Wall clock time and date at job start Tue Mar 31 2020 17:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.40800 * 2 1 4 4 C 1.38335 * 119.45860 * 180.25375 * 3 2 1 5 5 C 1.50695 * 120.82655 * 179.77636 * 4 3 2 6 6 C 1.39985 * 118.34922 * 359.49840 * 4 3 2 7 7 C 1.47525 * 120.59679 * 180.27251 * 6 4 3 8 8 O 1.21590 * 119.99661 * 90.00521 * 7 6 4 9 9 N 1.34776 * 119.99986 * 270.00213 * 7 6 4 10 10 C 1.46501 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47474 * 175.45819 * 11 10 9 13 13 C 1.52998 * 115.54599 * 279.32702 * 12 11 10 14 14 N 1.46502 * 109.47073 * 294.94795 * 13 12 11 15 15 C 1.36942 * 120.00546 * 174.37331 * 14 13 12 16 16 H 1.08000 * 119.99354 * 0.02562 * 15 14 13 17 17 C 1.38803 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31610 * 120.00547 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99683 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47197 * 59.99614 * 19 17 15 21 21 H 1.48497 * 109.46822 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46990 * 299.99549 * 19 17 15 23 23 C 1.52998 * 117.50193 * 133.61544 * 12 11 10 24 24 C 1.52997 * 117.49955 * 64.99183 * 12 11 10 25 25 C 1.40283 * 118.80755 * 0.25241 * 6 4 3 26 26 O 1.35424 * 119.80101 * 179.97438 * 25 6 4 27 27 N 1.31876 * 119.41038 * 179.74449 * 2 1 3 28 28 H 1.09005 * 109.47234 * 270.25393 * 1 2 3 29 29 H 1.08994 * 109.47006 * 30.25856 * 1 2 3 30 30 H 1.08999 * 109.46823 * 150.25734 * 1 2 3 31 31 H 1.08003 * 120.26791 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47226 * 269.71869 * 5 4 3 33 33 H 1.08993 * 109.47432 * 149.71317 * 5 4 3 34 34 H 1.09004 * 109.46931 * 29.71315 * 5 4 3 35 35 H 0.96999 * 119.99968 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47223 * 300.00286 * 10 9 7 37 37 H 1.09003 * 109.46920 * 59.99854 * 10 9 7 38 38 H 1.09004 * 109.47319 * 295.45485 * 11 10 9 39 39 H 1.09002 * 109.47496 * 55.45260 * 11 10 9 40 40 H 1.09004 * 109.47621 * 54.94614 * 13 12 11 41 41 H 1.08994 * 109.47401 * 174.95310 * 13 12 11 42 42 H 0.97006 * 120.00295 * 354.37315 * 14 13 12 43 43 H 0.97003 * 120.00903 * 180.02562 * 18 17 15 44 44 H 1.09001 * 117.49878 * 359.97438 * 23 12 11 45 45 H 1.08997 * 117.49561 * 145.01745 * 23 12 11 46 46 H 1.09000 * 117.49750 * 214.98555 * 24 12 11 47 47 H 1.09003 * 117.49600 * 359.97438 * 24 12 11 48 48 H 0.96697 * 114.00001 * 90.00035 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0053 5 6 4.3408 2.5013 -0.0105 6 6 4.2355 -0.0248 0.0002 7 6 5.7097 -0.0813 0.0009 8 8 6.3168 -0.1001 1.0543 9 7 6.3835 -0.1121 -1.1659 10 6 7.8474 -0.1688 -1.1652 11 6 8.3576 -0.1937 -2.6073 12 6 9.8866 -0.1386 -2.6085 13 6 10.4969 1.2525 -2.4263 14 7 10.1504 2.0921 -3.5758 15 6 10.4900 3.4187 -3.5820 16 1 11.0136 3.8459 -2.7395 17 6 10.1622 4.2140 -4.6713 18 7 9.5255 3.6931 -5.6986 19 14 10.6262 6.0235 -4.6799 20 1 12.1010 6.1569 -4.5691 21 1 10.1660 6.6464 -5.9470 22 1 9.9796 6.7057 -3.5302 23 6 10.6284 -1.1227 -3.5153 24 6 10.6368 -1.3245 -1.9987 25 6 3.4758 -1.2041 0.0055 26 8 4.0992 -2.4063 0.0104 27 7 2.1546 -1.1488 0.0051 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6411 2.1376 0.0004 32 1 4.5271 2.8091 -1.0394 33 1 5.2911 2.3604 0.5043 34 1 3.7617 3.2710 0.4998 35 1 5.8991 -0.0975 -2.0062 36 1 8.2447 0.7085 -0.6547 37 1 8.1758 -1.0701 -0.6475 38 1 8.0268 -1.1113 -3.0939 39 1 7.9625 0.6667 -3.1474 40 1 10.1052 1.7046 -1.5150 41 1 11.5809 1.1669 -2.3526 42 1 9.6805 1.7083 -4.3327 43 1 9.2967 4.2487 -6.4601 44 1 10.0270 -1.8098 -4.1107 45 1 11.5512 -0.7791 -3.9824 46 1 11.5652 -1.1136 -1.4680 47 1 10.0409 -2.1437 -1.5962 48 1 4.2805 -2.7517 0.8951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166458888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:39 Heat of formation + Delta-G solvation = -44.081950 kcal Electronic energy + Delta-G solvation = -28342.029865 eV Core-core repulsion = 24396.809168 eV Total energy + Delta-G solvation = -3945.220698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06918 -40.41874 -39.48359 -38.45405 -36.15299 -35.73991 -35.29189 -32.86489 -32.77598 -31.33158 -29.34490 -28.48182 -27.77483 -25.16088 -24.61551 -24.14383 -23.10875 -22.64673 -21.66056 -20.08814 -19.53691 -19.12895 -18.67377 -18.28680 -17.39529 -16.81365 -16.68404 -16.45978 -16.07875 -15.77317 -15.49376 -15.24929 -15.05921 -14.76688 -14.73115 -14.32630 -14.22526 -13.99511 -13.92375 -13.82112 -13.27657 -13.20111 -13.03987 -13.00904 -12.86326 -12.76005 -12.65981 -12.59271 -12.29440 -12.19116 -11.93727 -11.87912 -11.45213 -11.08562 -10.90523 -10.69695 -10.59605 -10.50822 -10.21397 -9.89865 -8.96966 -7.93768 -5.21559 -0.33608 -0.00782 1.33830 1.46826 1.49199 1.55421 2.00710 2.25861 2.54651 2.59992 2.88465 3.35815 3.39046 3.50673 3.57814 3.80562 3.84690 3.94632 3.96163 4.05822 4.15440 4.21641 4.26944 4.38725 4.46935 4.47935 4.53845 4.59641 4.62150 4.80727 4.83058 4.90732 4.93099 4.96254 4.99020 5.06998 5.08666 5.14994 5.16282 5.24871 5.31609 5.33361 5.37097 5.48411 5.49247 6.28123 6.32907 6.38410 6.76073 6.99219 7.35439 8.11480 8.37442 9.29196 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.002864 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.236708 B = 9773.752211 C =11500.263595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.177 4.177 4 C 0.007 3.993 5 C -0.126 4.126 6 C -0.224 4.224 7 C 0.581 3.419 8 O -0.572 6.572 9 N -0.706 5.706 10 C 0.134 3.866 11 C -0.077 4.077 12 C -0.138 4.138 13 C 0.188 3.812 14 N -0.735 5.735 15 C -0.246 4.246 16 H 0.070 0.930 17 C -0.070 4.070 18 N -0.966 5.966 19 Si 0.969 3.031 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.279 1.279 23 C -0.165 4.165 24 C -0.150 4.150 25 C 0.345 3.655 26 O -0.487 6.487 27 N -0.528 5.528 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.410 0.590 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.013 0.987 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.284 -10.051 12.197 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.197 4.197 4 C 0.000 4.000 5 C -0.182 4.182 6 C -0.231 4.231 7 C 0.366 3.634 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.011 3.989 11 C -0.115 4.115 12 C -0.139 4.139 13 C 0.062 3.938 14 N -0.378 5.378 15 C -0.378 4.378 16 H 0.088 0.912 17 C -0.263 4.263 18 N -0.616 5.616 19 Si 0.798 3.202 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.205 1.205 23 C -0.202 4.202 24 C -0.187 4.187 25 C 0.166 3.834 26 O -0.297 6.297 27 N -0.248 5.248 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.198 0.802 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.131 0.869 48 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -17.172 -10.676 12.419 23.730 hybrid contribution 0.870 1.454 -0.429 1.748 sum -16.302 -9.222 11.990 22.239 Atomic orbital electron populations 1.20934 0.85401 1.05066 1.04751 1.21883 0.98728 0.86643 0.90177 1.22170 0.92746 1.01008 1.03757 1.20533 0.94780 0.93785 0.90945 1.20990 0.99647 0.93435 1.04134 1.20830 0.93774 0.95232 1.13222 1.17985 0.86722 0.74986 0.83684 1.90784 1.70365 1.51727 1.32362 1.45994 1.07892 1.73109 1.08528 1.21256 0.78272 1.01755 0.97630 1.21092 0.92620 1.02833 0.94929 1.21392 0.93476 0.91256 1.07784 1.20233 0.95457 0.88432 0.89701 1.42427 1.69627 1.06537 1.19168 1.19556 1.29627 0.87092 1.01524 0.91218 1.25475 1.02016 1.02186 0.96629 1.69793 1.47102 1.36472 1.08259 0.85278 0.77886 0.80457 0.76542 1.20688 1.21962 1.20476 1.23005 1.02048 1.01477 0.93650 1.23061 1.02020 0.98313 0.95346 1.19064 0.86740 0.84382 0.93226 1.84632 1.76756 1.32668 1.35649 1.67130 1.08738 1.31807 1.17158 0.88378 0.87574 0.90496 0.80158 0.89173 0.92877 0.87339 0.75486 0.93162 0.90699 0.89630 0.92176 0.96294 0.96899 0.79146 0.93997 0.87574 0.90045 0.88403 0.86865 0.71930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.16 71.24 0.72 -0.21 16 2 C 0.16 2.76 6.78 42.58 0.29 3.05 16 3 C -0.18 -2.71 9.41 22.32 0.21 -2.50 16 4 C 0.01 0.15 5.95 -19.42 -0.12 0.04 16 5 C -0.13 -2.42 9.69 71.23 0.69 -1.73 16 6 C -0.22 -5.62 5.66 -19.91 -0.11 -5.73 16 7 C 0.58 16.91 5.42 86.69 0.47 17.38 16 8 O -0.57 -20.45 17.11 -4.00 -0.07 -20.51 16 9 N -0.71 -18.89 5.55 -466.29 -2.59 -21.47 16 10 C 0.13 3.80 5.51 86.38 0.48 4.28 16 11 C -0.08 -2.22 5.24 30.59 0.16 -2.06 16 12 C -0.14 -4.32 1.52 -52.18 -0.08 -4.40 16 13 C 0.19 7.66 6.10 86.38 0.53 8.19 16 14 N -0.73 -37.18 5.30 -343.46 -1.82 -39.00 16 15 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 16 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 18 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 19 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C -0.16 -4.64 9.90 30.59 0.30 -4.33 16 24 C -0.15 -3.70 9.57 30.59 0.29 -3.41 16 25 C 0.35 8.45 7.77 85.13 0.66 9.12 16 26 O -0.49 -11.06 13.01 -87.19 -1.13 -12.19 16 27 N -0.53 -12.06 10.28 -296.06 -3.04 -15.10 16 28 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.11 0.43 8.07 -2.39 -0.02 0.41 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.30 7.19 -2.39 -0.02 1.28 16 34 H 0.11 1.45 8.10 -2.38 -0.02 1.43 16 35 H 0.41 9.74 8.46 -92.71 -0.78 8.95 16 36 H 0.05 1.67 7.69 -2.39 -0.02 1.65 16 37 H 0.07 2.01 7.80 -2.39 -0.02 2.00 16 38 H 0.09 2.09 7.94 -2.39 -0.02 2.07 16 39 H 0.06 2.08 7.64 -2.39 -0.02 2.06 16 40 H 0.02 0.80 7.69 -2.38 -0.02 0.78 16 41 H 0.01 0.54 8.09 -2.39 -0.02 0.52 16 42 H 0.38 20.09 7.46 -92.70 -0.69 19.40 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.11 2.62 8.08 -2.39 -0.02 2.60 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.11 2.32 7.98 -2.39 -0.02 2.30 16 48 H 0.42 6.21 9.06 -74.06 -0.67 5.54 16 Total: -1.00 -75.00 405.49 -1.69 -76.69 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -1.15 Total: 40.50 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.80 Total: 1.14 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.17 Total: -133.67 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.20 Total: -32.71 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.00 -1.69 -76.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166458888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.607 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds