Wall clock time and date at job start Tue Mar 31 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35920 * 116.99698 * 2 1 4 4 C 1.38855 * 120.40694 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99738 * 180.25481 * 4 3 2 6 6 C 1.31686 * 121.94220 * 359.43271 * 5 4 3 7 7 C 1.39527 * 120.68822 * 0.56242 * 6 5 4 8 8 C 1.47860 * 120.52663 * 179.70533 * 7 6 5 9 9 O 1.21552 * 119.99827 * 186.20962 * 8 7 6 10 10 N 1.34771 * 120.00042 * 6.21021 * 8 7 6 11 11 C 1.46503 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47155 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.46987 * 182.33627 * 12 11 10 14 14 C 1.52995 * 115.55053 * 279.52771 * 13 12 11 15 15 N 1.46501 * 109.47227 * 295.20360 * 14 13 12 16 16 C 1.36934 * 119.99933 * 182.63365 * 15 14 13 17 17 H 1.08000 * 120.00278 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00112 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47493 * 89.99527 * 20 18 16 22 22 H 1.48500 * 109.47040 * 209.99870 * 20 18 16 23 23 H 1.48504 * 109.46891 * 329.99622 * 20 18 16 24 24 C 1.52997 * 117.49357 * 133.81675 * 13 12 11 25 25 C 1.52992 * 60.00113 * 252.51388 * 24 13 12 26 26 C 1.38846 * 120.40288 * 179.97438 * 3 2 1 27 27 C 1.50693 * 120.88175 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47210 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99991 * 1 2 3 30 30 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.49823 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.65430 * 180.29626 * 6 5 4 33 33 H 0.96998 * 120.00286 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47580 * 300.00365 * 11 10 8 35 35 H 1.09006 * 109.46519 * 60.00204 * 11 10 8 36 36 H 1.08998 * 109.47432 * 302.33865 * 12 11 10 37 37 H 1.08998 * 109.46762 * 62.34261 * 12 11 10 38 38 H 1.09000 * 109.47107 * 55.20275 * 14 13 12 39 39 H 1.09004 * 109.46973 * 175.19946 * 14 13 12 40 40 H 0.96996 * 120.00140 * 2.63423 * 15 14 13 41 41 H 0.96998 * 119.99791 * 180.02562 * 19 18 16 42 42 H 1.08997 * 117.50232 * 0.02562 * 24 13 12 43 43 H 1.09004 * 117.49329 * 145.02339 * 24 13 12 44 44 H 1.09004 * 117.49812 * 252.51333 * 25 24 13 45 45 H 1.08997 * 117.49977 * 107.49165 * 25 24 13 46 46 H 1.09000 * 109.47150 * 96.38317 * 27 26 3 47 47 H 1.08997 * 109.47405 * 216.39003 * 27 26 3 48 48 H 1.09004 * 109.47224 * 336.38228 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0056 6 6 3.1952 3.6892 0.0008 7 6 4.0198 2.5636 0.0014 8 6 5.4910 2.7105 0.0020 9 8 6.1998 1.7295 -0.1113 10 7 6.0463 3.9320 0.1282 11 6 7.5041 4.0774 0.1293 12 6 7.8691 5.5551 0.2843 13 6 9.3899 5.7135 0.2271 14 6 10.1355 5.3978 1.5252 15 7 9.7517 6.3649 2.5565 16 6 10.3352 6.3138 3.7942 17 1 11.0787 5.5608 4.0101 18 6 9.9711 7.2299 4.7716 19 7 9.0654 8.1479 4.5085 20 14 10.7676 7.1606 6.4599 21 1 11.9851 8.0107 6.4681 22 1 9.8097 7.6579 7.4799 23 1 11.1411 5.7580 6.7738 24 6 9.9511 6.8287 -0.6573 25 6 10.0870 5.3676 -1.0902 26 6 3.4320 1.2936 0.0005 27 6 4.2809 0.0485 0.0017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2196 2.3226 -0.0014 32 1 3.6365 4.6749 0.0012 33 1 5.4808 4.7149 0.2182 34 1 7.9253 3.5097 0.9590 35 1 7.9075 3.7005 -0.8106 36 1 7.4135 6.1286 -0.5228 37 1 7.5016 5.9215 1.2429 38 1 9.8781 4.3918 1.8567 39 1 11.2099 5.4592 1.3513 40 1 9.0842 7.0415 2.3626 41 1 8.8112 8.7882 5.1913 42 1 9.2370 7.4497 -1.1980 43 1 10.8518 7.3378 -0.3143 44 1 11.0771 4.9154 -1.0320 45 1 9.4623 5.0271 -1.9159 46 1 4.5805 -0.1880 -1.0193 47 1 5.1689 0.2147 0.6116 48 1 3.7075 -0.7819 0.4137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165750284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:24 Heat of formation + Delta-G solvation = -3.062468 kcal Electronic energy + Delta-G solvation = -27929.527312 eV Core-core repulsion = 23986.085353 eV Total energy + Delta-G solvation = -3943.441960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32876 -39.70790 -38.43419 -38.07174 -35.16094 -33.92437 -33.84265 -31.56906 -30.76004 -29.68033 -28.10073 -27.92767 -25.98275 -24.58973 -23.30352 -22.73917 -22.41780 -21.71071 -20.90228 -18.96478 -18.19784 -17.76019 -17.05417 -16.68982 -16.59419 -16.40833 -15.85048 -15.66290 -15.07269 -14.57826 -14.47505 -14.43938 -14.03295 -13.85242 -13.37533 -13.24322 -13.11574 -12.99144 -12.91670 -12.64197 -12.47965 -12.33515 -12.10945 -11.90553 -11.88822 -11.43787 -11.12503 -10.96040 -10.83453 -10.58107 -10.28702 -10.12906 -9.90825 -9.81054 -9.69514 -9.55076 -9.31672 -9.05411 -8.83782 -8.82979 -6.88952 -5.75176 -3.02842 0.29214 0.87042 2.58673 2.67574 3.11605 3.44688 3.50050 3.50103 3.51517 3.97369 4.05539 4.13622 4.39277 4.42415 4.60148 4.62558 4.66849 4.80471 4.89220 5.01073 5.04004 5.08854 5.15255 5.27627 5.29676 5.43321 5.52994 5.59278 5.61266 5.67688 5.74701 5.86315 5.91175 5.91710 6.09613 6.17228 6.23005 6.26347 6.40983 6.43523 6.46985 6.54517 6.73209 6.77153 6.84542 7.36951 7.48204 7.71862 8.06641 8.44152 9.55745 10.14064 10.49667 11.47744 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002354 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.947935 B =11891.581924 C =12935.094853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.103 3.897 7 C -0.153 4.153 8 C 0.562 3.438 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.125 3.875 12 C -0.092 4.092 13 C -0.119 4.119 14 C 0.187 3.813 15 N -0.728 5.728 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.163 4.163 25 C -0.178 4.178 26 C -0.011 4.011 27 C -0.114 4.114 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.400 0.600 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -13.019 -14.490 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.057 4.057 7 C -0.158 4.158 8 C 0.348 3.652 9 O -0.404 6.404 10 N -0.370 5.370 11 C 0.002 3.998 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.200 4.200 25 C -0.215 4.215 26 C -0.020 4.020 27 C -0.170 4.170 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.413 -13.247 -14.426 25.554 hybrid contribution 0.073 0.190 0.986 1.007 sum -16.340 -13.057 -13.440 24.862 Atomic orbital electron populations 1.23160 0.77865 1.04578 1.01627 1.86101 1.21601 1.25477 1.88580 1.19768 0.92334 0.86090 1.00076 1.23086 1.00741 0.87073 1.00829 1.67539 1.11871 1.25955 1.11137 1.22877 0.88752 0.98156 0.95884 1.20760 0.94884 0.93822 1.06359 1.17869 0.86628 0.83574 0.77153 1.90751 1.63070 1.37306 1.49250 1.45964 1.08882 1.08324 1.73817 1.21441 0.78062 0.97637 1.02659 1.21271 0.94009 0.94305 1.03432 1.21543 0.93625 1.04081 0.92750 1.20183 0.94988 0.93215 0.85621 1.42291 1.49355 1.35990 1.09543 1.19231 1.17070 1.11735 0.88789 0.91270 1.24717 0.99605 0.98319 0.98380 1.69655 1.34663 1.20115 1.33810 0.86204 0.78390 0.77422 0.84287 1.21782 1.21809 1.20796 1.22960 1.03263 0.91042 1.02760 1.22981 1.01934 0.99025 0.97583 1.19854 0.90801 0.95966 0.95414 1.20926 0.99595 0.92489 1.03979 0.92274 0.92322 0.87709 0.82078 0.81996 0.76477 0.90612 0.91319 0.91799 0.89435 0.96031 0.96094 0.78163 0.93587 0.89324 0.88583 0.88937 0.89255 0.90173 0.88238 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.69 9.57 -19.49 -0.19 -2.87 16 3 C 0.06 0.66 6.68 -39.13 -0.26 0.40 16 4 C 0.04 0.38 10.21 -17.30 -0.18 0.20 16 5 N -0.46 -5.02 10.34 -12.80 -0.13 -5.16 16 6 C 0.10 1.08 10.69 -17.13 -0.18 0.90 16 7 C -0.15 -1.81 5.89 -104.84 -0.62 -2.42 16 8 C 0.56 7.46 7.72 -12.32 -0.10 7.36 16 9 O -0.53 -8.36 13.51 5.32 0.07 -8.29 16 10 N -0.72 -8.51 5.51 -61.24 -0.34 -8.85 16 11 C 0.12 1.66 5.59 -4.04 -0.02 1.64 16 12 C -0.09 -1.28 5.21 -26.73 -0.14 -1.42 16 13 C -0.12 -1.85 1.54 -154.51 -0.24 -2.09 16 14 C 0.19 3.74 6.10 -4.04 -0.02 3.72 16 15 N -0.73 -18.07 5.38 -59.91 -0.32 -18.40 16 16 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.16 -2.36 9.90 -26.74 -0.26 -2.62 16 25 C -0.18 -2.31 9.47 -26.74 -0.25 -2.56 16 26 C -0.01 -0.13 5.97 -103.76 -0.62 -0.75 16 27 C -0.11 -1.29 8.69 36.00 0.31 -0.98 16 28 H 0.06 0.21 7.68 -51.93 -0.40 -0.19 16 29 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.16 1.02 6.30 -52.49 -0.33 0.69 16 32 H 0.16 1.30 6.46 -52.49 -0.34 0.96 16 33 H 0.40 3.78 6.57 -40.82 -0.27 3.51 16 34 H 0.08 1.18 7.85 -51.93 -0.41 0.78 16 35 H 0.07 0.90 7.58 -51.93 -0.39 0.50 16 36 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 37 H 0.09 1.42 7.43 -51.93 -0.39 1.04 16 38 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 39 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.38 9.97 7.14 -40.82 -0.29 9.68 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 43 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.10 1.30 5.96 -51.93 -0.31 0.99 16 48 H 0.07 0.69 7.44 -51.93 -0.39 0.30 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -33.55 393.89 -8.32 -41.88 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.22 Total: 10.35 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.84 Total: -4.81 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.07 Total: -59.68 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.11 Total: -11.16 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.55 -8.32 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165750284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.813 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds