Wall clock time and date at job start Tue Mar 31 2020 17:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38675 * 120.79127 * 2 1 4 4 C 1.38178 * 119.16351 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76697 * 0.03036 * 4 3 2 6 6 C 1.31856 * 121.72236 * 359.67524 * 5 4 3 7 7 C 1.38227 * 120.76364 * 0.58942 * 6 5 4 8 8 C 1.50700 * 120.41627 * 179.72828 * 7 6 5 9 9 C 1.50702 * 109.46909 * 264.71892 * 8 7 6 10 10 O 1.21284 * 120.00262 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99895 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47234 * 179.97438 * 12 11 9 14 14 H 1.09005 * 108.56570 * 59.99673 * 13 12 11 15 15 C 1.46913 * 108.62476 * 177.94586 * 13 12 11 16 16 N 1.50102 * 106.78709 * 178.04537 * 15 13 12 17 17 C 1.36939 * 120.75163 * 111.22934 * 16 15 13 18 18 H 1.07998 * 119.99765 * 155.67700 * 17 16 15 19 19 C 1.38814 * 119.99701 * 335.68090 * 17 16 15 20 20 N 1.31618 * 120.00214 * 340.85203 * 19 17 16 21 21 Si 1.86803 * 119.99857 * 160.85887 * 19 17 16 22 22 H 1.48502 * 109.47413 * 89.99281 * 21 19 17 23 23 H 1.48490 * 109.47185 * 209.99787 * 21 19 17 24 24 H 1.48501 * 109.46842 * 329.99739 * 21 19 17 25 25 C 1.43425 * 118.61308 * 291.15835 * 16 15 13 26 26 C 1.55321 * 116.24241 * 89.39892 * 25 16 15 27 27 C 1.55187 * 108.87731 * 319.46949 * 26 25 16 28 28 O 1.39648 * 110.56669 * 322.14146 * 27 26 25 29 29 H 1.09007 * 109.47103 * 269.97194 * 1 2 3 30 30 H 1.09005 * 109.47214 * 29.96736 * 1 2 3 31 31 H 1.08999 * 109.47634 * 149.97121 * 1 2 3 32 32 H 1.07998 * 120.41620 * 0.05587 * 3 2 1 33 33 H 1.08001 * 119.61670 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.61761 * 180.29085 * 6 5 4 35 35 H 1.09004 * 109.46926 * 144.72113 * 8 7 6 36 36 H 1.08993 * 109.47426 * 24.72082 * 8 7 6 37 37 H 0.97004 * 119.99658 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47490 * 299.99858 * 12 11 9 39 39 H 1.09004 * 109.47038 * 59.99997 * 12 11 9 40 40 H 1.09000 * 109.99041 * 297.23753 * 15 13 12 41 41 H 1.08996 * 109.99030 * 58.60230 * 15 13 12 42 42 H 0.96998 * 120.00013 * 180.02562 * 20 19 17 43 43 H 1.08999 * 108.12379 * 327.63798 * 25 16 15 44 44 H 1.09001 * 108.12423 * 211.16614 * 25 16 15 45 45 H 1.08998 * 109.57557 * 199.64540 * 26 25 16 46 46 H 1.09003 * 109.56747 * 79.28629 * 26 25 16 47 47 H 1.08999 * 109.26061 * 201.86042 * 27 26 25 48 48 H 1.08999 * 109.26051 * 82.41882 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0017 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1909 -0.0007 8 6 1.4908 -2.5116 -0.0003 9 6 1.1393 -2.8921 -1.4155 10 8 1.4473 -2.1623 -2.3340 11 7 0.4817 -4.0428 -1.6605 12 6 0.1395 -4.4123 -3.0361 13 6 -0.5972 -5.7532 -3.0358 14 1 -1.5055 -5.6501 -2.4420 15 6 -0.9745 -6.0816 -4.4172 16 7 -1.6487 -7.4220 -4.3754 17 6 -2.9890 -7.5399 -4.6303 18 1 -3.3911 -8.4781 -4.9833 19 6 -3.8308 -6.4536 -4.4349 20 7 -3.4476 -5.4532 -3.6703 21 14 -5.5076 -6.4115 -5.2573 22 1 -6.5140 -7.0363 -4.3617 23 1 -5.8916 -5.0027 -5.5267 24 1 -5.4501 -7.1624 -6.5371 25 6 -0.8594 -8.5785 -4.0644 26 6 -0.7414 -8.9449 -2.5596 27 6 -0.5696 -7.6402 -1.7371 28 8 0.2376 -6.7304 -2.4232 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5143 32 1 1.6967 2.1377 0.0009 33 1 4.1583 2.0754 -0.0001 34 1 4.1585 -2.0750 0.0077 35 1 0.5785 -2.4246 0.5899 36 1 2.1323 -3.2786 0.4335 37 1 0.2350 -4.6262 -0.9258 38 1 -0.5019 -3.6451 -3.4696 39 1 1.0517 -4.4994 -3.6265 40 1 -1.6646 -5.3314 -4.8033 41 1 -0.0849 -6.1293 -5.0451 42 1 -4.0360 -4.6943 -3.5335 43 1 0.1457 -8.4178 -4.4542 44 1 -1.2879 -9.4325 -4.5889 45 1 0.1245 -9.5892 -2.4075 46 1 -1.6450 -9.4629 -2.2381 47 1 -0.1088 -7.8777 -0.7783 48 1 -1.5484 -7.1929 -1.5639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149860325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:07 Heat of formation + Delta-G solvation = -21.666758 kcal Electronic energy + Delta-G solvation = -29250.954518 eV Core-core repulsion = 25306.705816 eV Total energy + Delta-G solvation = -3944.248702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.63528 -39.45592 -38.64744 -35.06887 -34.67181 -34.32987 -32.64862 -32.15437 -31.20175 -29.08766 -28.37626 -27.48603 -25.41601 -25.21074 -23.08694 -22.54923 -21.76131 -20.83523 -19.99425 -19.61852 -17.23951 -16.91343 -16.86825 -16.54365 -16.11931 -15.77360 -15.07912 -14.92590 -14.79786 -14.53694 -14.28197 -14.00279 -13.83187 -13.44787 -13.18651 -13.01500 -12.96439 -12.90169 -12.75364 -12.59488 -12.38949 -12.02202 -11.87089 -11.48199 -11.44048 -11.24606 -10.87752 -10.76973 -10.53136 -10.20407 -10.01171 -9.82821 -9.69811 -9.56481 -9.53091 -9.48070 -9.02882 -8.83907 -8.70965 -8.53934 -6.85873 -5.96449 -3.34603 1.01098 1.17997 2.82797 3.29578 3.38059 3.39425 3.41269 3.80370 4.31038 4.40100 4.51929 4.58183 4.65576 4.75436 4.83283 5.05779 5.20067 5.20884 5.24635 5.26158 5.36777 5.39922 5.49221 5.66246 5.70131 5.78156 5.85336 5.88512 5.96781 5.97727 6.10533 6.24305 6.29115 6.37529 6.43953 6.53152 6.61959 6.63278 6.66894 6.78104 6.88723 6.92496 7.08138 7.28804 7.68069 7.77589 7.89441 8.09097 8.28209 8.45406 9.03156 9.71363 10.25719 11.12799 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002790 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.479104 B =10034.121943 C =11136.529599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 C -0.175 4.175 4 C 0.095 3.905 5 N -0.490 5.490 6 C 0.113 3.887 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.510 3.490 10 O -0.541 6.541 11 N -0.714 5.714 12 C 0.122 3.878 13 C 0.061 3.939 14 H 0.107 0.893 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.160 3.840 26 C -0.172 4.172 27 C 0.067 3.933 28 O -0.370 6.370 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 7.438 10.814 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.195 4.195 4 C -0.061 4.061 5 N -0.199 5.199 6 C -0.044 4.044 7 C -0.116 4.116 8 C -0.142 4.142 9 C 0.295 3.705 10 O -0.418 6.418 11 N -0.364 5.364 12 C -0.002 4.002 13 C 0.002 3.998 14 H 0.125 0.875 15 C 0.018 3.982 16 N -0.308 5.308 17 C -0.377 4.377 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.554 5.554 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.206 1.206 25 C 0.031 3.969 26 C -0.213 4.213 27 C -0.011 4.011 28 O -0.288 6.288 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.371 8.099 10.096 15.979 hybrid contribution -2.249 -0.323 0.059 2.273 sum 7.122 7.775 10.156 14.640 Atomic orbital electron populations 1.20870 0.90314 1.03948 1.02544 1.20159 0.96720 0.92452 0.93965 1.21984 0.95619 0.98469 1.03389 1.22688 0.91769 0.96203 0.95448 1.67667 1.41097 0.98449 1.12657 1.22592 0.90871 0.96297 0.94611 1.20189 0.94936 0.94324 1.02151 1.20622 1.02248 0.95445 0.95893 1.20357 0.78185 0.81357 0.90627 1.90720 1.53593 1.51308 1.46170 1.45930 1.58020 1.22073 1.10378 1.21697 0.99669 0.96879 0.82004 1.22199 0.93046 0.84847 0.99666 0.87536 1.20742 0.94945 0.89574 0.92972 1.44100 1.05565 1.01774 1.79355 1.19253 0.82916 0.98561 1.36975 0.91315 1.24892 0.97829 0.98354 0.98496 1.69859 1.37310 1.10246 1.37946 0.86278 0.83875 0.76929 0.79586 1.21532 1.21516 1.20574 1.20371 0.94420 0.90363 0.91718 1.23577 0.99686 0.97298 1.00763 1.22343 0.94915 0.90763 0.93029 1.87516 1.32146 1.40520 1.68646 0.90461 0.90855 0.90792 0.84948 0.82980 0.83005 0.87769 0.87705 0.76563 0.90453 0.92069 0.87833 0.96251 0.93507 0.95031 0.94905 0.93167 0.92494 0.93094 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.31 36.00 0.34 -0.83 16 2 C -0.02 -0.29 5.92 -104.32 -0.62 -0.90 16 3 C -0.17 -1.82 9.82 -39.44 -0.39 -2.20 16 4 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 5 N -0.49 -6.41 10.36 -13.25 -0.14 -6.54 16 6 C 0.11 1.40 10.84 -17.54 -0.19 1.21 16 7 C -0.11 -1.36 4.39 -104.48 -0.46 -1.82 16 8 C -0.10 -1.06 5.18 -29.03 -0.15 -1.21 16 9 C 0.51 7.48 7.15 -10.98 -0.08 7.41 16 10 O -0.54 -10.17 16.03 5.55 0.09 -10.08 16 11 N -0.71 -10.57 5.41 -60.30 -0.33 -10.90 16 12 C 0.12 2.17 5.25 -4.04 -0.02 2.15 16 13 C 0.06 1.20 1.98 -29.64 -0.06 1.14 16 14 H 0.11 2.34 5.24 -51.93 -0.27 2.06 16 15 C 0.14 3.16 4.71 -4.94 -0.02 3.14 16 16 N -0.59 -13.82 2.61 -174.52 -0.46 -14.27 16 17 C -0.25 -6.34 9.62 -15.06 -0.14 -6.48 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 20 N -0.91 -23.14 9.57 55.49 0.53 -22.60 16 21 Si 0.90 20.53 29.60 -169.99 -5.03 15.50 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.16 3.32 5.32 -4.44 -0.02 3.29 16 26 C -0.17 -3.12 6.75 -24.34 -0.16 -3.28 16 27 C 0.07 1.20 6.38 38.32 0.24 1.45 16 28 O -0.37 -6.93 9.44 -31.96 -0.30 -7.23 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.10 0.88 7.10 -51.93 -0.37 0.51 16 36 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.40 5.18 8.26 -40.82 -0.34 4.84 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 43 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 44 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.26 6.66 -51.93 -0.35 0.91 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -30.22 382.17 -9.30 -39.53 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.41 Total: 6.99 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.02 Total: 3.85 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.39 Total: -54.32 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.21 Total: -17.31 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.22 -9.30 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149860325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.859 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds