Wall clock time and date at job start Tue Mar 31 2020 17:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38676 * 120.78774 * 2 1 4 4 C 1.38175 * 119.16502 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76121 * 0.02627 * 4 3 2 6 6 C 1.31852 * 121.72736 * 359.68089 * 5 4 3 7 7 C 1.38228 * 120.76341 * 0.58157 * 6 5 4 8 8 C 1.50696 * 120.41780 * 179.73457 * 7 6 5 9 9 C 1.50701 * 109.46978 * 264.71907 * 8 7 6 10 10 O 1.21281 * 119.99939 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00246 * 180.02562 * 9 8 7 12 12 C 1.46508 * 120.00053 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.46868 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.47771 * 305.00609 * 13 12 11 15 15 C 1.54801 * 109.46905 * 185.00574 * 13 12 11 16 16 N 1.45125 * 109.54275 * 172.11360 * 15 13 12 17 17 C 1.36931 * 118.75785 * 269.29153 * 16 15 13 18 18 H 1.08003 * 120.00165 * 26.09249 * 17 16 15 19 19 C 1.38813 * 120.00127 * 206.09597 * 17 16 15 20 20 N 1.31616 * 120.00062 * 15.46555 * 19 17 16 21 21 Si 1.86806 * 119.99947 * 195.46943 * 19 17 16 22 22 H 1.48502 * 109.47100 * 59.99759 * 21 19 17 23 23 H 1.48506 * 109.46743 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47008 * 299.99757 * 21 19 17 25 25 C 1.47507 * 122.48295 * 89.29129 * 16 15 13 26 26 C 1.53573 * 111.02874 * 318.37316 * 25 16 15 27 27 C 1.51534 * 109.58171 * 320.02447 * 26 25 16 28 28 O 1.38016 * 109.46891 * 65.00002 * 13 12 11 29 29 H 1.08998 * 109.47505 * 269.98108 * 1 2 3 30 30 H 1.09000 * 109.47599 * 29.97617 * 1 2 3 31 31 H 1.09002 * 109.47185 * 149.97500 * 1 2 3 32 32 H 1.08006 * 120.41377 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.62257 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.61822 * 180.29211 * 6 5 4 35 35 H 1.08997 * 109.47278 * 144.72305 * 8 7 6 36 36 H 1.08996 * 109.47377 * 24.71611 * 8 7 6 37 37 H 0.96994 * 120.00235 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.46753 * 60.00106 * 12 11 9 39 39 H 1.08994 * 109.47260 * 300.00427 * 12 11 9 40 40 H 1.09008 * 109.46345 * 292.13459 * 15 13 12 41 41 H 1.09002 * 109.46156 * 52.09365 * 15 13 12 42 42 H 0.97004 * 120.00137 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.16276 * 197.97837 * 25 16 15 44 44 H 1.09001 * 109.12800 * 78.74890 * 25 16 15 45 45 H 1.08993 * 109.45496 * 199.98975 * 26 25 16 46 46 H 1.08998 * 109.45493 * 80.05557 * 26 25 16 47 47 H 1.09005 * 109.58854 * 331.61607 * 27 26 25 48 48 H 1.09003 * 109.59319 * 211.18410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2402 0.0002 -0.0016 6 6 3.5983 -1.1515 0.0041 7 6 2.2166 -1.1908 -0.0006 8 6 1.4909 -2.5115 -0.0001 9 6 1.1393 -2.8921 -1.4152 10 8 1.4481 -2.1629 -2.3338 11 7 0.4818 -4.0428 -1.6601 12 6 0.1396 -4.4125 -3.0359 13 6 -0.5971 -5.7534 -3.0354 14 1 0.0085 -6.5005 -2.5223 15 6 -0.8471 -6.2053 -4.4947 16 7 -1.3755 -7.5569 -4.5006 17 6 -0.4992 -8.6065 -4.5743 18 1 0.5124 -8.4918 -4.2136 19 6 -0.9109 -9.8179 -5.1126 20 7 -2.0182 -9.8808 -5.8213 21 14 0.1065 -11.3591 -4.8310 22 1 0.2040 -11.6285 -3.3739 23 1 -0.5440 -12.5116 -5.5047 24 1 1.4681 -11.1623 -5.3901 25 6 -2.8209 -7.8427 -4.4302 26 6 -3.5158 -6.9227 -3.4156 27 6 -2.6334 -6.7544 -2.1952 28 8 -1.8055 -5.6141 -2.3833 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6965 2.1378 -0.0004 33 1 4.1582 2.0755 -0.0010 34 1 4.1585 -2.0748 0.0078 35 1 0.5786 -2.4246 0.5900 36 1 2.1325 -3.2785 0.4336 37 1 0.2351 -4.6262 -0.9256 38 1 1.0517 -4.4996 -3.6262 39 1 -0.5019 -3.6452 -3.4694 40 1 -1.5645 -5.5329 -4.9653 41 1 0.0914 -6.1799 -5.0485 42 1 -2.3061 -10.7274 -6.1972 43 1 -2.9662 -8.8805 -4.1303 44 1 -3.2637 -7.6893 -5.4143 45 1 -4.4670 -7.3637 -3.1177 46 1 -3.6944 -5.9489 -3.8715 47 1 -2.0115 -7.6406 -2.0688 48 1 -3.2553 -6.6126 -1.3113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149860326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:10 Heat of formation + Delta-G solvation = -49.388517 kcal Electronic energy + Delta-G solvation = -28699.271365 eV Core-core repulsion = 24753.820557 eV Total energy + Delta-G solvation = -3945.450808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55498 -40.71473 -39.97876 -37.00486 -35.94066 -35.29782 -33.73180 -33.47891 -33.25307 -30.48389 -29.30369 -28.35240 -27.19751 -26.83032 -24.51301 -23.66098 -22.72047 -22.29231 -21.45889 -21.08997 -18.87364 -18.19722 -17.78767 -17.62945 -17.44343 -17.22351 -16.77850 -16.56958 -16.03187 -15.93549 -15.62325 -15.48204 -15.07214 -14.75359 -14.37728 -14.33778 -14.22382 -13.91163 -13.72015 -13.66836 -13.55448 -13.45632 -13.12999 -13.03536 -12.78043 -12.74286 -12.51635 -12.41036 -12.24837 -12.10042 -11.76535 -11.48751 -11.31105 -11.04719 -10.53700 -10.39132 -10.31128 -10.26879 -10.06564 -9.87860 -8.73259 -7.90121 -5.37577 0.17864 0.35409 1.46348 1.47184 1.54206 1.67568 2.21606 2.49293 2.76658 2.90880 3.25228 3.52032 3.56402 3.71673 3.84079 3.93895 4.01144 4.05822 4.11411 4.16187 4.22696 4.36683 4.49539 4.52116 4.54121 4.59057 4.62820 4.67427 4.73583 4.75102 4.75989 4.85657 4.90654 4.93372 5.07982 5.14865 5.19246 5.21178 5.25491 5.42876 5.45302 5.46844 5.60421 5.74797 5.83462 6.34645 6.60389 6.75009 7.06440 7.13479 7.29087 7.85730 8.26819 9.15421 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002332 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.354759 B =12004.097112 C =12799.264003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.177 4.177 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.128 4.128 8 C -0.091 4.091 9 C 0.513 3.487 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.144 3.856 13 C 0.088 3.912 14 H 0.047 0.953 15 C 0.122 3.878 16 N -0.606 5.606 17 C -0.270 4.270 18 H 0.068 0.932 19 C -0.046 4.046 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.278 1.278 25 C 0.185 3.815 26 C -0.165 4.165 27 C 0.092 3.908 28 O -0.390 6.390 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.416 0.584 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.250 0.750 43 H 0.046 0.954 44 H -0.009 1.009 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 17.465 17.396 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.072 4.072 5 N -0.229 5.229 6 C -0.062 4.062 7 C -0.131 4.131 8 C -0.131 4.131 9 C 0.301 3.699 10 O -0.463 6.463 11 N -0.363 5.363 12 C 0.019 3.981 13 C 0.027 3.973 14 H 0.065 0.935 15 C -0.006 4.006 16 N -0.328 5.328 17 C -0.400 4.400 18 H 0.086 0.914 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.204 1.204 25 C 0.060 3.940 26 C -0.204 4.204 27 C 0.016 3.984 28 O -0.309 6.309 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.010 0.990 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.638 18.001 16.685 24.813 hybrid contribution -0.518 -1.739 -0.641 1.924 sum 3.120 16.263 16.043 23.057 Atomic orbital electron populations 1.20886 0.88989 1.03525 1.03890 1.20539 0.97872 0.92695 0.93645 1.22313 0.95492 0.99489 1.02392 1.23170 0.92629 0.96536 0.94873 1.67663 1.42172 0.99342 1.13745 1.22887 0.91607 0.96673 0.95011 1.20371 0.94847 0.95285 1.02566 1.20647 1.03889 0.95469 0.93123 1.21018 0.76743 0.80271 0.91912 1.90721 1.55135 1.52488 1.47945 1.45857 1.58053 1.22957 1.09426 1.21118 0.98291 0.94653 0.84045 1.22249 0.85273 0.95073 0.94740 0.93530 1.21576 0.97722 0.86184 0.95111 1.44033 1.02479 1.00974 1.85307 1.19477 0.95298 0.91504 1.33764 0.91417 1.25777 0.99047 1.01894 0.97430 1.70224 1.26150 1.25268 1.36415 0.85386 0.78202 0.79165 0.77945 1.20049 1.22214 1.20375 1.20782 0.82013 0.97015 0.94203 1.22626 0.99827 1.00158 0.97742 1.22076 0.91643 0.87780 0.96891 1.86098 1.31445 1.36442 1.76916 0.88175 0.90287 0.92070 0.82376 0.80728 0.82015 0.85024 0.84896 0.74779 0.90795 0.91807 0.94069 0.93331 0.94105 0.93506 0.99044 0.89694 0.92185 0.94162 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.31 71.23 0.66 -0.93 16 2 C -0.04 -0.72 5.92 -19.67 -0.12 -0.84 16 3 C -0.18 -2.96 9.82 22.36 0.22 -2.74 16 4 C 0.08 1.59 11.18 84.67 0.95 2.53 16 5 N -0.52 -12.32 10.36 -195.85 -2.03 -14.35 16 6 C 0.09 2.05 10.84 84.69 0.92 2.97 16 7 C -0.13 -2.49 4.39 -19.78 -0.09 -2.58 16 8 C -0.09 -1.34 5.18 29.10 0.15 -1.19 16 9 C 0.51 11.86 7.15 87.66 0.63 12.49 16 10 O -0.58 -19.06 16.03 -3.03 -0.05 -19.11 16 11 N -0.71 -15.69 5.49 -463.07 -2.54 -18.23 16 12 C 0.14 4.03 5.34 86.37 0.46 4.49 16 13 C 0.09 2.84 2.68 31.21 0.08 2.92 16 14 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 15 C 0.12 4.90 5.12 87.25 0.45 5.35 16 16 N -0.61 -29.08 2.23 -698.14 -1.55 -30.63 16 17 C -0.27 -14.23 9.46 84.03 0.80 -13.44 16 18 H 0.07 3.47 7.88 -2.91 -0.02 3.44 16 19 C -0.05 -2.48 4.89 84.86 0.41 -2.07 16 20 N -0.93 -54.07 11.00 21.65 0.24 -53.83 16 21 Si 0.96 43.59 29.58 68.60 2.03 45.62 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.18 8.65 4.70 86.38 0.41 9.05 16 26 C -0.16 -5.74 5.79 30.31 0.18 -5.57 16 27 C 0.09 2.85 6.37 71.50 0.46 3.31 16 28 O -0.39 -12.07 9.38 -117.87 -1.11 -13.18 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.06 0.99 6.36 -2.39 -0.02 0.97 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.13 1.25 7.10 -2.39 -0.02 1.24 16 36 H 0.13 1.24 8.06 -2.39 -0.02 1.22 16 37 H 0.42 7.15 8.46 -92.71 -0.78 6.36 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.65 8.11 -2.38 -0.02 1.63 16 41 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.05 2.44 6.37 -2.38 -0.02 2.42 16 44 H -0.01 -0.45 8.04 -2.39 -0.02 -0.47 16 45 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 47 H 0.04 1.45 7.40 -2.38 -0.02 1.43 16 48 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -72.36 386.73 1.72 -70.64 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.18 Total: 19.31 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.56 Total: 13.76 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -5.89 Total: -117.05 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.15 Total: -32.29 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.36 1.72 -70.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149860326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.252 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds