Wall clock time and date at job start Tue Mar 31 2020 17:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38675 * 120.79127 * 2 1 4 4 C 1.38178 * 119.16351 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76697 * 0.03036 * 4 3 2 6 6 C 1.31856 * 121.72236 * 359.67524 * 5 4 3 7 7 C 1.38227 * 120.76364 * 0.58942 * 6 5 4 8 8 C 1.50700 * 120.41627 * 179.72828 * 7 6 5 9 9 C 1.50702 * 109.46909 * 264.71892 * 8 7 6 10 10 O 1.21284 * 120.00262 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99895 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47234 * 179.97438 * 12 11 9 14 14 H 1.09005 * 108.56570 * 59.99673 * 13 12 11 15 15 C 1.46913 * 108.62476 * 177.94586 * 13 12 11 16 16 N 1.50102 * 106.78709 * 178.04537 * 15 13 12 17 17 C 1.36939 * 120.75163 * 111.22934 * 16 15 13 18 18 H 1.07998 * 119.99765 * 155.67700 * 17 16 15 19 19 C 1.38814 * 119.99701 * 335.68090 * 17 16 15 20 20 N 1.31618 * 120.00214 * 340.85203 * 19 17 16 21 21 Si 1.86803 * 119.99857 * 160.85887 * 19 17 16 22 22 H 1.48502 * 109.47413 * 89.99281 * 21 19 17 23 23 H 1.48490 * 109.47185 * 209.99787 * 21 19 17 24 24 H 1.48501 * 109.46842 * 329.99739 * 21 19 17 25 25 C 1.43425 * 118.61308 * 291.15835 * 16 15 13 26 26 C 1.55321 * 116.24241 * 89.39892 * 25 16 15 27 27 C 1.55187 * 108.87731 * 319.46949 * 26 25 16 28 28 O 1.39648 * 110.56669 * 322.14146 * 27 26 25 29 29 H 1.09007 * 109.47103 * 269.97194 * 1 2 3 30 30 H 1.09005 * 109.47214 * 29.96736 * 1 2 3 31 31 H 1.08999 * 109.47634 * 149.97121 * 1 2 3 32 32 H 1.07998 * 120.41620 * 0.05587 * 3 2 1 33 33 H 1.08001 * 119.61670 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.61761 * 180.29085 * 6 5 4 35 35 H 1.09004 * 109.46926 * 144.72113 * 8 7 6 36 36 H 1.08993 * 109.47426 * 24.72082 * 8 7 6 37 37 H 0.97004 * 119.99658 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47490 * 299.99858 * 12 11 9 39 39 H 1.09004 * 109.47038 * 59.99997 * 12 11 9 40 40 H 1.09000 * 109.99041 * 297.23753 * 15 13 12 41 41 H 1.08996 * 109.99030 * 58.60230 * 15 13 12 42 42 H 0.96998 * 120.00013 * 180.02562 * 20 19 17 43 43 H 1.08999 * 108.12379 * 327.63798 * 25 16 15 44 44 H 1.09001 * 108.12423 * 211.16614 * 25 16 15 45 45 H 1.08998 * 109.57557 * 199.64540 * 26 25 16 46 46 H 1.09003 * 109.56747 * 79.28629 * 26 25 16 47 47 H 1.08999 * 109.26061 * 201.86042 * 27 26 25 48 48 H 1.08999 * 109.26051 * 82.41882 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0017 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1909 -0.0007 8 6 1.4908 -2.5116 -0.0003 9 6 1.1393 -2.8921 -1.4155 10 8 1.4473 -2.1623 -2.3340 11 7 0.4817 -4.0428 -1.6605 12 6 0.1395 -4.4123 -3.0361 13 6 -0.5972 -5.7532 -3.0358 14 1 -1.5055 -5.6501 -2.4420 15 6 -0.9745 -6.0816 -4.4172 16 7 -1.6487 -7.4220 -4.3754 17 6 -2.9890 -7.5399 -4.6303 18 1 -3.3911 -8.4781 -4.9833 19 6 -3.8308 -6.4536 -4.4349 20 7 -3.4476 -5.4532 -3.6703 21 14 -5.5076 -6.4115 -5.2573 22 1 -6.5140 -7.0363 -4.3617 23 1 -5.8916 -5.0027 -5.5267 24 1 -5.4501 -7.1624 -6.5371 25 6 -0.8594 -8.5785 -4.0644 26 6 -0.7414 -8.9449 -2.5596 27 6 -0.5696 -7.6402 -1.7371 28 8 0.2376 -6.7304 -2.4232 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5143 32 1 1.6967 2.1377 0.0009 33 1 4.1583 2.0754 -0.0001 34 1 4.1585 -2.0750 0.0077 35 1 0.5785 -2.4246 0.5899 36 1 2.1323 -3.2786 0.4335 37 1 0.2350 -4.6262 -0.9258 38 1 -0.5019 -3.6451 -3.4696 39 1 1.0517 -4.4994 -3.6265 40 1 -1.6646 -5.3314 -4.8033 41 1 -0.0849 -6.1293 -5.0451 42 1 -4.0360 -4.6943 -3.5335 43 1 0.1457 -8.4178 -4.4542 44 1 -1.2879 -9.4325 -4.5889 45 1 0.1245 -9.5892 -2.4075 46 1 -1.6450 -9.4629 -2.2381 47 1 -0.1088 -7.8777 -0.7783 48 1 -1.5484 -7.1929 -1.5639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149860325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:06 Heat of formation + Delta-G solvation = -40.527253 kcal Electronic energy + Delta-G solvation = -29251.772370 eV Core-core repulsion = 25306.705816 eV Total energy + Delta-G solvation = -3945.066555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56890 -40.82734 -39.97572 -36.79543 -35.96778 -35.30375 -33.87616 -33.45646 -32.86945 -30.46916 -29.45607 -28.44788 -27.05992 -26.76763 -24.40532 -23.66825 -22.72472 -22.38055 -21.33828 -21.13177 -18.94822 -18.14532 -17.81532 -17.62996 -17.39320 -17.04288 -16.64941 -16.29769 -15.98181 -15.91428 -15.62782 -15.44211 -15.02257 -14.83072 -14.36446 -14.23429 -14.20196 -14.00854 -13.73739 -13.66359 -13.56094 -13.45316 -13.28185 -12.99858 -12.78872 -12.60543 -12.50507 -12.31110 -12.26928 -11.92264 -11.76780 -11.37187 -11.18534 -11.03505 -10.55680 -10.40499 -10.32438 -10.26126 -10.03750 -9.88302 -8.71333 -7.89730 -5.29806 0.17138 0.34073 1.46811 1.51646 1.58570 1.67908 2.26341 2.52362 2.90345 3.13120 3.27942 3.50668 3.51744 3.70748 3.82568 3.93182 4.03919 4.04505 4.19430 4.29215 4.38633 4.42250 4.49096 4.50145 4.57787 4.60936 4.70334 4.73028 4.74715 4.79445 4.80884 4.90354 4.99600 5.06547 5.08990 5.19230 5.19268 5.20029 5.35251 5.40985 5.42792 5.45782 5.52838 5.68522 5.82239 6.36587 6.53275 6.61968 7.05117 7.11095 7.29616 7.83226 8.36300 9.16390 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002790 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.479104 B =10034.121943 C =11136.529599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 C -0.177 4.177 4 C 0.085 3.915 5 N -0.518 5.518 6 C 0.096 3.904 7 C -0.129 4.129 8 C -0.090 4.090 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.707 5.707 12 C 0.135 3.865 13 C 0.081 3.919 14 H 0.087 0.913 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.035 4.035 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.153 3.847 26 C -0.165 4.165 27 C 0.068 3.932 28 O -0.366 6.366 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.021 0.979 42 H 0.251 0.749 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 7.428 12.548 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.071 4.071 5 N -0.227 5.227 6 C -0.060 4.060 7 C -0.131 4.131 8 C -0.130 4.130 9 C 0.298 3.702 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.010 3.990 13 C 0.022 3.978 14 H 0.104 0.896 15 C 0.019 3.981 16 N -0.323 5.323 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.232 4.232 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.025 3.975 26 C -0.206 4.206 27 C -0.010 4.010 28 O -0.285 6.285 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.195 0.805 34 H 0.181 0.819 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.684 8.055 11.863 17.303 hybrid contribution -2.314 -0.324 -0.520 2.393 sum 7.370 7.731 11.343 15.581 Atomic orbital electron populations 1.20886 0.89278 1.03376 1.03849 1.20519 0.97699 0.92829 0.93736 1.22309 0.95581 0.99360 1.02426 1.23186 0.92512 0.96602 0.94773 1.67673 1.42026 0.99264 1.13717 1.22876 0.91436 0.96753 0.94933 1.20365 0.94980 0.95130 1.02616 1.20637 1.03808 0.95647 0.92941 1.21074 0.76795 0.80273 0.92012 1.90701 1.55269 1.52527 1.48046 1.45808 1.58010 1.22622 1.09355 1.21304 0.98564 0.95418 0.83747 1.21731 0.92585 0.85776 0.97687 0.89553 1.20668 0.94167 0.88685 0.94595 1.44210 1.05231 1.02810 1.80067 1.19377 0.84056 0.98527 1.37365 0.92023 1.25449 1.00337 0.98333 0.99042 1.69978 1.37779 1.10204 1.38186 0.85442 0.80903 0.76358 0.78622 1.21386 1.21930 1.20637 1.20489 0.93920 0.89299 0.93758 1.23494 1.00845 0.97888 0.98396 1.22407 0.94061 0.90053 0.94430 1.87516 1.31878 1.40487 1.68611 0.88130 0.90284 0.92474 0.82357 0.80498 0.81909 0.85319 0.84806 0.75177 0.92316 0.92881 0.90439 0.96053 0.93944 0.94852 0.95239 0.90360 0.92756 0.89291 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.31 71.23 0.66 -1.42 16 2 C -0.04 -0.85 5.92 -19.67 -0.12 -0.97 16 3 C -0.18 -3.39 9.82 22.36 0.22 -3.17 16 4 C 0.09 1.77 11.18 84.67 0.95 2.71 16 5 N -0.52 -13.17 10.36 -195.84 -2.03 -15.20 16 6 C 0.10 2.31 10.84 84.69 0.92 3.23 16 7 C -0.13 -2.91 4.39 -19.77 -0.09 -2.99 16 8 C -0.09 -1.71 5.18 29.10 0.15 -1.55 16 9 C 0.51 14.56 7.15 87.66 0.63 15.19 16 10 O -0.59 -22.13 16.03 -3.04 -0.05 -22.18 16 11 N -0.71 -20.32 5.41 -463.06 -2.51 -22.83 16 12 C 0.14 4.86 5.25 86.38 0.45 5.31 16 13 C 0.08 3.18 1.98 28.71 0.06 3.24 16 14 H 0.09 3.82 5.24 -2.38 -0.01 3.81 16 15 C 0.14 6.49 4.71 83.79 0.39 6.88 16 16 N -0.60 -28.52 2.61 -706.07 -1.84 -30.37 16 17 C -0.26 -13.63 9.62 84.03 0.81 -12.82 16 18 H 0.06 3.20 7.88 -2.91 -0.02 3.18 16 19 C -0.04 -1.81 4.93 84.86 0.42 -1.39 16 20 N -0.92 -47.34 9.57 21.65 0.21 -47.13 16 21 Si 0.96 42.53 29.60 68.60 2.03 44.56 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.15 6.24 5.32 87.75 0.47 6.71 16 26 C -0.17 -5.65 6.75 32.14 0.22 -5.44 16 27 C 0.07 2.29 6.38 72.73 0.46 2.76 16 28 O -0.37 -13.18 9.44 -137.27 -1.30 -14.48 16 29 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 1.29 8.10 -2.38 -0.02 1.27 16 31 H 0.06 1.21 6.36 -2.39 -0.02 1.19 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.13 1.81 7.10 -2.39 -0.02 1.79 16 36 H 0.13 1.75 8.06 -2.39 -0.02 1.73 16 37 H 0.41 9.93 8.26 -92.70 -0.77 9.16 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 3.91 6.03 -2.39 -0.01 3.90 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 43 H 0.03 1.32 7.98 -2.39 -0.02 1.30 16 44 H 0.03 1.19 7.96 -2.39 -0.02 1.18 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.04 1.47 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -66.03 382.17 1.32 -64.71 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.20 Total: 26.65 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.60 Total: 16.27 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -6.17 Total: -115.53 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.34 Total: -36.66 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.03 1.32 -64.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149860325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.184 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds