Wall clock time and date at job start Tue Mar 31 2020 17:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35920 * 116.99698 * 2 1 4 4 C 1.38855 * 120.40694 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99738 * 180.25481 * 4 3 2 6 6 C 1.31686 * 121.94220 * 359.43271 * 5 4 3 7 7 C 1.39527 * 120.68822 * 0.56242 * 6 5 4 8 8 C 1.47860 * 120.52663 * 179.70533 * 7 6 5 9 9 O 1.21552 * 119.99827 * 186.20962 * 8 7 6 10 10 N 1.34771 * 120.00042 * 6.21021 * 8 7 6 11 11 C 1.46503 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47155 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.46987 * 182.33627 * 12 11 10 14 14 C 1.52995 * 115.55053 * 279.52771 * 13 12 11 15 15 N 1.46501 * 109.47227 * 295.20360 * 14 13 12 16 16 C 1.36934 * 119.99933 * 182.63365 * 15 14 13 17 17 H 1.08000 * 120.00278 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00112 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47493 * 89.99527 * 20 18 16 22 22 H 1.48500 * 109.47040 * 209.99870 * 20 18 16 23 23 H 1.48504 * 109.46891 * 329.99622 * 20 18 16 24 24 C 1.52997 * 117.49357 * 133.81675 * 13 12 11 25 25 C 1.52992 * 60.00113 * 252.51388 * 24 13 12 26 26 C 1.38846 * 120.40288 * 179.97438 * 3 2 1 27 27 C 1.50693 * 120.88175 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47210 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99991 * 1 2 3 30 30 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.49823 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.65430 * 180.29626 * 6 5 4 33 33 H 0.96998 * 120.00286 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47580 * 300.00365 * 11 10 8 35 35 H 1.09006 * 109.46519 * 60.00204 * 11 10 8 36 36 H 1.08998 * 109.47432 * 302.33865 * 12 11 10 37 37 H 1.08998 * 109.46762 * 62.34261 * 12 11 10 38 38 H 1.09000 * 109.47107 * 55.20275 * 14 13 12 39 39 H 1.09004 * 109.46973 * 175.19946 * 14 13 12 40 40 H 0.96996 * 120.00140 * 2.63423 * 15 14 13 41 41 H 0.96998 * 119.99791 * 180.02562 * 19 18 16 42 42 H 1.08997 * 117.50232 * 0.02562 * 24 13 12 43 43 H 1.09004 * 117.49329 * 145.02339 * 24 13 12 44 44 H 1.09004 * 117.49812 * 252.51333 * 25 24 13 45 45 H 1.08997 * 117.49977 * 107.49165 * 25 24 13 46 46 H 1.09000 * 109.47150 * 96.38317 * 27 26 3 47 47 H 1.08997 * 109.47405 * 216.39003 * 27 26 3 48 48 H 1.09004 * 109.47224 * 336.38228 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0056 6 6 3.1952 3.6892 0.0008 7 6 4.0198 2.5636 0.0014 8 6 5.4910 2.7105 0.0020 9 8 6.1998 1.7295 -0.1113 10 7 6.0463 3.9320 0.1282 11 6 7.5041 4.0774 0.1293 12 6 7.8691 5.5551 0.2843 13 6 9.3899 5.7135 0.2271 14 6 10.1355 5.3978 1.5252 15 7 9.7517 6.3649 2.5565 16 6 10.3352 6.3138 3.7942 17 1 11.0787 5.5608 4.0101 18 6 9.9711 7.2299 4.7716 19 7 9.0654 8.1479 4.5085 20 14 10.7676 7.1606 6.4599 21 1 11.9851 8.0107 6.4681 22 1 9.8097 7.6579 7.4799 23 1 11.1411 5.7580 6.7738 24 6 9.9511 6.8287 -0.6573 25 6 10.0870 5.3676 -1.0902 26 6 3.4320 1.2936 0.0005 27 6 4.2809 0.0485 0.0017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2196 2.3226 -0.0014 32 1 3.6365 4.6749 0.0012 33 1 5.4808 4.7149 0.2182 34 1 7.9253 3.5097 0.9590 35 1 7.9075 3.7005 -0.8106 36 1 7.4135 6.1286 -0.5228 37 1 7.5016 5.9215 1.2429 38 1 9.8781 4.3918 1.8567 39 1 11.2099 5.4592 1.3513 40 1 9.0842 7.0415 2.3626 41 1 8.8112 8.7882 5.1913 42 1 9.2370 7.4497 -1.1980 43 1 10.8518 7.3378 -0.3143 44 1 11.0771 4.9154 -1.0320 45 1 9.4623 5.0271 -1.9159 46 1 4.5805 -0.1880 -1.0193 47 1 5.1689 0.2147 0.6116 48 1 3.7075 -0.7819 0.4137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165750284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:23 Heat of formation + Delta-G solvation = -25.746381 kcal Electronic energy + Delta-G solvation = -27930.510961 eV Core-core repulsion = 23986.085353 eV Total energy + Delta-G solvation = -3944.425608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13205 -40.64721 -39.55349 -38.91919 -36.29389 -35.78533 -34.71767 -32.77097 -32.45355 -30.66620 -28.86940 -28.48917 -27.78491 -25.55070 -24.61344 -24.25477 -23.33369 -22.82094 -21.87869 -20.11452 -19.33685 -18.90909 -18.53550 -17.48840 -17.38073 -17.07909 -16.93524 -16.78062 -16.53265 -16.08180 -15.66513 -15.23202 -15.17312 -15.04123 -14.81959 -14.51472 -14.21894 -13.97805 -13.88546 -13.82987 -13.76823 -13.19389 -13.12303 -12.99509 -12.79223 -12.73789 -12.52662 -12.37545 -12.25478 -12.13539 -11.92449 -11.79845 -11.23405 -11.10122 -10.88069 -10.70399 -10.58064 -10.44606 -10.08675 -9.54877 -8.95959 -7.94184 -5.21284 -0.53861 0.07018 1.46649 1.47740 1.56157 1.70245 1.86077 2.29815 2.54797 2.65893 2.91672 3.25128 3.38958 3.39927 3.59798 3.61966 3.85098 3.86114 3.96556 4.01929 4.08439 4.08931 4.27341 4.35130 4.39783 4.45086 4.50844 4.52739 4.61627 4.66917 4.70783 4.76872 4.86609 4.93971 4.98043 5.02695 5.10612 5.12151 5.20628 5.29283 5.34349 5.36439 5.39544 5.44651 5.49837 6.12237 6.28580 6.41579 6.70123 7.07869 7.35748 8.12490 8.38097 9.29084 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002354 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.947935 B =11891.581924 C =12935.094853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.045 3.955 5 N -0.470 5.470 6 C 0.102 3.898 7 C -0.165 4.165 8 C 0.561 3.439 9 O -0.559 6.559 10 N -0.709 5.709 11 C 0.135 3.865 12 C -0.079 4.079 13 C -0.139 4.139 14 C 0.187 3.813 15 N -0.736 5.736 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.073 4.073 19 N -0.965 5.965 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.273 1.273 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.033 4.033 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.194 0.806 32 H 0.183 0.817 33 H 0.412 0.588 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.012 -13.292 -15.641 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.112 4.112 5 N -0.180 5.180 6 C -0.057 4.057 7 C -0.170 4.170 8 C 0.348 3.652 9 O -0.439 6.439 10 N -0.361 5.361 11 C 0.011 3.989 12 C -0.117 4.117 13 C -0.139 4.139 14 C 0.060 3.940 15 N -0.378 5.378 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.265 4.265 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.198 1.198 24 C -0.201 4.201 25 C -0.187 4.187 26 C -0.042 4.042 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.210 0.790 32 H 0.200 0.800 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.819 -13.530 -15.596 27.273 hybrid contribution 0.455 0.182 1.310 1.399 sum -17.364 -13.348 -14.286 26.149 Atomic orbital electron populations 1.23514 0.75550 1.06358 1.02871 1.86095 1.23984 1.24824 1.88258 1.19767 0.91823 0.87000 0.99487 1.23588 1.02167 0.86310 0.99115 1.67621 1.11911 1.26708 1.11711 1.23161 0.88710 0.98596 0.95200 1.20663 0.93913 0.94545 1.07871 1.18142 0.87292 0.83338 0.76461 1.90735 1.63934 1.38339 1.50861 1.45849 1.08459 1.08602 1.73219 1.21238 0.78816 0.96958 1.01861 1.21124 0.92927 0.94656 1.02981 1.21387 0.94360 1.06473 0.91729 1.20249 0.95214 0.91681 0.86829 1.42438 1.48967 1.36624 1.09804 1.19597 1.16651 1.11273 0.90129 0.91212 1.25489 1.00646 0.98461 1.01934 1.69797 1.36188 1.20937 1.34691 0.85202 0.77326 0.77677 0.79943 1.21389 1.22051 1.19843 1.23001 1.02880 0.91844 1.02400 1.23064 1.01994 0.97572 0.96059 1.20025 0.91911 0.95903 0.96381 1.20789 0.98879 0.93043 1.03456 0.91135 0.90864 0.85846 0.78957 0.79990 0.74999 0.93537 0.90412 0.88858 0.92249 0.96798 0.96584 0.79045 0.94011 0.87319 0.90365 0.88647 0.86610 0.90380 0.90370 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.09 9.57 -92.65 -0.89 -5.98 16 3 C 0.07 1.28 6.68 22.56 0.15 1.43 16 4 C 0.05 0.76 10.21 84.83 0.87 1.63 16 5 N -0.47 -9.53 10.34 -194.39 -2.01 -11.54 16 6 C 0.10 2.03 10.69 85.03 0.91 2.94 16 7 C -0.16 -3.85 5.89 -20.01 -0.12 -3.96 16 8 C 0.56 14.99 7.72 86.79 0.67 15.66 16 9 O -0.56 -18.29 13.51 -3.88 -0.05 -18.34 16 10 N -0.71 -16.47 5.51 -465.95 -2.57 -19.04 16 11 C 0.13 3.54 5.59 86.38 0.48 4.02 16 12 C -0.08 -2.12 5.21 30.60 0.16 -1.96 16 13 C -0.14 -4.20 1.54 -52.18 -0.08 -4.28 16 14 C 0.19 7.57 6.10 86.38 0.53 8.10 16 15 N -0.74 -37.31 5.38 -343.45 -1.85 -39.16 16 16 C -0.24 -13.85 9.99 84.04 0.84 -13.01 16 17 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 19 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 20 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 C -0.16 -4.47 9.90 30.59 0.30 -4.17 16 25 C -0.15 -3.53 9.47 30.59 0.29 -3.24 16 26 C -0.03 -0.77 5.97 -19.31 -0.12 -0.89 16 27 C -0.11 -2.46 8.69 71.23 0.62 -1.84 16 28 H 0.07 0.31 7.68 -2.39 -0.02 0.29 16 29 H 0.07 0.27 7.67 -2.39 -0.02 0.25 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.19 1.82 6.30 -2.91 -0.02 1.80 16 32 H 0.18 2.63 6.46 -2.91 -0.02 2.61 16 33 H 0.41 7.36 6.57 -92.71 -0.61 6.75 16 34 H 0.05 1.50 7.85 -2.39 -0.02 1.48 16 35 H 0.08 1.92 7.58 -2.38 -0.02 1.90 16 36 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 37 H 0.06 1.95 7.43 -2.39 -0.02 1.93 16 38 H 0.01 0.59 7.85 -2.39 -0.02 0.58 16 39 H 0.02 0.67 8.10 -2.38 -0.02 0.65 16 40 H 0.38 20.04 7.14 -92.71 -0.66 19.38 16 41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.11 2.52 8.08 -2.39 -0.02 2.51 16 43 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.12 2.19 7.93 -2.39 -0.02 2.17 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 2.16 5.96 -2.39 -0.01 2.15 16 48 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16 Total: -1.00 -73.48 393.89 1.75 -71.73 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.28 Total: 34.27 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 7.08 Total: -2.14 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -6.14 Total: -128.27 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.94 Total: -24.32 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -73.48 1.75 -71.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165750284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.984 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds