Wall clock time and date at job start Tue Mar 31 2020 17:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37994 * 120.82349 * 2 1 4 4 C 1.39119 * 119.26859 * 179.97438 * 3 2 1 5 5 O 1.35494 * 119.52894 * 179.97438 * 4 3 2 6 6 N 1.32444 * 120.94803 * 359.97438 * 4 3 2 7 7 C 1.31638 * 121.79881 * 359.72349 * 6 4 3 8 8 C 1.39566 * 120.62432 * 0.54383 * 7 6 4 9 9 C 1.47619 * 120.49860 * 179.74658 * 8 7 6 10 10 O 1.21583 * 119.99948 * 125.99827 * 9 8 7 11 11 N 1.34769 * 119.99969 * 306.00013 * 9 8 7 12 12 C 1.46927 * 120.63443 * 354.27960 * 11 9 8 13 13 C 1.53198 * 108.77798 * 233.59071 * 12 11 9 14 14 C 1.53042 * 109.33464 * 305.37757 * 13 12 11 15 15 H 1.08996 * 109.48534 * 181.35646 * 14 13 12 16 16 C 1.53005 * 109.43180 * 301.31269 * 14 13 12 17 17 C 1.53044 * 109.54081 * 61.31338 * 14 13 12 18 18 H 1.09000 * 109.49158 * 58.65152 * 17 14 13 19 19 C 1.52994 * 109.49636 * 178.71710 * 17 14 13 20 20 N 1.46500 * 109.47135 * 184.94063 * 19 17 14 21 21 C 1.36939 * 120.00046 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99894 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99908 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99948 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46796 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.46942 * 299.99723 * 25 23 21 28 28 H 1.48494 * 109.47231 * 59.99882 * 25 23 21 29 29 C 1.46930 * 120.63084 * 174.25627 * 11 9 8 30 30 H 1.09006 * 109.46511 * 274.91370 * 1 2 3 31 31 H 1.09002 * 109.47085 * 34.91270 * 1 2 3 32 32 H 1.08998 * 109.47046 * 154.91859 * 1 2 3 33 33 H 1.08002 * 120.36627 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00183 * 89.99546 * 5 4 3 35 35 H 1.07993 * 119.68985 * 180.26702 * 7 6 4 36 36 H 1.09002 * 109.58234 * 353.37222 * 12 11 9 37 37 H 1.08997 * 109.59096 * 113.65651 * 12 11 9 38 38 H 1.08992 * 109.50009 * 65.30767 * 13 12 11 39 39 H 1.08995 * 109.49858 * 185.40864 * 13 12 11 40 40 H 1.09001 * 109.47306 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.46906 * 300.05241 * 16 14 13 42 42 H 1.08998 * 109.47203 * 60.05059 * 16 14 13 43 43 H 1.08999 * 109.47638 * 64.93508 * 19 17 14 44 44 H 1.09007 * 109.47361 * 304.93822 * 19 17 14 45 45 H 0.97001 * 119.99785 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99698 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.58793 * 6.62570 * 29 11 9 48 48 H 1.09002 * 109.70342 * 246.27093 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0067 0.0016 7 6 3.6205 -1.1601 0.0075 8 6 2.2256 -1.2044 0.0016 9 6 1.5171 -2.4995 0.0027 10 8 0.6787 -2.7331 0.8516 11 7 1.7997 -3.4229 -0.9374 12 6 2.7169 -3.1105 -2.0419 13 6 2.0163 -3.4227 -3.3680 14 6 1.5227 -4.8712 -3.3516 15 1 1.0450 -5.1033 -4.3034 16 6 2.7103 -5.8113 -3.1350 17 6 0.5132 -5.0552 -2.2161 18 1 -0.3216 -4.3686 -2.3568 19 6 -0.0036 -6.4952 -2.2206 20 7 -1.0550 -6.6399 -1.2108 21 6 -1.6700 -7.8502 -1.0311 22 1 -1.3802 -8.6979 -1.6342 23 6 -2.6658 -7.9873 -0.0739 24 7 -3.0186 -6.9543 0.6614 25 14 -3.5042 -9.6385 0.1716 26 1 -4.5239 -9.5211 1.2449 27 1 -4.1631 -10.0520 -1.0934 28 1 -2.4927 -10.6546 0.5581 29 6 1.1967 -4.7614 -0.8770 30 1 -0.3632 0.0880 1.0240 31 1 -0.3633 0.8427 -0.5882 32 1 -0.3633 -0.9307 -0.4356 33 1 1.6937 2.1314 0.0004 34 1 4.5070 2.6451 0.8832 35 1 4.1848 -2.0809 0.0125 36 1 2.9821 -2.0538 -2.0087 37 1 3.6183 -3.7165 -1.9509 38 1 1.1677 -2.7512 -3.4981 39 1 2.7179 -3.2867 -4.1910 40 1 2.3595 -6.8432 -3.1237 41 1 3.4294 -5.6804 -3.9436 42 1 3.1880 -5.5798 -2.1830 43 1 0.8162 -7.1762 -1.9918 44 1 -0.4093 -6.7326 -3.2041 45 1 -1.3150 -5.8785 -0.6688 46 1 -3.7148 -7.0501 1.3301 47 1 0.4590 -4.7941 -0.0753 48 1 1.9714 -5.5054 -0.6912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133117101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:14 Heat of formation + Delta-G solvation = -30.194366 kcal Electronic energy + Delta-G solvation = -29507.169425 eV Core-core repulsion = 25562.550938 eV Total energy + Delta-G solvation = -3944.618487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26420 -39.99566 -38.24454 -37.22657 -34.99393 -34.18146 -33.55411 -31.92197 -30.94489 -29.74733 -28.33512 -27.58551 -25.75431 -25.04467 -23.87466 -23.19894 -22.52734 -21.22069 -20.20255 -18.76267 -18.37841 -17.75540 -17.13646 -16.93886 -16.25186 -16.06646 -15.17266 -15.00646 -14.93135 -14.79840 -14.47797 -14.10356 -13.80494 -13.55425 -13.38431 -13.26875 -13.01764 -12.91842 -12.88377 -12.66223 -12.47601 -12.29857 -12.01783 -11.93933 -11.66717 -11.25847 -11.07676 -10.91446 -10.78324 -10.64486 -10.32094 -10.23482 -10.15646 -9.93031 -9.87741 -9.64643 -9.58336 -9.16683 -8.83048 -8.50062 -6.87404 -5.70470 -3.00154 0.37694 0.81493 2.57905 2.92310 3.07920 3.45272 3.47000 3.51086 3.52600 4.18701 4.27867 4.36907 4.60136 4.66015 4.69410 4.81843 4.88882 4.91270 5.11386 5.16244 5.22843 5.29745 5.33803 5.42824 5.45688 5.52776 5.60813 5.66230 5.67599 5.72990 5.81521 5.88400 5.93870 5.98172 6.02221 6.09106 6.14505 6.31781 6.34260 6.35444 6.55595 6.62277 6.77674 6.89487 7.06074 7.39732 7.48253 7.73424 8.15114 8.47369 9.58306 10.16278 10.50415 11.51737 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.002966 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.896763 B = 9437.660248 C =10575.210254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.022 3.978 3 C -0.192 4.192 4 C 0.325 3.675 5 O -0.482 6.482 6 N -0.508 5.508 7 C 0.161 3.839 8 C -0.186 4.186 9 C 0.561 3.439 10 O -0.515 6.515 11 N -0.602 5.602 12 C 0.103 3.897 13 C -0.128 4.128 14 C -0.085 4.085 15 H 0.074 0.926 16 C -0.153 4.153 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.287 1.287 28 H -0.286 1.286 29 C 0.119 3.881 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.166 0.834 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.020 0.980 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.104 0.896 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.610 17.248 -5.279 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.014 3.986 3 C -0.213 4.213 4 C 0.148 3.852 5 O -0.290 6.290 6 N -0.227 5.227 7 C 0.002 3.998 8 C -0.192 4.192 9 C 0.347 3.653 10 O -0.391 6.391 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.210 4.210 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 C -0.002 4.002 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.183 0.817 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.123 0.877 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.972 16.982 -5.420 23.935 hybrid contribution -1.287 -0.521 0.743 1.575 sum 14.685 16.461 -4.677 22.550 Atomic orbital electron populations 1.20949 0.88864 1.04026 1.04040 1.20290 0.97416 0.90668 0.90227 1.21927 0.93728 0.99485 1.06125 1.19304 0.87068 0.85197 0.93662 1.84708 1.75961 1.34130 1.34151 1.67184 1.41899 0.98194 1.15423 1.22683 0.89976 0.95264 0.91830 1.20969 0.95448 0.94680 1.08069 1.17957 0.82376 0.83011 0.81944 1.90894 1.32039 1.78638 1.37486 1.48106 1.46276 1.13863 1.25223 1.21867 0.92614 1.01074 0.86481 1.21928 1.00694 0.97508 0.96452 1.21080 0.96185 0.94024 0.99102 0.90762 1.21991 0.97497 1.00221 1.01307 1.21680 0.97322 0.99420 0.93684 0.90814 1.20678 0.91392 0.91577 0.93092 1.42414 1.41998 1.11325 1.42040 1.19148 1.13935 0.88720 1.15516 0.91316 1.24749 0.99756 0.97337 0.99033 1.69664 1.33537 1.29017 1.25583 0.86291 0.79121 0.83626 0.77260 1.21720 1.21347 1.21301 1.21807 0.98249 0.80645 0.99477 0.89192 0.90617 0.90134 0.83555 0.73837 0.81708 0.90417 0.90772 0.91547 0.90777 0.91724 0.93105 0.92442 0.95911 0.96173 0.78111 0.93451 0.87742 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.35 36.01 0.34 -0.95 16 2 C 0.02 0.24 5.94 -103.96 -0.62 -0.38 16 3 C -0.19 -1.76 9.74 -39.34 -0.38 -2.14 16 4 C 0.33 3.26 7.74 -16.96 -0.13 3.13 16 5 O -0.48 -3.92 13.55 -18.17 -0.25 -4.16 16 6 N -0.51 -5.73 10.37 -12.97 -0.13 -5.87 16 7 C 0.16 1.73 8.96 -17.14 -0.15 1.58 16 8 C -0.19 -2.26 4.61 -104.82 -0.48 -2.74 16 9 C 0.56 8.37 6.17 -12.44 -0.08 8.29 16 10 O -0.52 -9.91 15.46 5.29 0.08 -9.83 16 11 N -0.60 -8.09 2.97 -173.96 -0.52 -8.60 16 12 C 0.10 1.03 5.11 -3.71 -0.02 1.01 16 13 C -0.13 -1.27 5.62 -26.61 -0.15 -1.42 16 14 C -0.08 -1.01 2.71 -90.57 -0.25 -1.25 16 15 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.15 -1.65 8.12 37.16 0.30 -1.35 16 17 C -0.10 -1.60 2.15 -90.50 -0.19 -1.79 16 18 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.14 5.19 -4.04 -0.02 3.12 16 20 N -0.73 -18.62 5.38 -59.91 -0.32 -18.95 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 25 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.12 1.92 5.06 -3.71 -0.02 1.90 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.08 1.04 6.70 -51.93 -0.35 0.69 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.40 1.24 9.06 45.56 0.41 1.65 16 35 H 0.17 1.48 7.76 -52.49 -0.41 1.07 16 36 H 0.08 0.73 5.39 -51.93 -0.28 0.45 16 37 H 0.07 0.64 6.71 -51.93 -0.35 0.30 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 43 H 0.02 0.44 6.73 -51.93 -0.35 0.10 16 44 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 45 H 0.38 10.47 6.89 -40.82 -0.28 10.19 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 47 H 0.10 2.12 6.20 -51.93 -0.32 1.80 16 48 H 0.07 1.10 6.70 -51.93 -0.35 0.75 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -35.04 376.63 -8.09 -43.12 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.22 Total: 9.38 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.10 Total: -0.43 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.25 Total: -61.44 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.16 Total: -13.99 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.04 -8.09 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133117101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.927 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds