Wall clock time and date at job start Tue Mar 31 2020 17:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37993 * 120.81635 * 2 1 4 4 C 1.39133 * 119.26273 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52797 * 179.97438 * 4 3 2 6 6 N 1.32434 * 120.94888 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79969 * 359.70296 * 6 4 3 8 8 C 1.39571 * 120.62171 * 0.58288 * 7 6 4 9 9 C 1.47616 * 120.49474 * 179.69804 * 8 7 6 10 10 O 1.21589 * 119.99522 * 125.37718 * 9 8 7 11 11 N 1.34775 * 120.00549 * 305.37606 * 9 8 7 12 12 C 1.46922 * 120.62749 * 3.95683 * 11 9 8 13 13 C 1.53195 * 108.77867 * 233.62896 * 12 11 9 14 14 C 1.53041 * 109.30861 * 305.36885 * 13 12 11 15 15 C 1.53077 * 109.66066 * 61.30056 * 14 13 12 16 16 C 1.46924 * 120.63012 * 183.97967 * 11 9 8 17 17 H 1.09002 * 109.58509 * 246.30008 * 16 11 9 18 18 C 1.52997 * 109.58852 * 6.58185 * 16 11 9 19 19 N 1.46495 * 109.47069 * 178.71403 * 18 16 11 20 20 C 1.46507 * 119.99975 * 265.96430 * 19 18 16 21 21 C 1.36936 * 120.00572 * 85.96409 * 19 18 16 22 22 H 1.07991 * 120.00588 * 217.38759 * 21 19 18 23 23 C 1.38815 * 119.99663 * 37.38657 * 21 19 18 24 24 N 1.31619 * 119.99903 * 26.18284 * 23 21 19 25 25 Si 1.86798 * 119.99905 * 206.18323 * 23 21 19 26 26 H 1.48501 * 109.46856 * 175.00191 * 25 23 21 27 27 H 1.48500 * 109.47243 * 295.00030 * 25 23 21 28 28 H 1.48500 * 109.47082 * 55.00651 * 25 23 21 29 29 H 1.08999 * 109.46465 * 272.82827 * 1 2 3 30 30 H 1.08997 * 109.47098 * 32.82837 * 1 2 3 31 31 H 1.08994 * 109.47074 * 152.83184 * 1 2 3 32 32 H 1.07994 * 120.37469 * 359.96362 * 3 2 1 33 33 H 0.96701 * 113.99803 * 89.99411 * 5 4 3 34 34 H 1.07998 * 119.69238 * 180.28763 * 7 6 4 35 35 H 1.08999 * 109.59283 * 353.41864 * 12 11 9 36 36 H 1.09004 * 109.58846 * 113.70214 * 12 11 9 37 37 H 1.08997 * 109.49298 * 65.31711 * 13 12 11 38 38 H 1.08988 * 109.49858 * 185.38510 * 13 12 11 39 39 H 1.08998 * 109.45695 * 181.38217 * 14 13 12 40 40 H 1.09003 * 109.46500 * 301.35495 * 14 13 12 41 41 H 1.08998 * 109.62085 * 178.82845 * 15 14 13 42 42 H 1.08998 * 109.38923 * 58.71695 * 15 14 13 43 43 H 1.09002 * 109.47090 * 58.71192 * 18 16 11 44 44 H 1.08999 * 109.47493 * 298.71441 * 18 16 11 45 45 H 1.09003 * 109.47288 * 271.34986 * 20 19 18 46 46 H 1.08999 * 109.46998 * 31.34729 * 20 19 18 47 47 H 1.09003 * 109.47043 * 151.34837 * 20 19 18 48 48 H 0.96997 * 119.99874 * 5.81379 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1474 0.0005 5 8 4.3044 2.3078 0.0000 6 7 4.2549 -0.0065 0.0005 7 6 3.6206 -1.1600 0.0058 8 6 2.2256 -1.2043 -0.0005 9 6 1.5172 -2.4994 -0.0013 10 8 0.6867 -2.7384 0.8540 11 7 1.7910 -3.4168 -0.9498 12 6 2.8521 -3.1783 -1.9377 13 6 2.2674 -3.3568 -3.3424 14 6 1.6106 -4.7353 -3.4456 15 6 0.4695 -4.8395 -2.4306 16 6 1.0338 -4.6741 -1.0160 17 1 1.6936 -5.5106 -0.7857 18 6 -0.1154 -4.6344 -0.0067 19 7 -0.8871 -5.8765 -0.0963 20 6 -2.0761 -5.9402 -0.9499 21 6 -0.4972 -6.9779 0.6177 22 1 -0.5954 -7.9633 0.1870 23 6 0.0244 -6.8278 1.8953 24 7 -0.3054 -5.7812 2.6220 25 14 1.1945 -8.1113 2.5832 26 1 1.6999 -7.6622 3.9054 27 1 0.4769 -9.4019 2.7400 28 1 2.3367 -8.2899 1.6513 29 1 -0.3632 0.0507 1.0264 30 1 -0.3633 0.8635 -0.5571 31 1 -0.3633 -0.9142 -0.4692 32 1 1.6936 2.1314 -0.0006 33 1 4.5070 2.6453 0.8833 34 1 4.1849 -2.0808 0.0104 35 1 3.2332 -2.1632 -1.8269 36 1 3.6620 -3.8914 -1.7835 37 1 1.5215 -2.5837 -3.5268 38 1 3.0646 -3.2769 -4.0812 39 1 1.2152 -4.8746 -4.4518 40 1 2.3513 -5.5072 -3.2365 41 1 -0.0112 -5.8137 -2.5190 42 1 -0.2607 -4.0539 -2.6251 43 1 -0.7641 -3.7869 -0.2279 44 1 0.2886 -4.5296 1.0001 45 1 -2.9505 -5.6277 -0.3790 46 1 -1.9451 -5.2776 -1.8055 47 1 -2.2174 -6.9626 -1.3004 48 1 -0.9765 -5.1593 2.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158461379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:34 Heat of formation + Delta-G solvation = -25.710815 kcal Electronic energy + Delta-G solvation = -30663.078181 eV Core-core repulsion = 26718.654115 eV Total energy + Delta-G solvation = -3944.424066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.24816 -40.96622 -38.70962 -38.00291 -37.45250 -35.00604 -34.11101 -33.50191 -32.46525 -31.14847 -29.11846 -28.35817 -27.30893 -26.11608 -24.92458 -24.17602 -23.36771 -22.33565 -21.84649 -20.33318 -19.44126 -19.37126 -18.43732 -17.94533 -17.10570 -16.82687 -16.63384 -15.91272 -15.86168 -15.69661 -15.47102 -15.38989 -15.10953 -14.96896 -14.66308 -14.50344 -14.22664 -14.11041 -13.94388 -13.71286 -13.63648 -13.20936 -13.10564 -13.01590 -12.83016 -12.74585 -12.62402 -12.37768 -11.95468 -11.92064 -11.89353 -11.66591 -11.49209 -11.32556 -10.81899 -10.69369 -10.43543 -10.32547 -9.94186 -9.54587 -8.80053 -8.06385 -5.49470 -0.42400 0.00996 1.54514 1.57609 1.62827 1.81421 1.89803 2.31313 2.65822 2.67668 3.23281 3.35306 3.46494 3.53962 3.70996 3.84628 3.88550 3.97615 3.97796 4.10250 4.17004 4.30490 4.33010 4.43658 4.53190 4.55113 4.59970 4.61209 4.65010 4.68204 4.79264 4.86217 4.91372 4.94979 4.97279 5.03313 5.09390 5.14688 5.21252 5.22658 5.34156 5.43029 5.50915 5.88081 5.94961 6.38347 6.43791 6.51271 6.74156 7.08504 7.23426 7.83516 8.28315 8.99091 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004138 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.649078 B = 6765.706368 C = 7363.690118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.014 3.986 3 C -0.179 4.179 4 C 0.328 3.672 5 O -0.484 6.484 6 N -0.523 5.523 7 C 0.161 3.839 8 C -0.199 4.199 9 C 0.551 3.449 10 O -0.549 6.549 11 N -0.597 5.597 12 C 0.094 3.906 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.110 4.110 16 C 0.138 3.862 17 H 0.047 0.953 18 C 0.158 3.842 19 N -0.617 5.617 20 C 0.123 3.877 21 C -0.367 4.367 22 H 0.043 0.957 23 C -0.065 4.065 24 N -0.920 5.920 25 Si 1.106 2.894 26 H -0.294 1.294 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.178 0.822 33 H 0.425 0.575 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.018 0.982 44 H 0.079 0.921 45 H -0.014 1.014 46 H 0.052 0.948 47 H 0.039 0.961 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 14.976 -12.150 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.006 3.994 3 C -0.200 4.200 4 C 0.150 3.850 5 O -0.295 6.295 6 N -0.242 5.242 7 C 0.003 3.997 8 C -0.205 4.205 9 C 0.339 3.661 10 O -0.427 6.427 11 N -0.330 5.330 12 C -0.028 4.028 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.033 3.967 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.343 5.343 20 C -0.022 4.022 21 C -0.497 4.497 22 H 0.061 0.939 23 C -0.264 4.264 24 N -0.559 5.559 25 Si 0.931 3.069 26 H -0.220 1.220 27 H -0.199 1.199 28 H -0.202 1.202 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.288 0.712 34 H 0.191 0.809 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.005 0.995 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.162 14.509 -11.022 20.864 hybrid contribution -2.232 0.098 -0.403 2.270 sum 7.931 14.607 -11.425 20.169 Atomic orbital electron populations 1.20871 0.88941 1.03563 1.03763 1.20393 0.97569 0.90865 0.90553 1.22112 0.93413 0.99729 1.04728 1.19485 0.87551 0.85355 0.92613 1.84659 1.75657 1.33054 1.36158 1.67232 1.42212 0.98580 1.16202 1.22762 0.89520 0.95789 0.91632 1.20882 0.95970 0.93818 1.09823 1.18509 0.82410 0.83933 0.81253 1.90974 1.35277 1.78239 1.38201 1.48291 1.36495 1.17799 1.30402 1.22210 0.89348 1.03012 0.88223 1.21869 1.01317 0.97177 0.95829 1.21535 0.97129 0.97612 0.98923 1.21804 0.98373 1.01364 0.93287 1.21829 0.93569 0.83820 0.97444 0.93493 1.21428 0.90895 0.84742 0.99717 1.44302 1.26538 1.11307 1.52105 1.21194 0.88333 0.99313 0.93342 1.19980 1.44483 0.87587 0.97635 0.93946 1.27237 1.03270 1.03115 0.92799 1.70847 1.31678 1.16167 1.37194 0.83013 0.75235 0.73506 0.75187 1.22015 1.19871 1.20166 0.90044 0.87482 0.93257 0.80491 0.71244 0.80893 0.88750 0.89862 0.91985 0.87706 0.90003 0.91727 0.91719 0.93061 0.96401 0.90289 0.99548 0.92992 0.94189 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.31 71.24 0.66 -2.09 16 2 C 0.01 0.35 5.94 -19.43 -0.12 0.24 16 3 C -0.18 -3.40 9.74 22.43 0.22 -3.18 16 4 C 0.33 6.79 7.74 84.82 0.66 7.44 16 5 O -0.48 -7.62 13.55 -88.01 -1.19 -8.81 16 6 N -0.52 -12.84 10.37 -307.79 -3.19 -16.03 16 7 C 0.16 4.10 8.62 85.04 0.73 4.84 16 8 C -0.20 -5.79 4.87 -20.00 -0.10 -5.88 16 9 C 0.55 20.50 6.05 86.72 0.52 21.02 16 10 O -0.55 -26.20 11.63 -4.00 -0.05 -26.25 16 11 N -0.60 -20.24 2.97 -798.65 -2.38 -22.61 16 12 C 0.09 2.20 5.56 86.36 0.48 2.68 16 13 C -0.12 -2.45 6.09 30.67 0.19 -2.27 16 14 C -0.11 -2.69 5.88 30.63 0.18 -2.51 16 15 C -0.11 -3.61 4.04 30.69 0.12 -3.49 16 16 C 0.14 5.62 3.19 44.98 0.14 5.76 16 17 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.16 7.99 2.86 86.38 0.25 8.24 16 19 N -0.62 -32.84 2.24 -726.93 -1.63 -34.47 16 20 C 0.12 5.58 9.74 127.77 1.24 6.82 16 21 C -0.37 -21.39 9.36 84.03 0.79 -20.60 16 22 H 0.04 2.47 7.95 -2.92 -0.02 2.45 16 23 C -0.07 -3.87 4.86 84.86 0.41 -3.46 16 24 N -0.92 -59.59 12.24 21.65 0.26 -59.33 16 25 Si 1.11 52.82 29.99 68.60 2.06 54.88 16 26 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 31 H 0.05 1.47 6.83 -2.39 -0.02 1.45 16 32 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.43 2.40 9.06 -74.06 -0.67 1.73 16 34 H 0.17 3.96 7.41 -2.91 -0.02 3.94 16 35 H 0.09 1.98 4.77 -2.39 -0.01 1.97 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 2.34 6.79 -2.39 -0.02 2.32 16 42 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16 43 H 0.02 0.92 7.13 -2.39 -0.02 0.90 16 44 H 0.08 4.71 3.55 -2.39 -0.01 4.70 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.05 2.03 6.43 -2.39 -0.02 2.02 16 47 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 48 H 0.25 17.14 7.21 -92.71 -0.67 16.47 16 Total: -1.00 -80.05 372.53 0.69 -79.36 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.42 Total: 19.68 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.39 Total: 13.57 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -6.93 Total: -132.44 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.24 Total: -35.06 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.06 Total: 54.88 kcal Total: -80.05 0.69 -79.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158461379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.654 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds