Wall clock time and date at job start Tue Mar 31 2020 18:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40202 * 120.36812 * 2 1 4 4 C 1.35346 * 119.94561 * 179.97438 * 3 2 1 5 5 N 1.35759 * 120.70665 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62380 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47214 * 270.01638 * 6 5 4 8 8 O 1.21278 * 119.99944 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00184 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47076 * 175.45576 * 11 10 9 13 13 C 1.53003 * 115.54918 * 279.32530 * 12 11 10 14 14 N 1.46498 * 109.47200 * 294.95311 * 13 12 11 15 15 C 1.36937 * 119.99965 * 174.37299 * 14 13 12 16 16 H 1.07996 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99703 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00387 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99647 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47307 * 90.00246 * 19 17 15 21 21 H 1.48497 * 109.46901 * 210.00327 * 19 17 15 22 22 H 1.48500 * 109.47182 * 329.99988 * 19 17 15 23 23 C 1.52997 * 117.49664 * 133.61730 * 12 11 10 24 24 C 1.52994 * 59.99976 * 252.50905 * 23 12 11 25 25 C 1.34660 * 120.75019 * 359.97438 * 5 4 3 26 26 O 1.22059 * 119.98721 * 179.97438 * 25 5 4 27 27 C 1.36407 * 120.36868 * 180.26662 * 2 1 3 28 28 H 1.08998 * 109.46586 * 89.99832 * 1 2 3 29 29 H 1.09000 * 109.46941 * 209.99701 * 1 2 3 30 30 H 1.08998 * 109.47315 * 330.00121 * 1 2 3 31 31 H 1.07992 * 120.02484 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.64783 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47510 * 30.02550 * 6 5 4 34 34 H 1.09006 * 109.46708 * 150.02102 * 6 5 4 35 35 H 0.97002 * 120.00054 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.46878 * 299.99807 * 10 9 7 37 37 H 1.09001 * 109.46864 * 60.00450 * 10 9 7 38 38 H 1.09002 * 109.47052 * 295.45854 * 11 10 9 39 39 H 1.09001 * 109.46514 * 55.45467 * 11 10 9 40 40 H 1.08996 * 109.47084 * 54.95395 * 13 12 11 41 41 H 1.08998 * 109.46740 * 174.95360 * 13 12 11 42 42 H 0.97004 * 120.00169 * 354.36899 * 14 13 12 43 43 H 0.96997 * 120.00266 * 179.97438 * 18 17 15 44 44 H 1.09004 * 117.50145 * 0.02562 * 23 12 11 45 45 H 1.09008 * 117.49684 * 145.01863 * 23 12 11 46 46 H 1.09001 * 117.50062 * 252.50852 * 24 23 12 47 47 H 1.09003 * 117.49358 * 107.49041 * 24 23 12 48 48 H 1.07996 * 120.34815 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0274 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2211 0.0504 -1.4203 8 8 5.4330 0.0421 -2.3421 9 7 7.5460 0.0652 -1.6665 10 6 8.0343 0.0718 -3.0477 11 6 9.5643 0.0893 -3.0477 12 6 10.0755 -0.0181 -4.4858 13 6 10.1007 -1.4305 -5.0734 14 7 11.0645 -2.2498 -4.3343 15 6 11.1771 -3.5871 -4.6064 16 1 10.5552 -4.0380 -5.3655 17 6 12.0907 -4.3632 -3.9065 18 7 12.8483 -3.8139 -2.9810 19 14 12.2448 -6.1874 -4.2782 20 1 13.2615 -6.3919 -5.3410 21 1 12.6613 -6.9095 -3.0492 22 1 10.9341 -6.7110 -4.7397 23 6 11.1827 0.9464 -4.9158 24 6 9.7570 1.1372 -5.4369 25 6 3.6017 -1.1508 0.0005 26 8 4.2312 -2.1965 0.0001 27 6 2.1966 -1.1769 -0.0055 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6823 2.1486 -0.0004 32 1 4.1104 2.1344 0.0001 33 1 6.0719 0.9381 0.5148 34 1 6.0923 -0.8418 0.5141 35 1 8.1763 0.0716 -0.9292 36 1 7.6808 -0.8217 -3.5623 37 1 7.6613 0.9583 -3.5607 38 1 9.9170 1.0210 -2.6053 39 1 9.9372 -0.7534 -2.4656 40 1 9.1089 -1.8752 -4.9931 41 1 10.3936 -1.3825 -6.1222 42 1 11.6229 -1.8449 -3.6523 43 1 13.4864 -4.3563 -2.4916 44 1 11.5472 1.6571 -4.1740 45 1 11.9295 0.5746 -5.6174 46 1 9.5657 0.8911 -6.4814 47 1 9.1832 1.9738 -5.0382 48 1 1.6684 -2.1188 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167356426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:30 Heat of formation + Delta-G solvation = -32.016245 kcal Electronic energy + Delta-G solvation = -27897.494348 eV Core-core repulsion = 23952.796858 eV Total energy + Delta-G solvation = -3944.697490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.53217 -40.64183 -39.52375 -38.13036 -36.39944 -36.06941 -35.75567 -32.80977 -32.02908 -30.98772 -30.23578 -28.06861 -27.59855 -24.71976 -24.66218 -24.53849 -23.07336 -22.59569 -21.78859 -20.07052 -19.11294 -18.64849 -18.54700 -18.40735 -17.07780 -16.93067 -16.83739 -16.63274 -16.28884 -16.14134 -15.68513 -15.23799 -15.16508 -15.03985 -14.88753 -14.72531 -14.31094 -14.18125 -13.86722 -13.59544 -13.35110 -13.20921 -13.06309 -13.02216 -12.88347 -12.82122 -12.58409 -12.46293 -12.28588 -12.17958 -11.96803 -11.87030 -11.34516 -11.13043 -11.10067 -10.92640 -10.66093 -10.53067 -10.20057 -9.00501 -8.99756 -7.98158 -5.25417 -0.12737 0.91000 1.39749 1.43165 1.44622 1.47272 1.52976 2.13461 2.51229 2.68420 2.88975 3.34553 3.54940 3.65847 3.73456 3.81848 3.84180 3.87844 3.96650 4.06005 4.07903 4.16396 4.22790 4.33543 4.37654 4.41143 4.47009 4.61279 4.78790 4.82777 4.83403 4.88823 4.91472 4.94221 5.07706 5.09831 5.14141 5.23991 5.25211 5.33812 5.35440 5.37406 5.45569 5.48561 5.66525 6.04631 6.24771 6.39187 6.95739 7.07900 7.31956 8.07718 8.34237 9.24886 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.002392 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.848876 B =11703.520386 C =13205.763631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.231 4.231 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.072 3.928 7 C 0.496 3.504 8 O -0.579 6.579 9 N -0.711 5.711 10 C 0.135 3.865 11 C -0.076 4.076 12 C -0.143 4.143 13 C 0.186 3.814 14 N -0.734 5.734 15 C -0.248 4.248 16 H 0.067 0.933 17 C -0.071 4.071 18 N -0.963 5.963 19 Si 0.969 3.031 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.161 4.161 24 C -0.150 4.150 25 C 0.499 3.501 26 O -0.616 6.616 27 C -0.296 4.296 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.186 0.814 32 H 0.208 0.792 33 H 0.184 0.816 34 H 0.122 0.878 35 H 0.418 0.582 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 22.215 9.744 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.253 4.253 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.053 4.053 7 C 0.282 3.718 8 O -0.458 6.458 9 N -0.363 5.363 10 C 0.011 3.989 11 C -0.114 4.114 12 C -0.144 4.144 13 C 0.060 3.940 14 N -0.377 5.377 15 C -0.380 4.380 16 H 0.085 0.915 17 C -0.263 4.263 18 N -0.614 5.614 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.202 1.202 23 C -0.198 4.198 24 C -0.187 4.187 25 C 0.305 3.695 26 O -0.504 6.504 27 C -0.317 4.317 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.203 0.797 32 H 0.225 0.775 33 H 0.201 0.799 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.210 0.790 43 H 0.061 0.939 44 H 0.131 0.869 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.136 0.864 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.169 21.395 8.996 31.414 hybrid contribution 0.999 -1.865 0.026 2.116 sum -20.170 19.531 9.022 29.490 Atomic orbital electron populations 1.21043 0.87955 1.04897 1.04042 1.20663 0.98547 0.92083 0.85661 1.21087 0.92474 0.99732 1.11973 1.22763 0.94437 0.89629 0.91618 1.45083 1.07920 1.07514 1.58708 1.22036 0.79156 1.09946 0.94172 1.21264 0.82775 0.75639 0.92137 1.90728 1.56418 1.51143 1.47550 1.45846 1.06610 1.74059 1.09806 1.21175 0.94259 1.01129 0.82304 1.21105 0.92696 1.03182 0.94377 1.21403 1.06045 0.91036 0.95870 1.20238 0.91427 0.88980 0.93378 1.42406 1.44701 1.05569 1.45012 1.19572 1.16077 0.86607 1.15699 0.91533 1.25476 0.99398 1.02165 0.99292 1.69786 1.27462 1.36235 1.27880 0.85216 0.77732 0.80507 0.76778 1.21093 1.21837 1.20208 1.23016 0.91829 1.01331 1.03631 1.23064 0.98233 0.98595 0.98802 1.17575 0.90416 0.82769 0.78789 1.90930 1.70325 1.32526 1.56614 1.21880 0.91512 1.00890 1.17437 0.89258 0.90699 0.88044 0.79675 0.77545 0.79856 0.86048 0.74464 0.95050 0.90301 0.88358 0.92517 0.97096 0.96998 0.78962 0.93912 0.86940 0.90335 0.88869 0.86353 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.03 71.24 0.71 -0.30 16 2 C 0.03 0.53 5.89 -19.81 -0.12 0.42 16 3 C -0.23 -2.42 9.71 22.08 0.21 -2.21 16 4 C 0.14 1.67 10.28 83.42 0.86 2.53 16 5 N -0.48 -10.18 2.07 -655.06 -1.36 -11.53 16 6 C 0.07 1.24 5.81 85.63 0.50 1.74 16 7 C 0.50 12.66 7.89 87.66 0.69 13.36 16 8 O -0.58 -20.44 16.43 -3.02 -0.05 -20.49 16 9 N -0.71 -16.07 5.56 -463.06 -2.57 -18.64 16 10 C 0.14 3.69 5.51 86.38 0.48 4.17 16 11 C -0.08 -2.07 5.24 30.60 0.16 -1.91 16 12 C -0.14 -4.42 1.52 -52.18 -0.08 -4.50 16 13 C 0.19 7.88 6.10 86.38 0.53 8.40 16 14 N -0.73 -38.30 5.30 -343.46 -1.82 -40.12 16 15 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 18 N -0.96 -59.44 13.06 21.65 0.28 -59.16 16 19 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 C -0.16 -4.34 9.90 30.59 0.30 -4.04 16 24 C -0.15 -3.56 9.57 30.59 0.29 -3.26 16 25 C 0.50 15.24 7.40 84.82 0.63 15.87 16 26 O -0.62 -25.17 16.64 -5.51 -0.09 -25.26 16 27 C -0.30 -7.28 9.65 22.40 0.22 -7.06 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 31 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.21 0.38 8.04 -2.91 -0.02 0.36 16 33 H 0.18 0.76 8.01 -2.39 -0.02 0.74 16 34 H 0.12 2.44 7.39 -2.38 -0.02 2.42 16 35 H 0.42 6.75 8.47 -92.71 -0.79 5.96 16 36 H 0.03 1.12 7.69 -2.39 -0.02 1.10 16 37 H 0.08 1.95 7.80 -2.39 -0.02 1.93 16 38 H 0.10 2.00 7.94 -2.39 -0.02 1.98 16 39 H 0.06 1.92 7.64 -2.39 -0.02 1.90 16 40 H 0.01 0.50 7.69 -2.39 -0.02 0.48 16 41 H 0.01 0.52 8.09 -2.39 -0.02 0.50 16 42 H 0.38 20.47 7.46 -92.71 -0.69 19.78 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.11 2.51 8.08 -2.38 -0.02 2.49 16 45 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.12 2.18 7.98 -2.39 -0.02 2.16 16 48 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -91.46 405.07 2.60 -88.86 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.50 Total: 30.48 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.69 Total: 5.88 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.47 Total: -129.45 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.14 Total: -45.76 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -91.46 2.60 -88.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167356426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.840 kcal (2) G-P(sol) polarization free energy of solvation -91.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds