Wall clock time and date at job start Tue Mar 31 2020 17:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38606 * 120.32518 * 2 1 4 4 N 1.31490 * 120.90289 * 180.28670 * 3 2 1 5 5 C 1.32749 * 121.64263 * 359.71979 * 4 3 2 6 6 C 1.48168 * 119.72387 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99889 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99810 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99805 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47017 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.51411 * 304.99717 * 10 9 8 12 12 C 1.53301 * 109.51368 * 184.89540 * 10 9 8 13 13 N 1.47149 * 108.38587 * 187.77600 * 12 10 9 14 14 C 1.36935 * 120.97901 * 230.51290 * 13 12 10 15 15 H 1.08007 * 120.00028 * 153.74493 * 14 13 12 16 16 C 1.38807 * 120.00219 * 333.74210 * 14 13 12 17 17 N 1.31617 * 120.00067 * 160.04490 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 340.04192 * 16 14 13 19 19 H 1.48503 * 109.46993 * 91.88769 * 18 16 14 20 20 H 1.48503 * 109.47174 * 211.88735 * 18 16 14 21 21 H 1.48498 * 109.47125 * 331.88749 * 18 16 14 22 22 C 1.47155 * 118.03817 * 50.53105 * 13 12 10 23 23 C 1.53296 * 108.38573 * 309.46810 * 22 13 12 24 24 O 1.42961 * 109.26315 * 52.27681 * 23 22 13 25 25 C 1.39270 * 120.55211 * 359.97438 * 5 4 3 26 26 C 1.38576 * 120.32489 * 179.72774 * 2 1 3 27 27 C 1.50703 * 120.75618 * 359.97438 * 26 2 1 28 28 H 1.08991 * 109.47327 * 270.27351 * 1 2 3 29 29 H 1.09004 * 109.46961 * 30.27241 * 1 2 3 30 30 H 1.09000 * 109.46840 * 150.26954 * 1 2 3 31 31 H 1.08000 * 119.54677 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00204 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47009 * 299.99728 * 9 8 6 34 34 H 1.08996 * 109.47525 * 59.99784 * 9 8 6 35 35 H 1.09001 * 109.47057 * 60.00198 * 11 10 9 36 36 H 1.09005 * 109.46835 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46875 * 299.99960 * 11 10 9 38 38 H 1.09004 * 109.67669 * 307.49874 * 12 10 9 39 39 H 1.08995 * 109.68003 * 68.01027 * 12 10 9 40 40 H 0.97003 * 119.99898 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.67579 * 69.19226 * 22 13 12 42 42 H 1.08993 * 109.68165 * 189.74032 * 22 13 12 43 43 H 1.08996 * 109.51134 * 172.22494 * 23 22 13 44 44 H 1.09001 * 109.50934 * 292.32373 * 23 22 13 45 45 H 1.07996 * 120.46664 * 180.02562 * 25 5 4 46 46 H 1.09000 * 109.47311 * 269.71883 * 27 26 2 47 47 H 1.09001 * 109.46699 * 149.72164 * 27 26 2 48 48 H 1.08996 * 109.46807 * 29.72340 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2097 -0.0056 5 6 4.2295 0.0866 -0.0060 6 6 5.7097 0.1512 -0.0131 7 8 6.3625 -0.8737 -0.0139 8 7 6.3321 1.3466 -0.0185 9 6 7.7957 1.4104 -0.0261 10 6 8.2423 2.8737 -0.0318 11 6 7.5945 3.6012 -1.2117 12 6 9.7681 2.9429 -0.1630 13 7 10.1869 4.3414 0.0219 14 6 11.0169 4.9536 -0.8790 15 1 10.9886 6.0268 -0.9966 16 6 11.8946 4.1948 -1.6410 17 7 12.3977 4.6890 -2.7523 18 14 12.3620 2.4725 -1.0890 19 1 11.4340 1.4878 -1.7010 20 1 13.7523 2.1754 -1.5180 21 1 12.2711 2.3852 0.3906 22 6 9.6879 5.0624 1.2036 23 6 8.1660 4.8900 1.2682 24 8 7.8452 3.4990 1.1910 25 6 3.5923 -1.1518 0.0002 26 6 2.2067 -1.1961 0.0057 27 6 1.4779 -2.5152 0.0125 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6648 2.1305 -0.0004 32 1 5.8109 2.1648 -0.0182 33 1 8.1856 0.9147 0.8629 34 1 8.1766 0.9112 -0.9170 35 1 6.5097 3.5532 -1.1168 36 1 7.9128 4.6437 -1.2148 37 1 7.8991 3.1250 -2.1437 38 1 10.2309 2.3171 0.6002 39 1 10.0676 2.5971 -1.1523 40 1 13.0108 4.1586 -3.2850 41 1 10.1427 4.6501 2.1043 42 1 9.9342 6.1208 1.1190 43 1 7.7930 5.2981 2.2075 44 1 7.7042 5.4171 0.4333 45 1 4.1695 -2.0645 0.0003 46 1 1.3070 -2.8306 1.0418 47 1 2.0789 -3.2649 -0.5021 48 1 0.5209 -2.4042 -0.4972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108089503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:49 Heat of formation + Delta-G solvation = -41.553058 kcal Electronic energy + Delta-G solvation = -29132.222626 eV Core-core repulsion = 25187.111590 eV Total energy + Delta-G solvation = -3945.111037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84917 -41.03327 -39.98760 -36.74861 -36.12375 -35.60051 -33.65587 -33.48245 -33.20482 -30.02919 -29.53570 -28.58263 -28.04872 -26.98666 -25.33043 -23.97898 -23.78555 -22.66803 -21.35258 -20.67410 -19.13238 -18.94707 -18.04022 -17.69448 -17.15442 -16.71466 -16.45314 -16.30550 -16.17127 -16.01705 -15.74612 -15.51379 -15.39395 -15.20657 -14.69019 -14.37685 -14.14921 -13.95506 -13.89671 -13.72566 -13.67123 -13.59948 -13.40141 -13.10975 -13.06318 -12.73574 -12.70659 -12.46644 -12.40419 -12.24533 -12.02883 -11.65028 -11.51403 -11.25016 -11.07368 -10.57600 -10.51541 -10.49939 -10.30856 -9.89232 -8.96679 -8.21023 -5.53309 -0.42217 0.19087 1.24266 1.36796 1.43634 1.60916 1.93165 2.35403 2.63387 2.78598 2.95393 3.10197 3.21267 3.64774 3.72905 3.74134 3.81678 3.86667 3.86981 3.90042 4.23482 4.26392 4.38767 4.41707 4.48671 4.49777 4.55383 4.60116 4.63973 4.68724 4.70006 4.76199 4.79082 4.86033 4.89664 4.99896 5.01772 5.10573 5.12999 5.21414 5.22402 5.31053 5.37870 5.68706 5.77215 6.07572 6.21429 6.31264 6.75886 6.79924 7.03657 7.52793 7.94354 8.98182 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002716 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.138258 B =10308.689021 C =10963.371277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.109 4.109 3 C 0.093 3.907 4 N -0.477 5.477 5 C 0.050 3.950 6 C 0.564 3.436 7 O -0.573 6.573 8 N -0.690 5.690 9 C 0.138 3.862 10 C 0.102 3.898 11 C -0.158 4.158 12 C 0.104 3.896 13 N -0.616 5.616 14 C -0.241 4.241 15 H 0.064 0.936 16 C -0.027 4.027 17 N -0.951 5.951 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.309 1.309 21 H -0.266 1.266 22 C 0.105 3.895 23 C 0.049 3.951 24 O -0.379 6.379 25 C -0.118 4.118 26 C -0.056 4.056 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.191 0.809 32 H 0.419 0.581 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.058 0.942 45 H 0.141 0.859 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.234 -10.001 7.528 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.067 4.067 4 N -0.188 5.188 5 C -0.086 4.086 6 C 0.350 3.650 7 O -0.453 6.453 8 N -0.341 5.341 9 C 0.013 3.987 10 C 0.061 3.939 11 C -0.215 4.215 12 C -0.022 4.022 13 N -0.341 5.341 14 C -0.371 4.371 15 H 0.081 0.919 16 C -0.223 4.223 17 N -0.597 5.597 18 Si 0.760 3.240 19 H -0.201 1.201 20 H -0.238 1.238 21 H -0.191 1.191 22 C -0.019 4.019 23 C -0.028 4.028 24 O -0.298 6.298 25 C -0.140 4.140 26 C -0.064 4.064 27 C -0.173 4.173 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.207 0.793 32 H 0.258 0.742 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.076 0.924 45 H 0.159 0.841 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -28.227 -10.006 7.560 30.887 hybrid contribution 0.992 -0.825 -0.315 1.328 sum -27.235 -10.830 7.245 30.192 Atomic orbital electron populations 1.20949 0.86961 1.04965 1.04153 1.21459 0.99750 0.92701 0.97163 1.23283 0.88440 0.99559 0.95439 1.67482 1.10214 1.29941 1.11190 1.20793 0.92737 0.90923 1.04164 1.18328 0.87134 0.83381 0.76124 1.90744 1.67032 1.35157 1.52369 1.45707 1.06898 1.09006 1.72479 1.21257 0.80337 0.94358 1.02702 1.21956 0.93986 0.91812 0.86163 1.22152 1.00599 1.01716 0.97064 1.21909 0.93599 0.86960 0.99767 1.44404 1.54973 1.09650 1.25057 1.18837 1.12620 0.92704 1.12912 0.91875 1.25754 0.98267 1.01141 0.97119 1.69923 1.35611 1.39782 1.14355 0.86188 0.76304 0.82307 0.79208 1.20094 1.23761 1.19100 1.21874 0.94353 0.97365 0.88315 1.23166 0.94703 0.81646 1.03282 1.87881 1.81091 1.24082 1.36724 1.22095 0.95585 0.98182 0.98106 1.20576 0.92212 0.97833 0.95789 1.20979 1.00959 0.91199 1.04187 0.89073 0.89416 0.89386 0.79261 0.74229 0.91034 0.90274 0.90558 0.91781 0.92432 0.95009 0.91866 0.92886 0.94698 0.90523 0.85797 0.92388 0.84112 0.89093 0.90716 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.65 71.24 0.69 0.20 16 2 C -0.11 -1.35 5.91 -19.69 -0.12 -1.47 16 3 C 0.09 1.48 10.86 84.83 0.92 2.40 16 4 N -0.48 -11.11 9.54 -184.91 -1.76 -12.87 16 5 C 0.05 1.33 6.75 41.89 0.28 1.61 16 6 C 0.56 18.15 7.81 86.88 0.68 18.83 16 7 O -0.57 -21.61 16.32 -3.75 -0.06 -21.67 16 8 N -0.69 -21.20 5.18 -465.67 -2.41 -23.62 16 9 C 0.14 4.69 4.85 86.38 0.42 5.10 16 10 C 0.10 3.65 0.78 -10.69 -0.01 3.65 16 11 C -0.16 -5.35 7.87 71.98 0.57 -4.78 16 12 C 0.10 4.53 3.05 86.36 0.26 4.80 16 13 N -0.62 -28.71 2.36 -697.53 -1.64 -30.36 16 14 C -0.24 -13.42 10.10 84.03 0.85 -12.57 16 15 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 16 C -0.03 -1.60 5.26 84.86 0.45 -1.16 16 17 N -0.95 -59.30 13.97 21.65 0.30 -58.99 16 18 Si 0.93 47.21 24.28 68.60 1.67 48.88 16 19 H -0.27 -13.24 6.58 99.48 0.65 -12.58 16 20 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 21 H -0.27 -13.20 6.54 99.48 0.65 -12.55 16 22 C 0.11 3.96 6.74 86.35 0.58 4.54 16 23 C 0.05 1.50 6.60 72.08 0.48 1.98 16 24 O -0.38 -12.81 10.18 -148.98 -1.52 -14.33 16 25 C -0.12 -2.62 9.34 22.61 0.21 -2.40 16 26 C -0.06 -0.84 5.91 -19.69 -0.12 -0.96 16 27 C -0.12 -0.92 9.68 71.24 0.69 -0.23 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.19 8.10 -2.38 -0.02 0.17 16 30 H 0.09 0.18 6.06 -2.39 -0.01 0.17 16 31 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.42 11.89 6.32 -92.71 -0.59 11.30 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.08 2.16 6.58 -2.39 -0.02 2.15 16 36 H 0.06 2.38 6.12 -2.38 -0.01 2.36 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.03 1.42 6.86 -2.38 -0.02 1.41 16 39 H 0.06 3.01 4.60 -2.39 -0.01 3.00 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 43 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.06 1.76 6.26 -2.39 -0.01 1.75 16 45 H 0.14 3.16 7.64 -2.91 -0.02 3.14 16 46 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 48 H 0.10 0.36 6.06 -2.39 -0.01 0.34 16 Total: -1.00 -73.87 375.27 1.69 -72.18 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.29 Total: 21.25 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.83 Total: 19.53 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.52 Total: -125.84 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.58 Total: -36.00 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -73.87 1.69 -72.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108089503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.627 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds