Wall clock time and date at job start Tue Mar 31 2020 17:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37995 * 120.81982 * 2 1 4 4 C 1.39131 * 119.26232 * 180.27299 * 3 2 1 5 5 O 1.35490 * 119.52810 * 179.69867 * 4 3 2 6 6 N 1.32435 * 120.94720 * 359.71701 * 4 3 2 7 7 C 1.31643 * 121.80238 * 0.02562 * 6 4 3 8 8 C 1.39556 * 120.62422 * 0.02562 * 7 6 4 9 9 C 1.47620 * 120.50094 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00222 * 234.79371 * 9 8 7 11 11 N 1.34777 * 119.99891 * 54.79316 * 9 8 7 12 12 C 1.46929 * 120.62968 * 356.02371 * 11 9 8 13 13 C 1.53190 * 108.77400 * 126.37119 * 12 11 9 14 14 C 1.53040 * 109.31746 * 54.63411 * 13 12 11 15 15 H 1.08997 * 109.46173 * 178.61596 * 14 13 12 16 16 C 1.53004 * 109.45979 * 58.65122 * 14 13 12 17 17 C 1.53045 * 109.53752 * 298.63650 * 14 13 12 18 18 H 1.09008 * 109.49416 * 301.41255 * 17 14 13 19 19 C 1.52996 * 109.52549 * 181.33094 * 17 14 13 20 20 N 1.46500 * 109.47112 * 175.08033 * 19 17 14 21 21 C 1.36936 * 120.00040 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99815 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99861 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99831 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00338 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46931 * 90.00511 * 25 23 21 27 27 H 1.48505 * 109.47466 * 210.00275 * 25 23 21 28 28 H 1.48500 * 109.47088 * 330.00646 * 25 23 21 29 29 C 1.46925 * 120.62935 * 175.99991 * 11 9 8 30 30 H 1.08993 * 109.47112 * 274.70173 * 1 2 3 31 31 H 1.09002 * 109.46873 * 34.69596 * 1 2 3 32 32 H 1.09004 * 109.47214 * 154.69593 * 1 2 3 33 33 H 1.07998 * 120.36769 * 0.02562 * 3 2 1 34 34 H 0.96696 * 114.00113 * 270.02281 * 5 4 3 35 35 H 1.07998 * 119.68850 * 179.97438 * 7 6 4 36 36 H 1.08995 * 109.58429 * 246.15284 * 12 11 9 37 37 H 1.08999 * 109.58725 * 6.43760 * 12 11 9 38 38 H 1.08997 * 109.49797 * 174.58810 * 13 12 11 39 39 H 1.09005 * 109.49941 * 294.65100 * 13 12 11 40 40 H 1.08996 * 109.47048 * 299.93729 * 16 14 13 41 41 H 1.09001 * 109.46635 * 59.93950 * 16 14 13 42 42 H 1.08994 * 109.46969 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.46915 * 295.07749 * 19 17 14 44 44 H 1.08996 * 109.47238 * 55.08122 * 19 17 14 45 45 H 0.96998 * 119.99852 * 359.97438 * 20 19 17 46 46 H 0.97000 * 120.00036 * 179.97438 * 24 23 21 47 47 H 1.09006 * 109.58255 * 113.84628 * 29 11 9 48 48 H 1.08993 * 109.58869 * 353.41674 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3044 2.3076 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6204 -1.1601 -0.0006 8 6 2.2256 -1.2044 0.0043 9 6 1.5171 -2.4994 0.0106 10 8 0.6898 -2.7439 -0.8462 11 7 1.7872 -3.4108 0.9660 12 6 2.8450 -3.1662 1.9561 13 6 2.2551 -3.3355 3.3597 14 6 1.5975 -4.7131 3.4697 15 1 1.1985 -4.8457 4.4753 16 6 2.6380 -5.7987 3.1871 17 6 0.4598 -4.8199 2.4516 18 1 -0.2695 -4.0313 2.6370 19 6 -0.2187 -6.1847 2.5844 20 7 -1.3796 -6.2417 1.6926 21 6 -2.1475 -7.3743 1.6398 22 1 -1.8971 -8.2256 2.2553 23 6 -3.2471 -7.4285 0.7943 24 7 -3.9855 -8.5169 0.7440 25 14 -3.6798 -5.9563 -0.2709 26 1 -2.9824 -6.0685 -1.5772 27 1 -5.1474 -5.9214 -0.4947 28 1 -3.2534 -4.7086 0.4123 29 6 1.0293 -4.6674 1.0376 30 1 -0.3633 0.0842 1.0241 31 1 -0.3633 0.8450 -0.5850 32 1 -0.3634 -0.9291 -0.4393 33 1 1.6936 2.1314 0.0004 34 1 4.5034 2.6421 -0.8972 35 1 4.1848 -2.0809 -0.0011 36 1 3.6539 -3.8822 1.8109 37 1 3.2285 -2.1528 1.8384 38 1 3.0499 -3.2516 4.1009 39 1 1.5092 -2.5607 3.5368 40 1 3.0368 -5.6666 2.1813 41 1 3.4483 -5.7228 3.9122 42 1 2.1699 -6.7798 3.2658 43 1 0.4872 -6.9694 2.3125 44 1 -0.5444 -6.3298 3.6144 45 1 -1.6042 -5.4772 1.1394 46 1 -4.7541 -8.5547 0.1535 47 1 1.6903 -5.5058 0.8176 48 1 0.2132 -4.6435 0.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133117100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:11 Heat of formation + Delta-G solvation = -24.853944 kcal Electronic energy + Delta-G solvation = -29692.314178 eV Core-core repulsion = 25747.927269 eV Total energy + Delta-G solvation = -3944.386909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40227 -40.11973 -38.39255 -37.33405 -35.22587 -34.27122 -33.68239 -32.03119 -31.11398 -30.13404 -28.43205 -27.75872 -26.00261 -25.24322 -23.95745 -23.04580 -22.58570 -21.17668 -20.38050 -18.86196 -18.54966 -17.94282 -17.41660 -17.17254 -16.36419 -16.19716 -15.33474 -15.19106 -14.98295 -14.90349 -14.53452 -14.12705 -14.01868 -13.72608 -13.50391 -13.34142 -13.23934 -13.05389 -12.84062 -12.72552 -12.55374 -12.39411 -12.10922 -12.02572 -11.79406 -11.57405 -11.24360 -11.12250 -10.85880 -10.73730 -10.42887 -10.30970 -10.17700 -10.03330 -9.95326 -9.73751 -9.55414 -9.25534 -8.87286 -8.65389 -7.20984 -5.74685 -3.10294 0.28443 0.72348 2.41705 2.78148 2.98571 3.35074 3.42967 3.47517 3.51170 4.08070 4.16764 4.26181 4.55742 4.57865 4.62969 4.70371 4.76007 4.80525 5.00184 5.04835 5.10978 5.20346 5.23251 5.31222 5.35866 5.38889 5.48949 5.55797 5.58206 5.60846 5.67683 5.73054 5.77115 5.85780 5.91954 5.94956 6.02588 6.16474 6.19611 6.23819 6.36674 6.43472 6.64354 6.75404 6.98979 7.23434 7.39141 7.98014 8.00883 8.44269 9.23224 9.96028 10.15068 11.43610 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003459 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.516936 B = 8091.888365 C = 9493.959621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.024 3.976 3 C -0.191 4.191 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.160 3.840 8 C -0.188 4.188 9 C 0.564 3.436 10 O -0.523 6.523 11 N -0.600 5.600 12 C 0.098 3.902 13 C -0.128 4.128 14 C -0.084 4.084 15 H 0.076 0.924 16 C -0.154 4.154 17 C -0.106 4.106 18 H 0.073 0.927 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.118 3.882 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.076 0.924 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.701 20.312 1.923 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 C -0.212 4.212 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.001 3.999 8 C -0.194 4.194 9 C 0.351 3.649 10 O -0.400 6.400 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.166 4.166 14 C -0.103 4.103 15 H 0.095 0.905 16 C -0.211 4.211 17 C -0.126 4.126 18 H 0.092 0.908 19 C 0.037 3.963 20 N -0.403 5.403 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.003 4.003 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.262 0.738 35 H 0.184 0.816 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.044 19.974 2.100 27.678 hybrid contribution -1.148 1.160 -1.183 2.016 sum 17.896 21.135 0.917 27.709 Atomic orbital electron populations 1.21135 0.89066 1.05676 1.03573 1.20245 0.97379 0.90599 0.90140 1.21950 0.93740 0.99506 1.06042 1.19312 0.87051 0.85204 0.93460 1.84711 1.75964 1.34108 1.34111 1.67188 1.41862 0.98172 1.15428 1.22695 0.89931 0.95340 0.91905 1.20891 0.95462 0.94603 1.08406 1.17968 0.82309 0.82959 0.81696 1.90833 1.34076 1.78289 1.36789 1.48120 1.36385 1.19264 1.29444 1.22005 0.90030 1.02003 0.88488 1.21934 1.00723 0.98060 0.95912 1.21066 0.95476 0.94195 0.99571 0.90514 1.22001 0.98413 0.99305 1.01417 1.21757 0.96816 1.00096 0.93942 0.90849 1.20662 0.88815 0.92532 0.94262 1.42775 1.31348 1.16358 1.49803 1.19032 1.05391 0.92534 1.20432 0.89209 1.24654 0.97760 0.96884 0.99699 1.69703 1.19568 1.27028 1.41939 0.86592 0.77551 0.83290 0.81378 1.20848 1.21750 1.20351 1.21823 0.96480 0.83730 0.98312 0.89904 0.90261 0.88525 0.83504 0.73766 0.81615 0.90444 0.90009 0.90588 0.91568 0.92439 0.92928 0.91540 0.94964 0.95225 0.80586 0.93077 0.90537 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.75 36.01 0.35 -1.04 16 2 C 0.02 0.25 5.94 -103.95 -0.62 -0.36 16 3 C -0.19 -1.67 9.74 -39.34 -0.38 -2.05 16 4 C 0.33 3.11 7.74 -16.96 -0.13 2.98 16 5 O -0.48 -3.69 13.55 -18.16 -0.25 -3.93 16 6 N -0.51 -5.40 10.37 -12.97 -0.13 -5.54 16 7 C 0.16 1.60 8.62 -17.14 -0.15 1.45 16 8 C -0.19 -2.14 4.87 -104.82 -0.51 -2.65 16 9 C 0.56 7.86 6.61 -12.43 -0.08 7.78 16 10 O -0.52 -9.37 14.64 5.29 0.08 -9.29 16 11 N -0.60 -7.47 2.97 -173.97 -0.52 -7.99 16 12 C 0.10 0.89 5.10 -3.71 -0.02 0.87 16 13 C -0.13 -1.16 5.62 -26.61 -0.15 -1.31 16 14 C -0.08 -0.92 2.71 -90.57 -0.25 -1.16 16 15 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.15 -1.55 8.11 37.16 0.30 -1.24 16 17 C -0.11 -1.55 2.15 -90.50 -0.19 -1.74 16 18 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 19 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 20 N -0.76 -17.97 5.18 -59.91 -0.31 -18.28 16 21 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 25 Si 0.88 22.91 27.73 -169.99 -4.71 18.20 16 26 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 29 C 0.12 1.75 5.04 -3.71 -0.02 1.73 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.63 8.13 -51.93 -0.42 0.20 16 32 H 0.10 1.26 5.73 -51.93 -0.30 0.97 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.40 1.05 9.06 45.56 0.41 1.46 16 35 H 0.17 1.33 7.43 -52.49 -0.39 0.94 16 36 H 0.08 0.60 6.69 -51.93 -0.35 0.26 16 37 H 0.08 0.69 4.77 -51.93 -0.25 0.44 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 43 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.36 8.60 4.76 -40.82 -0.19 8.40 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 47 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 48 H 0.10 1.78 6.23 -51.93 -0.32 1.46 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.81 371.52 -7.67 -43.48 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.08 Total: 7.45 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.12 Total: -0.76 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.19 Total: -60.75 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.17 Total: -13.22 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.81 -7.67 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133117100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.627 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds