Wall clock time and date at job start Tue Mar 31 2020 17:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37995 * 120.81982 * 2 1 4 4 C 1.39131 * 119.26232 * 180.27299 * 3 2 1 5 5 O 1.35490 * 119.52810 * 179.69867 * 4 3 2 6 6 N 1.32435 * 120.94720 * 359.71701 * 4 3 2 7 7 C 1.31643 * 121.80238 * 0.02562 * 6 4 3 8 8 C 1.39556 * 120.62422 * 0.02562 * 7 6 4 9 9 C 1.47620 * 120.50094 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00222 * 234.79371 * 9 8 7 11 11 N 1.34777 * 119.99891 * 54.79316 * 9 8 7 12 12 C 1.46929 * 120.62968 * 356.02371 * 11 9 8 13 13 C 1.53190 * 108.77400 * 126.37119 * 12 11 9 14 14 C 1.53040 * 109.31746 * 54.63411 * 13 12 11 15 15 H 1.08997 * 109.46173 * 178.61596 * 14 13 12 16 16 C 1.53004 * 109.45979 * 58.65122 * 14 13 12 17 17 C 1.53045 * 109.53752 * 298.63650 * 14 13 12 18 18 H 1.09008 * 109.49416 * 301.41255 * 17 14 13 19 19 C 1.52996 * 109.52549 * 181.33094 * 17 14 13 20 20 N 1.46500 * 109.47112 * 175.08033 * 19 17 14 21 21 C 1.36936 * 120.00040 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99815 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99861 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99831 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00338 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46931 * 90.00511 * 25 23 21 27 27 H 1.48505 * 109.47466 * 210.00275 * 25 23 21 28 28 H 1.48500 * 109.47088 * 330.00646 * 25 23 21 29 29 C 1.46925 * 120.62935 * 175.99991 * 11 9 8 30 30 H 1.08993 * 109.47112 * 274.70173 * 1 2 3 31 31 H 1.09002 * 109.46873 * 34.69596 * 1 2 3 32 32 H 1.09004 * 109.47214 * 154.69593 * 1 2 3 33 33 H 1.07998 * 120.36769 * 0.02562 * 3 2 1 34 34 H 0.96696 * 114.00113 * 270.02281 * 5 4 3 35 35 H 1.07998 * 119.68850 * 179.97438 * 7 6 4 36 36 H 1.08995 * 109.58429 * 246.15284 * 12 11 9 37 37 H 1.08999 * 109.58725 * 6.43760 * 12 11 9 38 38 H 1.08997 * 109.49797 * 174.58810 * 13 12 11 39 39 H 1.09005 * 109.49941 * 294.65100 * 13 12 11 40 40 H 1.08996 * 109.47048 * 299.93729 * 16 14 13 41 41 H 1.09001 * 109.46635 * 59.93950 * 16 14 13 42 42 H 1.08994 * 109.46969 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.46915 * 295.07749 * 19 17 14 44 44 H 1.08996 * 109.47238 * 55.08122 * 19 17 14 45 45 H 0.96998 * 119.99852 * 359.97438 * 20 19 17 46 46 H 0.97000 * 120.00036 * 179.97438 * 24 23 21 47 47 H 1.09006 * 109.58255 * 113.84628 * 29 11 9 48 48 H 1.08993 * 109.58869 * 353.41674 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3044 2.3076 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6204 -1.1601 -0.0006 8 6 2.2256 -1.2044 0.0043 9 6 1.5171 -2.4994 0.0106 10 8 0.6898 -2.7439 -0.8462 11 7 1.7872 -3.4108 0.9660 12 6 2.8450 -3.1662 1.9561 13 6 2.2551 -3.3355 3.3597 14 6 1.5975 -4.7131 3.4697 15 1 1.1985 -4.8457 4.4753 16 6 2.6380 -5.7987 3.1871 17 6 0.4598 -4.8199 2.4516 18 1 -0.2695 -4.0313 2.6370 19 6 -0.2187 -6.1847 2.5844 20 7 -1.3796 -6.2417 1.6926 21 6 -2.1475 -7.3743 1.6398 22 1 -1.8971 -8.2256 2.2553 23 6 -3.2471 -7.4285 0.7943 24 7 -3.9855 -8.5169 0.7440 25 14 -3.6798 -5.9563 -0.2709 26 1 -2.9824 -6.0685 -1.5772 27 1 -5.1474 -5.9214 -0.4947 28 1 -3.2534 -4.7086 0.4123 29 6 1.0293 -4.6674 1.0376 30 1 -0.3633 0.0842 1.0241 31 1 -0.3633 0.8450 -0.5850 32 1 -0.3634 -0.9291 -0.4393 33 1 1.6936 2.1314 0.0004 34 1 4.5034 2.6421 -0.8972 35 1 4.1848 -2.0809 -0.0011 36 1 3.6539 -3.8822 1.8109 37 1 3.2285 -2.1528 1.8384 38 1 3.0499 -3.2516 4.1009 39 1 1.5092 -2.5607 3.5368 40 1 3.0368 -5.6666 2.1813 41 1 3.4483 -5.7228 3.9122 42 1 2.1699 -6.7798 3.2658 43 1 0.4872 -6.9694 2.3125 44 1 -0.5444 -6.3298 3.6144 45 1 -1.6042 -5.4772 1.1394 46 1 -4.7541 -8.5547 0.1535 47 1 1.6903 -5.5058 0.8176 48 1 0.2132 -4.6435 0.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133117100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:10 Heat of formation + Delta-G solvation = -53.203336 kcal Electronic energy + Delta-G solvation = -29693.543500 eV Core-core repulsion = 25747.927269 eV Total energy + Delta-G solvation = -3945.616231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25185 -41.01212 -39.41600 -38.04809 -36.83092 -35.13563 -34.86681 -33.68532 -32.29208 -31.37770 -29.19634 -28.75182 -27.39849 -26.20517 -24.78492 -24.63466 -23.41513 -22.58649 -21.42761 -19.97360 -19.46033 -19.16479 -18.74550 -18.01235 -17.36467 -16.89407 -16.79147 -16.30429 -16.17351 -15.92407 -15.63919 -15.38428 -15.16529 -14.79268 -14.64584 -14.55671 -14.34291 -14.13342 -13.92232 -13.74884 -13.68136 -13.40114 -13.17797 -13.02680 -12.95851 -12.75862 -12.68339 -12.47110 -12.19445 -12.06198 -11.87707 -11.74554 -11.46092 -11.31116 -11.15963 -10.99477 -10.70283 -10.56114 -10.01603 -9.67250 -9.30997 -8.06556 -5.38339 -0.45660 0.00361 1.32428 1.36505 1.40696 1.41802 1.82572 2.30746 2.42945 2.65098 3.25645 3.25761 3.46188 3.49013 3.52732 3.73798 3.80778 3.88946 3.97714 4.04180 4.14138 4.22458 4.32182 4.33116 4.46149 4.52868 4.54592 4.58101 4.63092 4.66875 4.74825 4.77391 4.89034 4.92852 4.98368 5.07325 5.13673 5.16656 5.23018 5.28355 5.33228 5.37238 5.43887 5.59569 5.73804 6.18483 6.25137 6.50626 6.73904 6.95747 7.04539 7.82002 7.98423 9.15123 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003459 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.516936 B = 8091.888365 C = 9493.959621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 C -0.183 4.183 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.524 5.524 7 C 0.167 3.833 8 C -0.204 4.204 9 C 0.562 3.438 10 O -0.574 6.574 11 N -0.595 5.595 12 C 0.094 3.906 13 C -0.122 4.122 14 C -0.079 4.079 15 H 0.081 0.919 16 C -0.152 4.152 17 C -0.094 4.094 18 H 0.060 0.940 19 C 0.162 3.838 20 N -0.761 5.761 21 C -0.228 4.228 22 H 0.064 0.936 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.262 1.262 29 C 0.123 3.877 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.173 0.827 34 H 0.426 0.574 35 H 0.184 0.816 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.030 0.970 45 H 0.361 0.639 46 H 0.258 0.742 47 H 0.083 0.917 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.407 23.287 2.811 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.009 3.991 3 C -0.204 4.204 4 C 0.153 3.847 5 O -0.297 6.297 6 N -0.243 5.243 7 C 0.009 3.991 8 C -0.209 4.209 9 C 0.351 3.649 10 O -0.454 6.454 11 N -0.325 5.325 12 C -0.027 4.027 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.100 0.900 16 C -0.209 4.209 17 C -0.114 4.114 18 H 0.078 0.922 19 C 0.036 3.964 20 N -0.407 5.407 21 C -0.359 4.359 22 H 0.082 0.918 23 C -0.249 4.249 24 N -0.631 5.631 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.188 1.188 29 C 0.000 4.000 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.191 0.809 34 H 0.288 0.712 35 H 0.201 0.799 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.194 0.806 46 H 0.067 0.933 47 H 0.101 0.899 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.824 22.996 3.025 31.847 hybrid contribution -1.881 0.251 -1.396 2.356 sum 19.942 23.247 1.629 30.672 Atomic orbital electron populations 1.21094 0.89249 1.04751 1.04119 1.20373 0.97468 0.90991 0.90310 1.22112 0.93501 0.99804 1.04974 1.19497 0.87466 0.85424 0.92300 1.84664 1.75674 1.33256 1.36135 1.67263 1.42171 0.98617 1.16251 1.22876 0.89272 0.95962 0.91020 1.20726 0.96040 0.93443 1.10697 1.18390 0.81685 0.83789 0.81062 1.90804 1.36429 1.79315 1.38838 1.48147 1.36527 1.18053 1.29820 1.22296 0.89420 1.03474 0.87531 1.21919 1.01325 0.96179 0.96532 1.21051 0.94378 0.96073 0.98256 0.90031 1.21983 0.98672 0.97839 1.02397 1.21613 0.97709 0.96881 0.95175 0.92198 1.20864 0.87314 0.95347 0.92919 1.42861 1.32293 1.14862 1.50682 1.19067 1.05200 0.93016 1.18658 0.91818 1.25353 0.98293 0.99556 1.01720 1.69852 1.20530 1.29268 1.43500 0.85566 0.77015 0.80652 0.79447 1.21090 1.21683 1.18764 1.21559 0.95813 0.85285 0.97307 0.89151 0.88103 0.91923 0.80937 0.71166 0.79939 0.88265 0.88719 0.87420 0.92240 0.92226 0.90293 0.93245 0.94472 0.95241 0.80581 0.93294 0.89912 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.75 71.24 0.69 -1.92 16 2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16 3 C -0.18 -2.67 9.74 22.43 0.22 -2.45 16 4 C 0.33 5.30 7.74 84.82 0.66 5.96 16 5 O -0.49 -5.85 13.55 -87.91 -1.19 -7.04 16 6 N -0.52 -9.75 10.37 -307.81 -3.19 -12.94 16 7 C 0.17 2.97 8.62 85.04 0.73 3.70 16 8 C -0.20 -4.38 4.87 -19.99 -0.10 -4.47 16 9 C 0.56 15.63 6.61 86.72 0.57 16.20 16 10 O -0.57 -21.34 14.64 -3.97 -0.06 -21.40 16 11 N -0.59 -14.25 2.97 -822.57 -2.44 -16.69 16 12 C 0.09 1.44 5.10 86.36 0.44 1.88 16 13 C -0.12 -1.79 5.62 30.67 0.17 -1.61 16 14 C -0.08 -1.53 2.71 -10.76 -0.03 -1.55 16 15 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 16 C -0.15 -2.62 8.11 71.98 0.58 -2.03 16 17 C -0.09 -2.68 2.15 -10.71 -0.02 -2.70 16 18 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 19 C 0.16 5.98 5.19 86.38 0.45 6.43 16 20 N -0.76 -36.71 5.18 -343.47 -1.78 -38.49 16 21 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 22 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 23 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 24 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 25 Si 0.94 48.65 27.73 68.60 1.90 50.55 16 26 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.26 -12.68 6.52 99.48 0.65 -12.03 16 29 C 0.12 3.64 5.04 86.36 0.44 4.08 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.06 1.69 5.73 -2.39 -0.01 1.67 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.43 0.81 9.06 -74.06 -0.67 0.14 16 35 H 0.18 2.45 7.43 -2.91 -0.02 2.42 16 36 H 0.10 1.15 6.69 -2.39 -0.02 1.13 16 37 H 0.09 1.28 4.77 -2.39 -0.01 1.27 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.06 1.00 4.98 -2.39 -0.01 0.99 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.03 6.57 -2.39 -0.02 1.01 16 43 H 0.04 1.36 6.73 -2.39 -0.02 1.35 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.36 17.42 4.76 -92.71 -0.44 16.98 16 46 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 47 H 0.08 2.32 6.69 -2.38 -0.02 2.30 16 48 H 0.06 2.19 6.23 -2.39 -0.01 2.18 16 Total: -1.00 -80.62 371.52 -0.58 -81.20 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.16 Total: 22.53 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.04 Total: 6.20 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -7.11 Total: -132.03 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.25 Total: -28.45 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.90 Total: 50.55 kcal Total: -80.62 -0.58 -81.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133117100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.995 kcal (2) G-P(sol) polarization free energy of solvation -80.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds