 16 13 N -0.60 -14.13 2.36 -171.82 -0.40 -14.53 16 14 C -0.26 -7.10 10.10 -15.06 -0.15 -7.25 16 15 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 16 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 17 N -0.91 -27.43 13.97 55.49 0.78 -26.65 16 18 Si 0.88 22.37 24.28 -169.99 -4.13 18.25 16 19 H -0.29 -7.00 6.58 56.52 0.37 -6.63 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.27 -6.81 6.54 56.52 0.37 -6.45 16 22 C 0.11 2.19 6.74 -3.53 -0.02 2.17 16 23 C 0.04 0.72 6.60 37.31 0.25 0.97 16 24 O -0.38 -6.80 10.18 -35.23 -0.36 -7.16 16 25 C -0.11 -1.23 9.34 -39.05 -0.36 -1.59 16 26 C -0.05 -0.46 5.91 -104.35 -0.62 -1.08 16 27 C -0.12 -0.64 9.68 36.01 0.35 -0.29 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 30 H 0.07 0.26 6.06 -51.93 -0.31 -0.06 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.41 6.10 6.32 -40.82 -0.26 5.84 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.05 0.75 6.58 -51.93 -0.34 0.41 16 36 H 0.08 1.51 6.12 -51.93 -0.32 1.19 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.81 6.86 -51.93 -0.36 0.46 16 39 H 0.08 1.96 4.60 -51.93 -0.24 1.72 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.34 7.96 -51.93 -0.41 0.92 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.88 6.26 -51.93 -0.32 0.56 16 45 H 0.15 1.61 7.64 -52.49 -0.40 1.21 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 48 H 0.08 0.30 6.06 -51.93 -0.31 -0.02 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -33.07 375.27 -7.49 -40.55 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.12 Total: 4.95 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.58 Total: 5.61 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.04 Total: -58.04 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.27 Total: -16.97 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.07 -7.49 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108089503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.432 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds