Wall clock time and date at job start Tue Mar 31 2020 17:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 120.82505 * 2 1 4 4 C 1.39118 * 119.26670 * 179.97438 * 3 2 1 5 5 O 1.35504 * 119.52537 * 180.28262 * 4 3 2 6 6 N 1.32435 * 120.95228 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.80094 * 359.97438 * 6 4 3 8 8 C 1.39566 * 120.62348 * 0.02562 * 7 6 4 9 9 C 1.47611 * 120.49858 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99891 * 139.24004 * 9 8 7 11 11 N 1.34773 * 120.00359 * 319.23589 * 9 8 7 12 12 C 1.48152 * 127.83509 * 4.56261 * 11 9 8 13 13 C 1.54395 * 104.61667 * 219.58247 * 12 11 9 14 14 H 1.09001 * 110.34039 * 95.10871 * 13 12 11 15 15 C 1.52994 * 110.33923 * 217.25831 * 13 12 11 16 16 C 1.54282 * 104.96076 * 336.13237 * 13 12 11 17 17 C 1.52994 * 110.34485 * 241.13048 * 16 13 12 18 18 C 1.52993 * 110.34322 * 118.97444 * 16 13 12 19 19 N 1.46506 * 109.47228 * 180.02562 * 18 16 13 20 20 C 1.36938 * 120.00102 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99979 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00018 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46989 * 90.00321 * 24 22 20 26 26 H 1.48496 * 109.47038 * 210.00385 * 24 22 20 27 27 H 1.48509 * 109.47041 * 330.00337 * 24 22 20 28 28 C 1.48144 * 127.84220 * 184.23947 * 11 9 8 29 29 H 1.09004 * 109.46569 * 264.66448 * 1 2 3 30 30 H 1.08994 * 109.47072 * 24.66180 * 1 2 3 31 31 H 1.08995 * 109.47411 * 144.66576 * 1 2 3 32 32 H 1.08003 * 120.36621 * 359.97438 * 3 2 1 33 33 H 0.96701 * 113.99994 * 269.72548 * 5 4 3 34 34 H 1.07994 * 119.69014 * 180.02562 * 7 6 4 35 35 H 1.08999 * 110.40571 * 338.36246 * 12 11 9 36 36 H 1.09000 * 110.40761 * 100.67662 * 12 11 9 37 37 H 1.09005 * 109.47204 * 58.55114 * 15 13 12 38 38 H 1.09003 * 109.46903 * 178.54673 * 15 13 12 39 39 H 1.08994 * 109.47843 * 298.54701 * 15 13 12 40 40 H 1.09003 * 109.47218 * 59.99580 * 17 16 13 41 41 H 1.08990 * 109.47754 * 180.02562 * 17 16 13 42 42 H 1.09001 * 109.46913 * 300.00480 * 17 16 13 43 43 H 1.08998 * 109.47807 * 300.00188 * 18 16 13 44 44 H 1.09004 * 109.46958 * 59.99999 * 18 16 13 45 45 H 0.96995 * 119.99806 * 359.97438 * 19 18 16 46 46 H 0.96996 * 119.99877 * 179.97438 * 23 22 20 47 47 H 1.09004 * 110.40766 * 259.20089 * 28 11 9 48 48 H 1.09000 * 110.40501 * 21.63237 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3077 0.0064 6 7 4.2548 -0.0067 0.0005 7 6 3.6205 -1.1602 0.0005 8 6 2.2255 -1.2045 0.0000 9 6 1.5171 -2.4995 0.0006 10 8 0.5254 -2.6496 0.6877 11 7 1.9695 -3.5155 -0.7606 12 6 3.2003 -3.5558 -1.5843 13 6 2.7838 -4.3005 -2.8710 14 1 2.5079 -3.5882 -3.6486 15 6 3.9213 -5.2015 -3.3558 16 6 1.5632 -5.1507 -2.4618 17 6 1.8590 -6.6381 -2.6644 18 6 0.3325 -4.7390 -3.2720 19 7 -0.8140 -5.5568 -2.8682 20 6 -2.0335 -5.3668 -3.4615 21 1 -2.1501 -4.6138 -4.2269 22 6 -3.1196 -6.1421 -3.0793 23 7 -2.9776 -7.0594 -2.1463 24 14 -4.7833 -5.8824 -3.8882 25 1 -4.8950 -6.7579 -5.0824 26 1 -5.8607 -6.2207 -2.9239 27 1 -4.9166 -4.4622 -4.3013 28 6 1.3524 -4.8476 -0.9585 29 1 -0.3632 -0.0956 1.0233 30 1 -0.3633 0.9339 -0.4288 31 1 -0.3634 -0.8383 -0.5943 32 1 1.6937 2.1314 -0.0004 33 1 4.5115 2.6465 -0.8753 34 1 4.1848 -2.0809 0.0010 35 1 3.5326 -2.5450 -1.8208 36 1 3.9876 -4.1020 -1.0647 37 1 4.1775 -5.9160 -2.5735 38 1 3.6033 -5.7393 -4.2491 39 1 4.7935 -4.5914 -3.5904 40 1 2.7138 -6.9253 -2.0520 41 1 0.9885 -7.2249 -2.3718 42 1 2.0857 -6.8237 -3.7143 43 1 0.1112 -3.6877 -3.0879 44 1 0.5298 -4.8882 -4.3336 45 1 -0.7091 -6.2334 -2.1811 46 1 -3.7366 -7.6009 -1.8789 47 1 1.8548 -5.5944 -0.3436 48 1 0.2889 -4.8126 -0.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182588869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:42 Heat of formation + Delta-G solvation = -20.170512 kcal Electronic energy + Delta-G solvation = -29668.379011 eV Core-core repulsion = 25724.195191 eV Total energy + Delta-G solvation = -3944.183820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16528 -40.01009 -38.38402 -37.18948 -34.87896 -34.08157 -33.31776 -31.58502 -30.92725 -29.55284 -28.28602 -27.00822 -25.80582 -25.69365 -24.26849 -23.23509 -22.48829 -21.19883 -19.85438 -18.72031 -18.39641 -17.80931 -17.32117 -16.69806 -16.29896 -15.98145 -15.31943 -15.08812 -14.68062 -14.47913 -14.19937 -14.15230 -13.76382 -13.49407 -13.25204 -13.08031 -12.98770 -12.86910 -12.77684 -12.67236 -12.33387 -11.98009 -11.95375 -11.92436 -11.55747 -11.45200 -11.23574 -10.98087 -10.82360 -10.50190 -10.33309 -10.21229 -10.17901 -9.91085 -9.83202 -9.61027 -9.55101 -9.23687 -8.86188 -8.62191 -6.89862 -5.74692 -3.02836 0.37503 0.85721 2.63289 2.86947 3.23328 3.44442 3.44729 3.49905 3.51754 4.21680 4.28507 4.40892 4.53289 4.61082 4.67540 4.76805 4.88635 4.94393 5.15085 5.26368 5.32656 5.34855 5.36887 5.47964 5.49479 5.54373 5.57415 5.64082 5.70277 5.77247 5.84266 5.94789 6.01246 6.04831 6.09650 6.15522 6.18731 6.21289 6.29908 6.41688 6.52049 6.68473 6.78195 6.86816 7.08516 7.49299 7.58677 7.71482 8.16146 8.44236 9.55612 10.12546 10.47242 11.48210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003443 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.661445 B = 8129.621702 C = 9523.602098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 C -0.193 4.193 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.510 5.510 7 C 0.158 3.842 8 C -0.188 4.188 9 C 0.582 3.418 10 O -0.520 6.520 11 N -0.613 5.613 12 C 0.097 3.903 13 C -0.097 4.097 14 H 0.082 0.918 15 C -0.142 4.142 16 C -0.075 4.075 17 C -0.134 4.134 18 C 0.170 3.830 19 N -0.729 5.729 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.115 3.885 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.167 0.833 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.069 0.931 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.795 12.839 0.999 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.021 3.979 3 C -0.214 4.214 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.229 5.229 7 C 0.000 4.000 8 C -0.193 4.193 9 C 0.370 3.630 10 O -0.396 6.396 11 N -0.346 5.346 12 C -0.026 4.026 13 C -0.117 4.117 14 H 0.100 0.900 15 C -0.199 4.199 16 C -0.077 4.077 17 C -0.192 4.192 18 C 0.042 3.958 19 N -0.374 5.374 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.007 4.007 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.935 12.954 1.953 22.209 hybrid contribution -1.611 0.053 -0.737 1.772 sum 16.324 13.007 1.216 20.908 Atomic orbital electron populations 1.20952 0.88637 1.03628 1.04462 1.20319 0.97591 0.90583 0.89375 1.21955 0.93700 0.99486 1.06304 1.19324 0.87092 0.85207 0.93391 1.84731 1.75905 1.34100 1.34137 1.67174 1.41911 0.98192 1.15639 1.22833 0.90170 0.95277 0.91766 1.20905 0.95266 0.94461 1.08689 1.17426 0.83830 0.82102 0.79632 1.90859 1.25706 1.82189 1.40839 1.48816 1.25088 1.14767 1.45880 1.22737 0.87361 1.00969 0.91581 1.22134 0.95540 0.97523 0.96493 0.89998 1.21896 0.96896 0.99340 1.01816 1.21785 0.95285 0.96039 0.94543 1.21872 1.01547 0.94127 1.01619 1.20631 0.85966 0.94152 0.95055 1.42388 1.05334 1.42647 1.47006 1.19184 0.86790 1.15299 1.15698 0.91391 1.24708 0.98022 0.98825 0.99264 1.69644 1.30484 1.24981 1.32970 0.86212 0.84240 0.77495 0.78370 1.21795 1.21776 1.20847 1.22672 1.01109 0.81764 0.95127 0.89094 0.90954 0.89737 0.83496 0.73874 0.81640 0.90502 0.90565 0.91962 0.91703 0.93011 0.93032 0.91231 0.92150 0.96618 0.96199 0.78077 0.93523 0.91259 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.84 36.01 0.32 -1.11 16 2 C 0.03 0.35 5.94 -103.95 -0.62 -0.26 16 3 C -0.19 -1.93 9.70 -39.34 -0.38 -2.31 16 4 C 0.33 3.48 7.74 -16.97 -0.13 3.35 16 5 O -0.48 -4.13 13.55 -18.20 -0.25 -4.38 16 6 N -0.51 -6.00 10.37 -12.97 -0.13 -6.14 16 7 C 0.16 1.78 8.97 -17.14 -0.15 1.62 16 8 C -0.19 -2.44 5.49 -104.82 -0.58 -3.01 16 9 C 0.58 9.17 6.92 -12.44 -0.09 9.08 16 10 O -0.52 -10.18 15.61 5.29 0.08 -10.10 16 11 N -0.61 -8.70 3.31 -170.24 -0.56 -9.26 16 12 C 0.10 1.01 4.97 -2.40 -0.01 1.00 16 13 C -0.10 -1.10 3.30 -89.22 -0.29 -1.40 16 14 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 15 C -0.14 -1.28 7.93 37.15 0.29 -0.99 16 16 C -0.08 -1.12 0.73 -152.90 -0.11 -1.23 16 17 C -0.13 -1.90 7.10 37.15 0.26 -1.64 16 18 C 0.17 3.33 4.96 -4.04 -0.02 3.31 16 19 N -0.73 -18.00 4.80 -59.91 -0.29 -18.29 16 20 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.11 1.84 5.92 -2.19 -0.01 1.82 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.08 1.23 6.98 -51.93 -0.36 0.86 16 32 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.40 1.34 9.06 45.56 0.41 1.75 16 34 H 0.17 1.52 6.41 -52.49 -0.34 1.19 16 35 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 36 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 38 H 0.06 0.62 6.98 -51.93 -0.36 0.25 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.60 6.67 -51.93 -0.35 0.25 16 41 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 42 H 0.06 0.82 6.88 -51.93 -0.36 0.46 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 9.90 5.99 -40.82 -0.24 9.66 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 48 H 0.10 2.05 7.01 -51.93 -0.36 1.69 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -34.79 379.10 -7.76 -42.55 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.26 Total: 8.78 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.77 Total: 0.96 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.26 Total: -61.10 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.16 Total: -14.48 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.79 -7.76 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182588869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.384 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds