Wall clock time and date at job start Tue Mar 31 2020 17:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37994 * 120.82349 * 2 1 4 4 C 1.39119 * 119.26859 * 179.97438 * 3 2 1 5 5 O 1.35494 * 119.52894 * 179.97438 * 4 3 2 6 6 N 1.32444 * 120.94803 * 359.97438 * 4 3 2 7 7 C 1.31638 * 121.79881 * 359.72349 * 6 4 3 8 8 C 1.39566 * 120.62432 * 0.54383 * 7 6 4 9 9 C 1.47619 * 120.49860 * 179.74658 * 8 7 6 10 10 O 1.21583 * 119.99948 * 125.99827 * 9 8 7 11 11 N 1.34769 * 119.99969 * 306.00013 * 9 8 7 12 12 C 1.46927 * 120.63443 * 354.27960 * 11 9 8 13 13 C 1.53198 * 108.77798 * 233.59071 * 12 11 9 14 14 C 1.53042 * 109.33464 * 305.37757 * 13 12 11 15 15 H 1.08996 * 109.48534 * 181.35646 * 14 13 12 16 16 C 1.53005 * 109.43180 * 301.31269 * 14 13 12 17 17 C 1.53044 * 109.54081 * 61.31338 * 14 13 12 18 18 H 1.09000 * 109.49158 * 58.65152 * 17 14 13 19 19 C 1.52994 * 109.49636 * 178.71710 * 17 14 13 20 20 N 1.46500 * 109.47135 * 184.94063 * 19 17 14 21 21 C 1.36939 * 120.00046 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99894 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99908 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99948 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46796 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.46942 * 299.99723 * 25 23 21 28 28 H 1.48494 * 109.47231 * 59.99882 * 25 23 21 29 29 C 1.46930 * 120.63084 * 174.25627 * 11 9 8 30 30 H 1.09006 * 109.46511 * 274.91370 * 1 2 3 31 31 H 1.09002 * 109.47085 * 34.91270 * 1 2 3 32 32 H 1.08998 * 109.47046 * 154.91859 * 1 2 3 33 33 H 1.08002 * 120.36627 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00183 * 89.99546 * 5 4 3 35 35 H 1.07993 * 119.68985 * 180.26702 * 7 6 4 36 36 H 1.09002 * 109.58234 * 353.37222 * 12 11 9 37 37 H 1.08997 * 109.59096 * 113.65651 * 12 11 9 38 38 H 1.08992 * 109.50009 * 65.30767 * 13 12 11 39 39 H 1.08995 * 109.49858 * 185.40864 * 13 12 11 40 40 H 1.09001 * 109.47306 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.46906 * 300.05241 * 16 14 13 42 42 H 1.08998 * 109.47203 * 60.05059 * 16 14 13 43 43 H 1.08999 * 109.47638 * 64.93508 * 19 17 14 44 44 H 1.09007 * 109.47361 * 304.93822 * 19 17 14 45 45 H 0.97001 * 119.99785 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99698 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.58793 * 6.62570 * 29 11 9 48 48 H 1.09002 * 109.70342 * 246.27093 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0067 0.0016 7 6 3.6205 -1.1601 0.0075 8 6 2.2256 -1.2044 0.0016 9 6 1.5171 -2.4995 0.0027 10 8 0.6787 -2.7331 0.8516 11 7 1.7997 -3.4229 -0.9374 12 6 2.7169 -3.1105 -2.0419 13 6 2.0163 -3.4227 -3.3680 14 6 1.5227 -4.8712 -3.3516 15 1 1.0450 -5.1033 -4.3034 16 6 2.7103 -5.8113 -3.1350 17 6 0.5132 -5.0552 -2.2161 18 1 -0.3216 -4.3686 -2.3568 19 6 -0.0036 -6.4952 -2.2206 20 7 -1.0550 -6.6399 -1.2108 21 6 -1.6700 -7.8502 -1.0311 22 1 -1.3802 -8.6979 -1.6342 23 6 -2.6658 -7.9873 -0.0739 24 7 -3.0186 -6.9543 0.6614 25 14 -3.5042 -9.6385 0.1716 26 1 -4.5239 -9.5211 1.2449 27 1 -4.1631 -10.0520 -1.0934 28 1 -2.4927 -10.6546 0.5581 29 6 1.1967 -4.7614 -0.8770 30 1 -0.3632 0.0880 1.0240 31 1 -0.3633 0.8427 -0.5882 32 1 -0.3633 -0.9307 -0.4356 33 1 1.6937 2.1314 0.0004 34 1 4.5070 2.6451 0.8832 35 1 4.1848 -2.0809 0.0125 36 1 2.9821 -2.0538 -2.0087 37 1 3.6183 -3.7165 -1.9509 38 1 1.1677 -2.7512 -3.4981 39 1 2.7179 -3.2867 -4.1910 40 1 2.3595 -6.8432 -3.1237 41 1 3.4294 -5.6804 -3.9436 42 1 3.1880 -5.5798 -2.1830 43 1 0.8162 -7.1762 -1.9918 44 1 -0.4093 -6.7326 -3.2041 45 1 -1.3150 -5.8785 -0.6688 46 1 -3.7148 -7.0501 1.3301 47 1 0.4590 -4.7941 -0.0753 48 1 1.9714 -5.5054 -0.6912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133117101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:13 Heat of formation + Delta-G solvation = -57.780200 kcal Electronic energy + Delta-G solvation = -29508.365637 eV Core-core repulsion = 25562.550938 eV Total energy + Delta-G solvation = -3945.814698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19693 -40.98495 -39.35534 -38.02197 -36.65387 -35.08565 -34.86705 -33.50590 -32.05539 -31.18511 -29.17555 -28.65768 -27.25515 -26.15703 -24.93809 -24.76145 -23.37785 -22.59096 -21.32034 -19.69542 -19.40389 -18.94679 -18.64630 -18.02494 -17.33114 -16.85264 -16.78377 -16.27000 -16.08679 -15.73548 -15.56400 -15.40474 -15.20399 -14.76794 -14.52346 -14.47606 -14.24844 -14.08378 -13.88138 -13.70611 -13.68767 -13.13653 -13.03804 -12.96330 -12.83268 -12.74434 -12.63589 -12.45775 -12.17662 -12.04477 -11.89951 -11.73710 -11.43604 -11.24865 -11.13766 -10.91431 -10.69824 -10.54652 -10.01027 -9.63642 -8.99497 -7.93698 -5.23892 -0.44044 0.02137 1.45382 1.48036 1.49463 1.55600 1.86114 2.32714 2.55901 2.67126 3.29150 3.39033 3.48050 3.52921 3.68244 3.78436 3.84730 3.91575 4.05302 4.13836 4.21406 4.25878 4.32231 4.38427 4.48585 4.54952 4.57501 4.61277 4.65576 4.68928 4.77117 4.83271 4.91254 4.94197 4.99001 5.10905 5.13793 5.17014 5.26663 5.30627 5.34531 5.40214 5.46915 5.49621 5.61213 6.26785 6.30216 6.52142 6.75376 7.01545 7.32471 8.09405 8.31302 9.29515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.002966 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.896763 B = 9437.660248 C =10575.210254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.015 3.985 3 C -0.181 4.181 4 C 0.331 3.669 5 O -0.485 6.485 6 N -0.523 5.523 7 C 0.169 3.831 8 C -0.202 4.202 9 C 0.560 3.440 10 O -0.573 6.573 11 N -0.596 5.596 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.079 4.079 15 H 0.080 0.920 16 C -0.150 4.150 17 C -0.089 4.089 18 H 0.049 0.951 19 C 0.160 3.840 20 N -0.748 5.748 21 C -0.245 4.245 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.976 3.024 26 H -0.298 1.298 27 H -0.276 1.276 28 H -0.276 1.276 29 C 0.129 3.871 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.175 0.825 34 H 0.426 0.574 35 H 0.181 0.819 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.033 0.967 44 H 0.023 0.977 45 H 0.370 0.630 46 H 0.250 0.750 47 H 0.053 0.947 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 18.242 -7.174 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.007 3.993 3 C -0.202 4.202 4 C 0.153 3.847 5 O -0.297 6.297 6 N -0.242 5.242 7 C 0.011 3.989 8 C -0.208 4.208 9 C 0.348 3.652 10 O -0.453 6.453 11 N -0.328 5.328 12 C -0.022 4.022 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.098 0.902 16 C -0.207 4.207 17 C -0.109 4.109 18 H 0.067 0.933 19 C 0.033 3.967 20 N -0.391 5.391 21 C -0.377 4.377 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.224 1.224 27 H -0.202 1.202 28 H -0.202 1.202 29 C 0.007 3.993 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.198 0.802 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.202 0.798 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.593 17.983 -7.375 26.897 hybrid contribution -1.997 -0.735 1.288 2.487 sum 16.596 17.247 -6.087 24.697 Atomic orbital electron populations 1.20906 0.89135 1.03504 1.03994 1.20407 0.97438 0.91079 0.90421 1.22101 0.93482 0.99749 1.04865 1.19486 0.87475 0.85419 0.92324 1.84662 1.75635 1.33175 1.36191 1.67263 1.42146 0.98604 1.16223 1.22823 0.89206 0.95914 0.90991 1.20764 0.96055 0.93349 1.10620 1.18445 0.81650 0.83970 0.81154 1.90861 1.34755 1.79835 1.39804 1.48141 1.46182 1.12515 1.25929 1.22174 0.92514 1.02453 0.85061 1.21925 1.01121 0.95499 0.97432 1.21058 0.95542 0.96040 0.97114 0.90187 1.21968 0.97326 0.98816 1.02563 1.21530 0.97720 0.96216 0.95431 0.93293 1.20862 0.90066 0.94369 0.91358 1.42677 1.43199 1.10133 1.43060 1.19622 1.13426 0.89817 1.14843 0.90338 1.25639 1.01098 1.01023 0.99340 1.69861 1.34403 1.31366 1.26586 0.85180 0.77884 0.79362 0.77145 1.22390 1.20173 1.20177 1.21454 0.97385 0.82553 0.97940 0.89684 0.87732 0.93325 0.80748 0.71175 0.80202 0.89103 0.88334 0.92559 0.87226 0.93165 0.90155 0.92327 0.94965 0.95947 0.79787 0.94150 0.92878 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.35 71.24 0.67 -1.89 16 2 C 0.01 0.31 5.94 -19.43 -0.12 0.19 16 3 C -0.18 -2.89 9.74 22.42 0.22 -2.67 16 4 C 0.33 5.73 7.74 84.81 0.66 6.38 16 5 O -0.49 -6.33 13.55 -87.94 -1.19 -7.52 16 6 N -0.52 -10.59 10.37 -307.81 -3.19 -13.78 16 7 C 0.17 3.38 8.96 85.04 0.76 4.14 16 8 C -0.20 -4.86 4.61 -19.99 -0.09 -4.95 16 9 C 0.56 17.53 6.17 86.72 0.54 18.07 16 10 O -0.57 -24.05 15.46 -3.98 -0.06 -24.12 16 11 N -0.60 -16.31 2.97 -822.56 -2.44 -18.75 16 12 C 0.10 1.78 5.11 86.36 0.44 2.22 16 13 C -0.12 -2.10 5.62 30.67 0.17 -1.93 16 14 C -0.08 -1.72 2.71 -10.76 -0.03 -1.75 16 15 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 16 C -0.15 -2.81 8.12 71.98 0.58 -2.22 16 17 C -0.09 -2.89 2.15 -10.72 -0.02 -2.91 16 18 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 19 C 0.16 6.39 5.19 86.38 0.45 6.84 16 20 N -0.75 -39.66 5.38 -343.46 -1.85 -41.51 16 21 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -62.68 13.06 21.65 0.28 -62.40 16 25 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 C 0.13 4.36 5.06 86.36 0.44 4.80 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.05 1.36 6.70 -2.39 -0.02 1.34 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.43 1.23 9.06 -74.06 -0.67 0.56 16 35 H 0.18 2.88 7.76 -2.91 -0.02 2.86 16 36 H 0.09 1.47 5.39 -2.39 -0.01 1.45 16 37 H 0.10 1.35 6.71 -2.39 -0.02 1.34 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.10 6.57 -2.39 -0.02 1.08 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.09 4.99 -2.39 -0.01 1.08 16 43 H 0.03 1.25 6.73 -2.39 -0.02 1.23 16 44 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.37 21.58 6.89 -92.71 -0.64 20.94 16 46 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.05 2.37 6.20 -2.39 -0.01 2.36 16 48 H 0.08 2.52 6.70 -2.39 -0.02 2.50 16 Total: -1.00 -80.46 376.63 -0.76 -81.23 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.30 Total: 30.48 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.97 Total: 6.77 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -7.20 Total: -136.44 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.25 Total: -31.63 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -80.46 -0.76 -81.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133117101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.447 kcal (2) G-P(sol) polarization free energy of solvation -80.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds