Wall clock time and date at job start Tue Mar 31 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.40800 * 2 1 4 4 C 1.38335 * 119.45860 * 180.25375 * 3 2 1 5 5 C 1.50695 * 120.82655 * 179.77636 * 4 3 2 6 6 C 1.39985 * 118.34922 * 359.49840 * 4 3 2 7 7 C 1.47525 * 120.59679 * 180.27251 * 6 4 3 8 8 O 1.21590 * 119.99661 * 90.00521 * 7 6 4 9 9 N 1.34776 * 119.99986 * 270.00213 * 7 6 4 10 10 C 1.46501 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47474 * 175.45819 * 11 10 9 13 13 C 1.52998 * 115.54599 * 279.32702 * 12 11 10 14 14 N 1.46502 * 109.47073 * 294.94795 * 13 12 11 15 15 C 1.36942 * 120.00546 * 174.37331 * 14 13 12 16 16 H 1.08000 * 119.99354 * 0.02562 * 15 14 13 17 17 C 1.38803 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31610 * 120.00547 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99683 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47197 * 59.99614 * 19 17 15 21 21 H 1.48497 * 109.46822 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46990 * 299.99549 * 19 17 15 23 23 C 1.52998 * 117.50193 * 133.61544 * 12 11 10 24 24 C 1.52997 * 117.49955 * 64.99183 * 12 11 10 25 25 C 1.40283 * 118.80755 * 0.25241 * 6 4 3 26 26 O 1.35424 * 119.80101 * 179.97438 * 25 6 4 27 27 N 1.31876 * 119.41038 * 179.74449 * 2 1 3 28 28 H 1.09005 * 109.47234 * 270.25393 * 1 2 3 29 29 H 1.08994 * 109.47006 * 30.25856 * 1 2 3 30 30 H 1.08999 * 109.46823 * 150.25734 * 1 2 3 31 31 H 1.08003 * 120.26791 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47226 * 269.71869 * 5 4 3 33 33 H 1.08993 * 109.47432 * 149.71317 * 5 4 3 34 34 H 1.09004 * 109.46931 * 29.71315 * 5 4 3 35 35 H 0.96999 * 119.99968 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47223 * 300.00286 * 10 9 7 37 37 H 1.09003 * 109.46920 * 59.99854 * 10 9 7 38 38 H 1.09004 * 109.47319 * 295.45485 * 11 10 9 39 39 H 1.09002 * 109.47496 * 55.45260 * 11 10 9 40 40 H 1.09004 * 109.47621 * 54.94614 * 13 12 11 41 41 H 1.08994 * 109.47401 * 174.95310 * 13 12 11 42 42 H 0.97006 * 120.00295 * 354.37315 * 14 13 12 43 43 H 0.97003 * 120.00903 * 180.02562 * 18 17 15 44 44 H 1.09001 * 117.49878 * 359.97438 * 23 12 11 45 45 H 1.08997 * 117.49561 * 145.01745 * 23 12 11 46 46 H 1.09000 * 117.49750 * 214.98555 * 24 12 11 47 47 H 1.09003 * 117.49600 * 359.97438 * 24 12 11 48 48 H 0.96697 * 114.00001 * 90.00035 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0053 5 6 4.3408 2.5013 -0.0105 6 6 4.2355 -0.0248 0.0002 7 6 5.7097 -0.0813 0.0009 8 8 6.3168 -0.1001 1.0543 9 7 6.3835 -0.1121 -1.1659 10 6 7.8474 -0.1688 -1.1652 11 6 8.3576 -0.1937 -2.6073 12 6 9.8866 -0.1386 -2.6085 13 6 10.4969 1.2525 -2.4263 14 7 10.1504 2.0921 -3.5758 15 6 10.4900 3.4187 -3.5820 16 1 11.0136 3.8459 -2.7395 17 6 10.1622 4.2140 -4.6713 18 7 9.5255 3.6931 -5.6986 19 14 10.6262 6.0235 -4.6799 20 1 12.1010 6.1569 -4.5691 21 1 10.1660 6.6464 -5.9470 22 1 9.9796 6.7057 -3.5302 23 6 10.6284 -1.1227 -3.5153 24 6 10.6368 -1.3245 -1.9987 25 6 3.4758 -1.2041 0.0055 26 8 4.0992 -2.4063 0.0104 27 7 2.1546 -1.1488 0.0051 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6411 2.1376 0.0004 32 1 4.5271 2.8091 -1.0394 33 1 5.2911 2.3604 0.5043 34 1 3.7617 3.2710 0.4998 35 1 5.8991 -0.0975 -2.0062 36 1 8.2447 0.7085 -0.6547 37 1 8.1758 -1.0701 -0.6475 38 1 8.0268 -1.1113 -3.0939 39 1 7.9625 0.6667 -3.1474 40 1 10.1052 1.7046 -1.5150 41 1 11.5809 1.1669 -2.3526 42 1 9.6805 1.7083 -4.3327 43 1 9.2967 4.2487 -6.4601 44 1 10.0270 -1.8098 -4.1107 45 1 11.5512 -0.7791 -3.9824 46 1 11.5652 -1.1136 -1.4680 47 1 10.0409 -2.1437 -1.5962 48 1 4.2805 -2.7517 0.8951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166458888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:40 Heat of formation + Delta-G solvation = -17.663053 kcal Electronic energy + Delta-G solvation = -28340.884256 eV Core-core repulsion = 24396.809168 eV Total energy + Delta-G solvation = -3944.075088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19677 -39.32765 -38.20968 -37.64067 -34.84040 -34.48593 -33.91418 -32.12197 -30.78983 -30.21793 -28.46410 -27.78848 -25.96411 -24.12379 -23.16000 -22.75036 -22.05276 -21.62303 -20.64789 -18.74513 -18.71642 -17.71705 -17.43678 -17.04524 -16.28513 -15.80663 -15.41187 -15.00551 -14.89165 -14.49319 -14.41967 -14.17044 -13.82311 -13.60528 -13.42878 -13.30105 -13.19385 -12.99341 -12.72177 -12.65913 -12.29939 -12.24442 -12.15027 -11.92544 -11.90949 -11.45879 -11.12758 -10.97172 -10.83805 -10.66878 -10.36094 -10.16424 -9.91511 -9.86065 -9.68273 -9.59823 -9.32497 -9.12163 -9.05568 -8.85233 -6.90841 -5.76618 -3.04559 0.46849 0.78942 2.43949 2.98263 3.06540 3.42034 3.43205 3.47772 3.48580 4.06031 4.14162 4.22536 4.50715 4.60781 4.67709 4.88370 4.97577 5.01976 5.08007 5.10367 5.16317 5.19657 5.27890 5.32223 5.35314 5.51627 5.53461 5.58344 5.62133 5.66710 5.76291 5.79051 5.86133 5.92228 6.12809 6.15497 6.18787 6.23095 6.40081 6.44203 6.47051 6.55869 6.75483 6.84432 7.11427 7.41036 7.54204 7.69474 8.08629 8.42472 9.53994 10.12550 10.48389 11.46110 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.002864 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.236708 B = 9773.752211 C =11500.263595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.016 3.984 5 C -0.129 4.129 6 C -0.203 4.203 7 C 0.576 3.424 8 O -0.535 6.535 9 N -0.712 5.712 10 C 0.124 3.876 11 C -0.091 4.091 12 C -0.119 4.119 13 C 0.188 3.812 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.164 4.164 24 C -0.178 4.178 25 C 0.354 3.646 26 O -0.476 6.476 27 N -0.508 5.508 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.017 0.983 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 -10.015 11.647 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.207 4.207 4 C 0.008 3.992 5 C -0.185 4.185 6 C -0.210 4.210 7 C 0.360 3.640 8 O -0.413 6.413 9 N -0.361 5.361 10 C 0.002 3.998 11 C -0.129 4.129 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.201 4.201 24 C -0.215 4.215 25 C 0.174 3.826 26 O -0.284 6.284 27 N -0.228 5.228 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -15.735 -10.621 11.846 22.377 hybrid contribution 0.440 1.469 -0.307 1.564 sum -15.295 -9.153 11.539 21.233 Atomic orbital electron populations 1.20802 0.88101 1.04004 1.03500 1.21182 0.96994 0.87050 0.91816 1.21814 0.93650 0.99695 1.05491 1.20328 0.93696 0.94306 0.90870 1.20999 1.00488 0.92866 1.04179 1.20908 0.95045 0.94116 1.10892 1.17721 0.85888 0.76124 0.84247 1.90818 1.69350 1.49937 1.31159 1.46036 1.08199 1.73664 1.08238 1.21425 0.77778 1.02544 0.98079 1.21255 0.93540 1.03036 0.95057 1.21557 0.92737 0.92762 1.04951 1.20180 0.95588 0.86544 0.91662 1.42289 1.69851 1.06830 1.18163 1.19187 1.30414 0.85642 1.01660 0.91348 1.24704 1.01378 0.98098 0.96741 1.69644 1.45641 1.35220 1.07741 0.86292 0.78072 0.85308 0.76670 1.21316 1.21720 1.21319 1.22964 1.02740 1.01934 0.92500 1.22977 1.02340 0.99841 0.96358 1.18977 0.86365 0.84341 0.92868 1.84686 1.76671 1.32762 1.34248 1.67037 1.09075 1.30449 1.16216 0.89898 0.90111 0.90092 0.83691 0.89138 0.90277 0.90014 0.76343 0.90759 0.91523 0.91866 0.89426 0.95590 0.96555 0.78155 0.93532 0.89310 0.88589 0.88937 0.89234 0.73494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.00 0.37 -0.27 16 2 C 0.17 1.59 6.78 -82.53 -0.56 1.03 16 3 C -0.19 -1.65 9.41 -39.50 -0.37 -2.02 16 4 C 0.02 0.17 5.95 -103.93 -0.62 -0.45 16 5 C -0.13 -1.28 9.69 36.00 0.35 -0.93 16 6 C -0.20 -2.54 5.66 -104.69 -0.59 -3.13 16 7 C 0.58 8.20 5.42 -12.47 -0.07 8.13 16 8 O -0.54 -9.27 17.11 5.29 0.09 -9.18 16 9 N -0.71 -9.38 5.55 -61.36 -0.34 -9.72 16 10 C 0.12 1.76 5.51 -4.05 -0.02 1.73 16 11 C -0.09 -1.33 5.24 -26.73 -0.14 -1.47 16 12 C -0.12 -1.89 1.52 -154.51 -0.23 -2.13 16 13 C 0.19 3.76 6.10 -4.04 -0.02 3.74 16 14 N -0.73 -18.00 5.30 -59.91 -0.32 -18.32 16 15 C -0.24 -6.58 9.99 -15.06 -0.15 -6.74 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.38 5.50 -17.44 -0.10 -0.48 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.16 -2.42 9.90 -26.73 -0.26 -2.69 16 24 C -0.18 -2.38 9.57 -26.73 -0.26 -2.63 16 25 C 0.35 4.36 7.77 -16.61 -0.13 4.23 16 26 O -0.48 -5.39 13.01 -17.96 -0.23 -5.62 16 27 N -0.51 -6.03 10.28 -9.21 -0.09 -6.13 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.32 8.07 -51.93 -0.42 -0.09 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 34 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.40 4.73 8.46 -40.82 -0.35 4.39 16 36 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 37 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 38 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 39 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 40 H 0.03 0.53 7.69 -51.93 -0.40 0.14 16 41 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.38 10.00 7.46 -40.82 -0.30 9.70 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.07 7.98 -51.93 -0.41 0.65 16 48 H 0.41 2.95 9.06 45.56 0.41 3.36 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -34.24 405.49 -8.70 -42.94 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -6.80 Total: 13.82 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.81 Total: -4.06 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.03 Total: -61.24 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.14 Total: -14.80 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.24 -8.70 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166458888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.273 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds