Wall clock time and date at job start Tue Mar 31 2020 17:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 120.82505 * 2 1 4 4 C 1.39118 * 119.26670 * 179.97438 * 3 2 1 5 5 O 1.35504 * 119.52537 * 180.28262 * 4 3 2 6 6 N 1.32435 * 120.95228 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.80094 * 359.97438 * 6 4 3 8 8 C 1.39566 * 120.62348 * 0.02562 * 7 6 4 9 9 C 1.47611 * 120.49858 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99891 * 139.24004 * 9 8 7 11 11 N 1.34773 * 120.00359 * 319.23589 * 9 8 7 12 12 C 1.48152 * 127.83509 * 4.56261 * 11 9 8 13 13 C 1.54395 * 104.61667 * 219.58247 * 12 11 9 14 14 H 1.09001 * 110.34039 * 95.10871 * 13 12 11 15 15 C 1.52994 * 110.33923 * 217.25831 * 13 12 11 16 16 C 1.54282 * 104.96076 * 336.13237 * 13 12 11 17 17 C 1.52994 * 110.34485 * 241.13048 * 16 13 12 18 18 C 1.52993 * 110.34322 * 118.97444 * 16 13 12 19 19 N 1.46506 * 109.47228 * 180.02562 * 18 16 13 20 20 C 1.36938 * 120.00102 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99979 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00018 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46989 * 90.00321 * 24 22 20 26 26 H 1.48496 * 109.47038 * 210.00385 * 24 22 20 27 27 H 1.48509 * 109.47041 * 330.00337 * 24 22 20 28 28 C 1.48144 * 127.84220 * 184.23947 * 11 9 8 29 29 H 1.09004 * 109.46569 * 264.66448 * 1 2 3 30 30 H 1.08994 * 109.47072 * 24.66180 * 1 2 3 31 31 H 1.08995 * 109.47411 * 144.66576 * 1 2 3 32 32 H 1.08003 * 120.36621 * 359.97438 * 3 2 1 33 33 H 0.96701 * 113.99994 * 269.72548 * 5 4 3 34 34 H 1.07994 * 119.69014 * 180.02562 * 7 6 4 35 35 H 1.08999 * 110.40571 * 338.36246 * 12 11 9 36 36 H 1.09000 * 110.40761 * 100.67662 * 12 11 9 37 37 H 1.09005 * 109.47204 * 58.55114 * 15 13 12 38 38 H 1.09003 * 109.46903 * 178.54673 * 15 13 12 39 39 H 1.08994 * 109.47843 * 298.54701 * 15 13 12 40 40 H 1.09003 * 109.47218 * 59.99580 * 17 16 13 41 41 H 1.08990 * 109.47754 * 180.02562 * 17 16 13 42 42 H 1.09001 * 109.46913 * 300.00480 * 17 16 13 43 43 H 1.08998 * 109.47807 * 300.00188 * 18 16 13 44 44 H 1.09004 * 109.46958 * 59.99999 * 18 16 13 45 45 H 0.96995 * 119.99806 * 359.97438 * 19 18 16 46 46 H 0.96996 * 119.99877 * 179.97438 * 23 22 20 47 47 H 1.09004 * 110.40766 * 259.20089 * 28 11 9 48 48 H 1.09000 * 110.40501 * 21.63237 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3077 0.0064 6 7 4.2548 -0.0067 0.0005 7 6 3.6205 -1.1602 0.0005 8 6 2.2255 -1.2045 0.0000 9 6 1.5171 -2.4995 0.0006 10 8 0.5254 -2.6496 0.6877 11 7 1.9695 -3.5155 -0.7606 12 6 3.2003 -3.5558 -1.5843 13 6 2.7838 -4.3005 -2.8710 14 1 2.5079 -3.5882 -3.6486 15 6 3.9213 -5.2015 -3.3558 16 6 1.5632 -5.1507 -2.4618 17 6 1.8590 -6.6381 -2.6644 18 6 0.3325 -4.7390 -3.2720 19 7 -0.8140 -5.5568 -2.8682 20 6 -2.0335 -5.3668 -3.4615 21 1 -2.1501 -4.6138 -4.2269 22 6 -3.1196 -6.1421 -3.0793 23 7 -2.9776 -7.0594 -2.1463 24 14 -4.7833 -5.8824 -3.8882 25 1 -4.8950 -6.7579 -5.0824 26 1 -5.8607 -6.2207 -2.9239 27 1 -4.9166 -4.4622 -4.3013 28 6 1.3524 -4.8476 -0.9585 29 1 -0.3632 -0.0956 1.0233 30 1 -0.3633 0.9339 -0.4288 31 1 -0.3634 -0.8383 -0.5943 32 1 1.6937 2.1314 -0.0004 33 1 4.5115 2.6465 -0.8753 34 1 4.1848 -2.0809 0.0010 35 1 3.5326 -2.5450 -1.8208 36 1 3.9876 -4.1020 -1.0647 37 1 4.1775 -5.9160 -2.5735 38 1 3.6033 -5.7393 -4.2491 39 1 4.7935 -4.5914 -3.5904 40 1 2.7138 -6.9253 -2.0520 41 1 0.9885 -7.2249 -2.3718 42 1 2.0857 -6.8237 -3.7143 43 1 0.1112 -3.6877 -3.0879 44 1 0.5298 -4.8882 -4.3336 45 1 -0.7091 -6.2334 -2.1811 46 1 -3.7366 -7.6009 -1.8789 47 1 1.8548 -5.5944 -0.3436 48 1 0.2889 -4.8126 -0.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182588869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:41 Heat of formation + Delta-G solvation = -47.619747 kcal Electronic energy + Delta-G solvation = -29669.569299 eV Core-core repulsion = 25724.195191 eV Total energy + Delta-G solvation = -3945.374108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12656 -41.05226 -39.52359 -38.01858 -36.54421 -35.06875 -34.66768 -33.15977 -31.96001 -31.01293 -29.21544 -28.14340 -27.34401 -26.71777 -25.47535 -24.79066 -23.36933 -22.48210 -20.91763 -19.75047 -19.47807 -19.24148 -18.58875 -17.86567 -17.31744 -16.88257 -16.70369 -16.47422 -16.09246 -15.61781 -15.38149 -15.20869 -15.15121 -14.79249 -14.52616 -14.37946 -14.18537 -14.04957 -13.75780 -13.68727 -13.28677 -13.13241 -13.03747 -12.91275 -12.88756 -12.76273 -12.62849 -12.60871 -12.30314 -12.09264 -11.96359 -11.62006 -11.29334 -11.26001 -11.16999 -10.95805 -10.72515 -10.54154 -10.10875 -9.77848 -8.99654 -7.96443 -5.24205 -0.49787 0.00536 1.43543 1.45851 1.52335 1.53926 1.81183 2.42400 2.53895 2.59214 3.25827 3.36786 3.43691 3.50569 3.56707 3.63869 3.76864 3.90953 4.13861 4.16158 4.21252 4.30452 4.34654 4.38905 4.52088 4.53179 4.59881 4.63468 4.63854 4.72465 4.82011 4.84236 4.89184 4.95758 5.01492 5.06221 5.13203 5.16496 5.22906 5.31903 5.32975 5.41701 5.46337 5.47766 5.68674 6.25980 6.45709 6.50962 6.73896 6.98388 7.32664 8.09151 8.32761 9.27022 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003443 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.661445 B = 8129.621702 C = 9523.602098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.018 3.982 3 C -0.184 4.184 4 C 0.334 3.666 5 O -0.484 6.484 6 N -0.523 5.523 7 C 0.168 3.832 8 C -0.207 4.207 9 C 0.577 3.423 10 O -0.575 6.575 11 N -0.612 5.612 12 C 0.097 3.903 13 C -0.089 4.089 14 H 0.077 0.923 15 C -0.137 4.137 16 C -0.068 4.068 17 C -0.127 4.127 18 C 0.171 3.829 19 N -0.738 5.738 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.971 3.029 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.273 1.273 28 C 0.117 3.883 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.175 0.825 33 H 0.427 0.573 34 H 0.188 0.812 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.068 0.932 43 H -0.003 1.003 44 H 0.024 0.976 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.088 0.912 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.827 14.535 -0.074 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.010 3.990 3 C -0.205 4.205 4 C 0.156 3.844 5 O -0.296 6.296 6 N -0.242 5.242 7 C 0.010 3.990 8 C -0.212 4.212 9 C 0.367 3.633 10 O -0.455 6.455 11 N -0.344 5.344 12 C -0.025 4.025 13 C -0.108 4.108 14 H 0.096 0.904 15 C -0.194 4.194 16 C -0.069 4.069 17 C -0.184 4.184 18 C 0.044 3.956 19 N -0.382 5.382 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.198 1.198 28 C -0.006 4.006 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.192 0.808 33 H 0.290 0.710 34 H 0.204 0.796 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.015 0.985 44 H 0.042 0.958 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.106 0.894 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.035 14.689 0.812 25.669 hybrid contribution -2.488 -0.355 -0.425 2.548 sum 18.547 14.334 0.387 23.444 Atomic orbital electron populations 1.20865 0.89284 1.03571 1.03452 1.20421 0.97416 0.91263 0.89950 1.22128 0.93609 0.99646 1.05131 1.19495 0.87403 0.85534 0.91928 1.84685 1.75516 1.33099 1.36276 1.67273 1.42045 0.98566 1.16330 1.23042 0.89231 0.96088 0.90610 1.20761 0.96122 0.93127 1.11183 1.17943 0.83285 0.83157 0.78944 1.90819 1.28235 1.83170 1.43311 1.48906 1.26085 1.13690 1.45692 1.23046 0.86248 1.02509 0.90667 1.22111 0.94570 0.97256 0.96910 0.90430 1.21878 0.96409 0.99309 1.01851 1.21678 0.94805 0.97455 0.92952 1.21827 1.01181 0.92649 1.02762 1.20749 0.86587 0.92330 0.95941 1.42566 1.06022 1.42990 1.46601 1.19577 0.88223 1.14685 1.15289 0.91226 1.25524 1.01623 0.99100 1.00326 1.69805 1.31144 1.26141 1.34660 0.85179 0.79658 0.77827 0.77342 1.20967 1.22247 1.19802 1.22504 0.98277 0.83511 0.96281 0.90051 0.87997 0.93321 0.80773 0.71042 0.79564 0.88724 0.87222 0.90863 0.92146 0.90457 0.89580 0.95015 0.91298 0.98484 0.95825 0.79039 0.94023 0.89422 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.84 71.24 0.63 -2.22 16 2 C 0.02 0.41 5.94 -19.43 -0.12 0.30 16 3 C -0.18 -3.25 9.70 22.42 0.22 -3.03 16 4 C 0.33 6.12 7.74 84.81 0.66 6.77 16 5 O -0.48 -6.63 13.55 -88.05 -1.19 -7.82 16 6 N -0.52 -10.82 10.37 -307.80 -3.19 -14.01 16 7 C 0.17 3.42 8.97 85.04 0.76 4.19 16 8 C -0.21 -5.27 5.49 -19.99 -0.11 -5.38 16 9 C 0.58 18.86 6.92 86.72 0.60 19.46 16 10 O -0.58 -24.35 15.61 -3.98 -0.06 -24.41 16 11 N -0.61 -17.40 3.31 -810.78 -2.69 -20.09 16 12 C 0.10 1.75 4.97 86.54 0.43 2.18 16 13 C -0.09 -1.80 3.30 -9.89 -0.03 -1.84 16 14 H 0.08 1.67 7.72 -2.39 -0.02 1.66 16 15 C -0.14 -1.91 7.93 71.98 0.57 -1.34 16 16 C -0.07 -2.01 0.73 -51.14 -0.04 -2.05 16 17 C -0.13 -3.49 7.10 71.98 0.51 -2.98 16 18 C 0.17 6.93 4.96 86.38 0.43 7.36 16 19 N -0.74 -38.33 4.80 -343.44 -1.65 -39.98 16 20 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 23 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 24 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 28 C 0.12 3.86 5.92 86.68 0.51 4.37 16 29 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.05 1.54 6.98 -2.39 -0.02 1.52 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.43 1.23 9.06 -74.06 -0.67 0.55 16 34 H 0.19 2.82 6.41 -2.91 -0.02 2.81 16 35 H 0.09 1.44 5.93 -2.39 -0.01 1.43 16 36 H 0.11 1.34 7.85 -2.39 -0.02 1.32 16 37 H 0.07 0.89 6.61 -2.38 -0.02 0.88 16 38 H 0.06 0.93 6.98 -2.39 -0.02 0.92 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 1.77 6.67 -2.39 -0.02 1.75 16 41 H 0.03 1.11 6.74 -2.39 -0.02 1.09 16 42 H 0.07 1.77 6.88 -2.39 -0.02 1.75 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.38 20.63 5.99 -92.71 -0.56 20.07 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.09 2.53 7.84 -2.39 -0.02 2.51 16 48 H 0.04 2.01 7.01 -2.39 -0.02 1.99 16 Total: -1.00 -80.81 379.10 -0.36 -81.17 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.22 Total: 27.37 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.33 Total: 8.55 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -7.24 Total: -134.45 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.25 Total: -32.23 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -80.81 -0.36 -81.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182588869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.552 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds