Wall clock time and date at job start Tue Mar 31 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37993 * 120.81635 * 2 1 4 4 C 1.39133 * 119.26273 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52797 * 179.97438 * 4 3 2 6 6 N 1.32434 * 120.94888 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79969 * 359.70296 * 6 4 3 8 8 C 1.39571 * 120.62171 * 0.58288 * 7 6 4 9 9 C 1.47616 * 120.49474 * 179.69804 * 8 7 6 10 10 O 1.21589 * 119.99522 * 125.37718 * 9 8 7 11 11 N 1.34775 * 120.00549 * 305.37606 * 9 8 7 12 12 C 1.46922 * 120.62749 * 3.95683 * 11 9 8 13 13 C 1.53195 * 108.77867 * 233.62896 * 12 11 9 14 14 C 1.53041 * 109.30861 * 305.36885 * 13 12 11 15 15 C 1.53077 * 109.66066 * 61.30056 * 14 13 12 16 16 C 1.46924 * 120.63012 * 183.97967 * 11 9 8 17 17 H 1.09002 * 109.58509 * 246.30008 * 16 11 9 18 18 C 1.52997 * 109.58852 * 6.58185 * 16 11 9 19 19 N 1.46495 * 109.47069 * 178.71403 * 18 16 11 20 20 C 1.46507 * 119.99975 * 265.96430 * 19 18 16 21 21 C 1.36936 * 120.00572 * 85.96409 * 19 18 16 22 22 H 1.07991 * 120.00588 * 217.38759 * 21 19 18 23 23 C 1.38815 * 119.99663 * 37.38657 * 21 19 18 24 24 N 1.31619 * 119.99903 * 26.18284 * 23 21 19 25 25 Si 1.86798 * 119.99905 * 206.18323 * 23 21 19 26 26 H 1.48501 * 109.46856 * 175.00191 * 25 23 21 27 27 H 1.48500 * 109.47243 * 295.00030 * 25 23 21 28 28 H 1.48500 * 109.47082 * 55.00651 * 25 23 21 29 29 H 1.08999 * 109.46465 * 272.82827 * 1 2 3 30 30 H 1.08997 * 109.47098 * 32.82837 * 1 2 3 31 31 H 1.08994 * 109.47074 * 152.83184 * 1 2 3 32 32 H 1.07994 * 120.37469 * 359.96362 * 3 2 1 33 33 H 0.96701 * 113.99803 * 89.99411 * 5 4 3 34 34 H 1.07998 * 119.69238 * 180.28763 * 7 6 4 35 35 H 1.08999 * 109.59283 * 353.41864 * 12 11 9 36 36 H 1.09004 * 109.58846 * 113.70214 * 12 11 9 37 37 H 1.08997 * 109.49298 * 65.31711 * 13 12 11 38 38 H 1.08988 * 109.49858 * 185.38510 * 13 12 11 39 39 H 1.08998 * 109.45695 * 181.38217 * 14 13 12 40 40 H 1.09003 * 109.46500 * 301.35495 * 14 13 12 41 41 H 1.08998 * 109.62085 * 178.82845 * 15 14 13 42 42 H 1.08998 * 109.38923 * 58.71695 * 15 14 13 43 43 H 1.09002 * 109.47090 * 58.71192 * 18 16 11 44 44 H 1.08999 * 109.47493 * 298.71441 * 18 16 11 45 45 H 1.09003 * 109.47288 * 271.34986 * 20 19 18 46 46 H 1.08999 * 109.46998 * 31.34729 * 20 19 18 47 47 H 1.09003 * 109.47043 * 151.34837 * 20 19 18 48 48 H 0.96997 * 119.99874 * 5.81379 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1474 0.0005 5 8 4.3044 2.3078 0.0000 6 7 4.2549 -0.0065 0.0005 7 6 3.6206 -1.1600 0.0058 8 6 2.2256 -1.2043 -0.0005 9 6 1.5172 -2.4994 -0.0013 10 8 0.6867 -2.7384 0.8540 11 7 1.7910 -3.4168 -0.9498 12 6 2.8521 -3.1783 -1.9377 13 6 2.2674 -3.3568 -3.3424 14 6 1.6106 -4.7353 -3.4456 15 6 0.4695 -4.8395 -2.4306 16 6 1.0338 -4.6741 -1.0160 17 1 1.6936 -5.5106 -0.7857 18 6 -0.1154 -4.6344 -0.0067 19 7 -0.8871 -5.8765 -0.0963 20 6 -2.0761 -5.9402 -0.9499 21 6 -0.4972 -6.9779 0.6177 22 1 -0.5954 -7.9633 0.1870 23 6 0.0244 -6.8278 1.8953 24 7 -0.3054 -5.7812 2.6220 25 14 1.1945 -8.1113 2.5832 26 1 1.6999 -7.6622 3.9054 27 1 0.4769 -9.4019 2.7400 28 1 2.3367 -8.2899 1.6513 29 1 -0.3632 0.0507 1.0264 30 1 -0.3633 0.8635 -0.5571 31 1 -0.3633 -0.9142 -0.4692 32 1 1.6936 2.1314 -0.0006 33 1 4.5070 2.6453 0.8833 34 1 4.1849 -2.0808 0.0104 35 1 3.2332 -2.1632 -1.8269 36 1 3.6620 -3.8914 -1.7835 37 1 1.5215 -2.5837 -3.5268 38 1 3.0646 -3.2769 -4.0812 39 1 1.2152 -4.8746 -4.4518 40 1 2.3513 -5.5072 -3.2365 41 1 -0.0112 -5.8137 -2.5190 42 1 -0.2607 -4.0539 -2.6251 43 1 -0.7641 -3.7869 -0.2279 44 1 0.2886 -4.5296 1.0001 45 1 -2.9505 -5.6277 -0.3790 46 1 -1.9451 -5.2776 -1.8055 47 1 -2.2174 -6.9626 -1.3004 48 1 -0.9765 -5.1593 2.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158461379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:35 Heat of formation + Delta-G solvation = -0.041256 kcal Electronic energy + Delta-G solvation = -30661.965065 eV Core-core repulsion = 26718.654115 eV Total energy + Delta-G solvation = -3943.310950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11411 -39.76843 -37.55784 -36.88859 -35.62326 -34.02492 -32.78831 -31.78714 -30.82142 -29.97917 -28.13301 -26.81749 -25.34000 -24.68966 -23.84892 -22.92429 -22.05404 -20.91270 -20.34101 -19.09168 -18.56658 -17.59440 -17.16657 -16.63564 -16.04950 -15.60969 -15.18470 -14.74897 -14.44922 -14.22060 -14.06392 -13.81236 -13.66893 -13.49604 -13.34545 -13.12182 -13.02300 -12.99053 -12.67610 -12.61485 -12.33589 -12.17120 -11.89208 -11.60210 -11.20746 -11.09087 -11.05945 -10.72144 -10.66891 -10.44191 -10.16928 -10.12816 -9.99283 -9.76909 -9.72115 -9.26896 -9.12173 -8.66913 -8.27302 -8.11627 -6.63277 -5.86412 -3.24964 0.56153 0.96980 2.86114 3.15480 3.25793 3.53124 3.55932 3.62490 3.74541 4.35075 4.46528 4.55706 4.68377 4.81642 4.84403 4.96559 5.04504 5.10379 5.25496 5.38921 5.40550 5.45853 5.51365 5.54571 5.56292 5.61903 5.70811 5.85588 5.89610 5.93197 5.98268 6.10600 6.16127 6.20428 6.24935 6.35455 6.41952 6.50826 6.57694 6.72901 6.84476 6.91265 7.10538 7.19450 7.62799 7.68952 7.84641 8.20625 8.50005 8.75132 9.29594 9.96066 10.42926 11.29055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004138 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.649078 B = 6765.706368 C = 7363.690118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.020 3.980 3 C -0.192 4.192 4 C 0.321 3.679 5 O -0.483 6.483 6 N -0.508 5.508 7 C 0.157 3.843 8 C -0.181 4.181 9 C 0.554 3.446 10 O -0.493 6.493 11 N -0.597 5.597 12 C 0.099 3.901 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.120 4.120 16 C 0.128 3.872 17 H 0.074 0.926 18 C 0.145 3.855 19 N -0.600 5.600 20 C 0.120 3.880 21 C -0.364 4.364 22 H 0.047 0.953 23 C -0.015 4.015 24 N -0.893 5.893 25 Si 1.058 2.942 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.116 0.884 45 H -0.002 1.002 46 H 0.024 0.976 47 H 0.032 0.968 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 13.562 -9.912 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.012 3.988 3 C -0.213 4.213 4 C 0.143 3.857 5 O -0.290 6.290 6 N -0.227 5.227 7 C -0.001 4.001 8 C -0.186 4.186 9 C 0.339 3.661 10 O -0.367 6.367 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.169 4.169 14 C -0.158 4.158 15 C -0.158 4.158 16 C 0.024 3.976 17 H 0.092 0.908 18 C 0.019 3.981 19 N -0.324 5.324 20 C -0.025 4.025 21 C -0.494 4.494 22 H 0.065 0.935 23 C -0.220 4.220 24 N -0.530 5.530 25 Si 0.887 3.113 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.183 0.817 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.133 0.867 45 H 0.016 0.984 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.146 13.073 -8.734 17.707 hybrid contribution -1.605 0.404 -1.083 1.978 sum 6.541 13.477 -9.817 17.910 Atomic orbital electron populations 1.20909 0.89067 1.03553 1.04062 1.20235 0.97299 0.90670 0.90635 1.21895 0.93728 0.99368 1.06310 1.19281 0.87054 0.85174 0.94152 1.84703 1.76014 1.34211 1.34104 1.67167 1.41954 0.98192 1.15388 1.22729 0.90209 0.95198 0.91996 1.21134 0.95433 0.95121 1.06936 1.17986 0.83062 0.82851 0.82163 1.90992 1.32633 1.76999 1.36118 1.48268 1.36012 1.19173 1.29712 1.21899 0.90284 1.01732 0.88542 1.21873 1.00451 0.98423 0.96150 1.21564 0.98572 0.96444 0.99249 1.21948 0.97042 1.02511 0.94306 1.22353 0.95324 0.83151 0.96744 0.90825 1.21755 0.90075 0.86089 1.00174 1.44056 1.25023 1.11521 1.51830 1.21158 0.89947 0.98248 0.93164 1.19764 1.45130 0.86890 0.97586 0.93528 1.25857 1.01974 1.02047 0.92130 1.70707 1.30875 1.15037 1.36400 0.83655 0.76493 0.75074 0.76029 1.21104 1.21994 1.22074 0.89179 0.90900 0.90357 0.83732 0.73972 0.81660 0.90230 0.91107 0.91872 0.91177 0.92299 0.91874 0.90026 0.92840 0.95011 0.86662 0.98368 0.95706 0.94898 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.31 36.01 0.34 -1.10 16 2 C 0.02 0.25 5.94 -103.96 -0.62 -0.37 16 3 C -0.19 -2.09 9.74 -39.34 -0.38 -2.47 16 4 C 0.32 3.79 7.74 -16.96 -0.13 3.65 16 5 O -0.48 -4.65 13.55 -18.19 -0.25 -4.90 16 6 N -0.51 -6.77 10.37 -12.96 -0.13 -6.90 16 7 C 0.16 2.08 8.62 -17.14 -0.15 1.93 16 8 C -0.18 -2.63 4.87 -104.82 -0.51 -3.14 16 9 C 0.55 9.88 6.05 -12.43 -0.08 9.80 16 10 O -0.49 -10.93 11.63 5.29 0.06 -10.87 16 11 N -0.60 -9.97 2.97 -166.41 -0.49 -10.46 16 12 C 0.10 1.25 5.56 -3.71 -0.02 1.23 16 13 C -0.13 -1.50 6.09 -26.61 -0.16 -1.66 16 14 C -0.12 -1.57 5.88 -26.67 -0.16 -1.72 16 15 C -0.12 -1.99 4.04 -26.59 -0.11 -2.10 16 16 C 0.13 2.53 3.19 -67.60 -0.22 2.31 16 17 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 18 C 0.15 3.47 2.86 -4.05 -0.01 3.46 16 19 N -0.60 -15.33 2.24 -181.12 -0.41 -15.73 16 20 C 0.12 2.66 9.74 59.85 0.58 3.24 16 21 C -0.36 -10.30 9.36 -15.06 -0.14 -10.44 16 22 H 0.05 1.33 7.95 -52.49 -0.42 0.92 16 23 C -0.01 -0.43 4.86 -17.43 -0.08 -0.51 16 24 N -0.89 -27.53 12.24 55.49 0.68 -26.86 16 25 Si 1.06 25.68 29.99 -169.99 -5.10 20.58 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.08 1.11 6.83 -51.93 -0.35 0.75 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.40 1.86 9.06 45.56 0.41 2.27 16 34 H 0.17 1.96 7.41 -52.49 -0.39 1.57 16 35 H 0.08 0.92 4.77 -51.93 -0.25 0.67 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.48 6.79 -51.93 -0.35 1.13 16 42 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 43 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 44 H 0.12 3.21 3.55 -51.93 -0.18 3.02 16 45 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 46 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 47 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 48 H 0.27 8.71 7.21 -40.82 -0.29 8.42 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -34.55 372.53 -8.25 -42.80 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.38 Total: 4.61 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.85 Total: 2.12 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.36 Total: -59.95 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.18 Total: -15.77 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.10 Total: 20.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.55 -8.25 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158461379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds