Wall clock time and date at job start Tue Mar 31 2020 17:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37997 * 120.81998 * 2 1 4 4 C 1.39135 * 119.26288 * 179.71135 * 3 2 1 5 5 O 1.35493 * 119.52314 * 180.29053 * 4 3 2 6 6 N 1.32435 * 120.94756 * 0.57159 * 4 3 2 7 7 C 1.31636 * 121.79991 * 359.72425 * 6 4 3 8 8 C 1.50703 * 119.68433 * 180.02562 * 7 6 4 9 9 C 1.39564 * 120.62597 * 359.97438 * 7 6 4 10 10 C 1.47619 * 120.49668 * 180.02562 * 9 7 6 11 11 O 1.21581 * 119.99813 * 270.02403 * 10 9 7 12 12 N 1.34779 * 120.00092 * 90.02251 * 10 9 7 13 13 C 1.46501 * 119.99920 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46989 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47237 * 175.45918 * 14 13 12 16 16 C 1.53006 * 115.54915 * 279.32144 * 15 14 13 17 17 N 1.46499 * 109.46896 * 294.95274 * 16 15 14 18 18 C 1.36937 * 119.99638 * 174.37113 * 17 16 15 19 19 H 1.08001 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99830 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99880 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47081 * 89.99975 * 22 20 18 24 24 H 1.48503 * 109.47446 * 209.99738 * 22 20 18 25 25 H 1.48497 * 109.47129 * 330.00165 * 22 20 18 26 26 C 1.53000 * 117.50159 * 133.61146 * 15 14 13 27 27 C 1.52999 * 60.00207 * 252.50826 * 26 15 14 28 28 H 1.09000 * 109.46878 * 269.72679 * 1 2 3 29 29 H 1.08998 * 109.47142 * 149.72726 * 1 2 3 30 30 H 1.08995 * 109.46777 * 29.72333 * 1 2 3 31 31 H 1.08001 * 120.36748 * 359.97438 * 3 2 1 32 32 H 0.96698 * 114.00616 * 270.27694 * 5 4 3 33 33 H 1.08991 * 109.46976 * 269.97247 * 8 7 6 34 34 H 1.08993 * 109.47130 * 29.97885 * 8 7 6 35 35 H 1.09003 * 109.46630 * 149.97710 * 8 7 6 36 36 H 0.96998 * 119.99844 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47412 * 299.99744 * 13 12 10 38 38 H 1.08994 * 109.46943 * 59.99993 * 13 12 10 39 39 H 1.09007 * 109.46995 * 295.45536 * 14 13 12 40 40 H 1.08993 * 109.47567 * 55.45386 * 14 13 12 41 41 H 1.09005 * 109.46552 * 54.94794 * 16 15 14 42 42 H 1.08999 * 109.47189 * 174.95026 * 16 15 14 43 43 H 0.97003 * 120.00026 * 354.36899 * 17 16 15 44 44 H 0.97000 * 119.99875 * 179.97438 * 21 20 18 45 45 H 1.09001 * 117.49716 * 0.02562 * 26 15 14 46 46 H 1.09002 * 117.49722 * 145.01962 * 26 15 14 47 47 H 1.08999 * 117.50182 * 252.50783 * 27 26 15 48 48 H 1.08999 * 117.49337 * 107.48548 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6049 1.1473 0.0061 5 8 4.3043 2.3077 0.0121 6 7 4.2548 -0.0066 0.0006 7 6 3.6205 -1.1600 -0.0055 8 6 4.4081 -2.4448 -0.0110 9 6 2.2256 -1.2043 -0.0057 10 6 1.5172 -2.4994 -0.0120 11 8 1.2259 -3.0278 -1.0675 12 7 1.1933 -3.0960 1.1524 13 6 0.4898 -4.3810 1.1462 14 6 0.2440 -4.8348 2.5865 15 6 -0.5888 -6.1182 2.5818 16 6 -2.0953 -5.9266 2.3949 17 7 -2.6414 -5.2007 3.5442 18 6 -3.9540 -4.8105 3.5467 19 1 -4.5865 -5.0375 2.7011 20 6 -4.4717 -4.1232 4.6359 21 7 -3.7008 -3.8461 5.6661 22 14 -6.2621 -3.5903 4.6390 23 1 -7.0971 -4.6639 5.2350 24 1 -6.4075 -2.3481 5.4397 25 1 -6.7050 -3.3352 3.2448 26 6 -0.1287 -7.2624 3.4874 27 6 0.0452 -7.3697 1.9712 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8924 -0.5095 31 1 1.6935 2.1314 -0.0004 32 1 4.5077 2.6490 -0.8695 33 1 4.5984 -2.7499 -1.0400 34 1 5.3565 -2.2919 0.5039 35 1 3.8389 -3.2220 0.4990 36 1 1.4255 -2.6742 1.9944 37 1 -0.4652 -4.2699 0.6327 38 1 1.0960 -5.1246 0.6289 39 1 1.1996 -5.0236 3.0760 40 1 -0.2930 -4.0552 3.1266 41 1 -2.2787 -5.3561 1.4843 42 1 -2.5785 -6.9005 2.3171 43 1 -2.0733 -4.9965 4.3035 44 1 -4.0625 -3.3654 6.4271 45 1 0.7671 -7.1006 4.0870 46 1 -0.8994 -7.8787 3.9505 47 1 -0.6109 -8.0567 1.4366 48 1 1.0557 -7.2786 1.5729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168256892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:37 Heat of formation + Delta-G solvation = -17.361747 kcal Electronic energy + Delta-G solvation = -28360.581772 eV Core-core repulsion = 24416.519749 eV Total energy + Delta-G solvation = -3944.062023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22027 -39.52129 -38.30483 -37.42251 -34.88826 -34.60927 -33.93388 -32.23945 -30.79594 -29.98620 -28.34758 -27.97855 -25.99618 -24.41601 -23.07844 -22.75221 -21.79409 -21.63516 -20.85494 -18.91101 -18.63709 -17.71236 -17.48591 -17.06403 -16.28282 -15.96126 -15.46455 -14.99561 -14.77901 -14.49490 -14.39409 -14.14301 -13.92358 -13.60421 -13.45626 -13.42578 -13.16071 -12.95055 -12.69948 -12.63317 -12.39961 -12.26857 -12.19680 -11.94975 -11.93839 -11.49292 -11.15760 -10.98636 -10.86644 -10.67225 -10.30105 -10.15047 -9.92990 -9.87384 -9.73806 -9.65272 -9.35026 -9.11948 -9.10921 -8.86939 -6.92099 -5.78046 -3.05927 0.43594 0.80700 2.40247 2.96063 3.03118 3.37955 3.41945 3.47584 3.48760 4.03228 4.10252 4.20740 4.47421 4.59744 4.69542 4.86360 4.98504 5.00995 5.06822 5.11877 5.13139 5.24269 5.28154 5.28476 5.35015 5.49794 5.55739 5.57258 5.63791 5.64511 5.71877 5.79527 5.87165 5.89252 6.08704 6.11714 6.15854 6.20769 6.35626 6.41050 6.44429 6.52738 6.73412 6.82285 7.07929 7.35624 7.52156 7.68882 8.04329 8.41089 9.52772 10.11042 10.46786 11.44707 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.002858 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.744680 B = 9794.783454 C =11531.623595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.017 3.983 3 C -0.196 4.196 4 C 0.331 3.669 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.194 3.806 8 C -0.111 4.111 9 C -0.193 4.193 10 C 0.572 3.428 11 O -0.529 6.529 12 N -0.717 5.717 13 C 0.123 3.877 14 C -0.091 4.091 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.164 4.164 27 C -0.177 4.177 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.017 0.983 43 H 0.385 0.615 44 H 0.254 0.746 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.776 5.992 -11.677 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.009 3.991 3 C -0.217 4.217 4 C 0.153 3.847 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.168 4.168 9 C -0.198 4.198 10 C 0.356 3.644 11 O -0.406 6.406 12 N -0.368 5.368 13 C 0.001 3.999 14 C -0.129 4.129 15 C -0.120 4.120 16 C 0.060 3.940 17 N -0.371 5.371 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.201 4.201 27 C -0.215 4.215 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.261 0.739 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.242 5.654 -11.892 21.695 hybrid contribution -1.521 0.841 0.315 1.766 sum 15.721 6.494 -11.577 20.575 Atomic orbital electron populations 1.21002 0.88935 1.04375 1.04208 1.20264 0.97175 0.90784 0.90877 1.21909 0.93713 0.99476 1.06620 1.19244 0.87047 0.85030 0.93374 1.84723 1.75980 1.33980 1.34134 1.66979 1.41843 0.97828 1.16166 1.21013 0.89099 0.93180 0.91211 1.20854 1.00425 0.91504 1.04036 1.20712 0.94847 0.94468 1.09784 1.17824 0.78530 0.83780 0.84271 1.90829 1.53931 1.64932 1.30896 1.46108 1.58952 1.23432 1.08261 1.21440 0.97132 0.83236 0.98111 1.21257 0.99189 0.97406 0.95053 1.21559 0.96471 0.89036 1.04950 1.20182 0.87017 0.95116 0.91671 1.42291 1.09813 1.67065 1.17965 1.19229 0.87106 1.28998 1.01528 0.91293 1.24711 0.97955 1.01540 0.96741 1.69661 1.34845 1.46052 1.07643 0.86219 0.85070 0.77848 0.77239 1.21771 1.21810 1.20789 1.22965 1.02691 1.01986 0.92506 1.22977 1.01429 1.00741 0.96348 0.89103 0.90193 0.90092 0.83504 0.73886 0.89431 0.89590 0.90310 0.76298 0.90703 0.91455 0.91869 0.89384 0.95583 0.96566 0.78161 0.93586 0.89310 0.88601 0.88934 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.69 36.01 0.35 -0.92 16 2 C 0.02 0.18 5.95 -103.96 -0.62 -0.44 16 3 C -0.20 -1.87 9.72 -39.34 -0.38 -2.26 16 4 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 5 O -0.48 -4.14 13.55 -18.17 -0.25 -4.39 16 6 N -0.51 -6.07 10.28 -9.20 -0.09 -6.17 16 7 C 0.19 2.23 6.82 -82.18 -0.56 1.67 16 8 C -0.11 -1.03 9.78 36.01 0.35 -0.68 16 9 C -0.19 -2.30 5.65 -104.82 -0.59 -2.89 16 10 C 0.57 7.56 4.32 -12.43 -0.05 7.51 16 11 O -0.53 -8.80 17.11 5.29 0.09 -8.71 16 12 N -0.72 -8.49 5.55 -61.32 -0.34 -8.83 16 13 C 0.12 1.61 5.51 -4.04 -0.02 1.59 16 14 C -0.09 -1.24 5.24 -26.73 -0.14 -1.38 16 15 C -0.12 -1.82 1.52 -154.51 -0.23 -2.05 16 16 C 0.19 3.67 6.10 -4.04 -0.02 3.65 16 17 N -0.73 -17.73 5.30 -59.90 -0.32 -18.05 16 18 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.16 -2.33 9.90 -26.73 -0.26 -2.59 16 27 C -0.18 -2.26 9.57 -26.73 -0.26 -2.51 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.93 7.19 -51.93 -0.37 0.56 16 30 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.40 1.36 9.06 45.56 0.41 1.77 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.71 7.07 -51.93 -0.37 0.34 16 36 H 0.40 4.11 8.46 -40.82 -0.35 3.77 16 37 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 38 H 0.07 0.85 7.80 -51.93 -0.41 0.44 16 39 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 40 H 0.09 1.42 7.64 -51.93 -0.40 1.02 16 41 H 0.03 0.52 7.69 -51.93 -0.40 0.13 16 42 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.38 9.85 7.46 -40.82 -0.30 9.54 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 46 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.09 0.99 7.98 -51.93 -0.41 0.58 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -34.05 403.85 -8.69 -42.74 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.75 Total: 12.13 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.82 Total: -5.08 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.03 Total: -59.91 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.16 Total: -13.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.05 -8.69 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168256892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.379 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds