Wall clock time and date at job start Tue Mar 31 2020 17:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38002 * 120.82273 * 2 1 4 4 C 1.39123 * 119.26472 * 180.27159 * 3 2 1 5 5 O 1.35497 * 119.52325 * 179.71932 * 4 3 2 6 6 N 1.32440 * 120.95147 * 359.70188 * 4 3 2 7 7 C 1.31636 * 121.79639 * 0.02562 * 6 4 3 8 8 C 1.39559 * 120.62795 * 0.02562 * 7 6 4 9 9 C 1.47618 * 120.50009 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00220 * 126.02549 * 9 8 7 11 11 N 1.34787 * 119.99877 * 306.03146 * 9 8 7 12 12 C 1.46916 * 120.63043 * 354.22163 * 11 9 8 13 13 C 1.53190 * 108.77643 * 233.63418 * 12 11 9 14 14 C 1.53039 * 109.31414 * 305.36338 * 13 12 11 15 15 H 1.08998 * 109.44869 * 301.35849 * 14 13 12 16 16 C 1.52995 * 109.46644 * 181.38398 * 14 13 12 17 17 N 1.46502 * 109.47084 * 64.93320 * 16 14 13 18 18 C 1.36936 * 120.00329 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99867 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99934 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47207 * 270.00027 * 22 20 18 24 24 H 1.48503 * 109.46927 * 30.00184 * 22 20 18 25 25 H 1.48493 * 109.46957 * 149.99980 * 22 20 18 26 26 C 1.53051 * 109.53528 * 61.36315 * 14 13 12 27 27 H 1.08991 * 109.49440 * 178.65232 * 26 14 13 28 28 C 1.53001 * 109.49198 * 58.58835 * 26 14 13 29 29 C 1.46926 * 120.63041 * 174.24736 * 11 9 8 30 30 H 1.08998 * 109.47692 * 275.17040 * 1 2 3 31 31 H 1.08996 * 109.47273 * 35.17079 * 1 2 3 32 32 H 1.09005 * 109.47218 * 155.16655 * 1 2 3 33 33 H 1.08004 * 120.36256 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00179 * 269.97908 * 5 4 3 35 35 H 1.08004 * 119.68185 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.58877 * 353.42267 * 12 11 9 37 37 H 1.08997 * 109.58872 * 113.69875 * 12 11 9 38 38 H 1.09007 * 109.50024 * 185.41372 * 13 12 11 39 39 H 1.09002 * 109.49930 * 65.32002 * 13 12 11 40 40 H 1.09003 * 109.46895 * 304.94087 * 16 14 13 41 41 H 1.08991 * 109.47923 * 184.93334 * 16 14 13 42 42 H 0.97007 * 119.99553 * 359.97438 * 17 16 14 43 43 H 0.96999 * 120.00349 * 359.97438 * 21 20 18 44 44 H 1.08997 * 109.47495 * 60.00282 * 28 26 14 45 45 H 1.09004 * 109.46739 * 179.97438 * 28 26 14 46 46 H 1.08992 * 109.47533 * 299.99626 * 28 26 14 47 47 H 1.09011 * 109.58480 * 6.57947 * 29 11 9 48 48 H 1.08994 * 109.70221 * 246.22552 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3042 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0053 7 6 3.6204 -1.1600 0.0001 8 6 2.2256 -1.2043 0.0050 9 6 1.5171 -2.4994 0.0104 10 8 0.6850 -2.7335 0.8654 11 7 1.7928 -3.4223 -0.9324 12 6 2.7009 -3.1088 -2.0439 13 6 1.9896 -3.4198 -3.3645 14 6 1.4968 -4.8686 -3.3451 15 1 2.3442 -5.5381 -3.1975 16 6 0.8161 -5.1935 -4.6761 17 7 1.8031 -5.1328 -5.7570 18 6 1.4222 -5.3884 -7.0473 19 1 0.3942 -5.6352 -7.2680 20 6 2.3575 -5.3314 -8.0713 21 7 3.6105 -5.0311 -7.8022 22 14 1.8381 -5.6808 -9.8313 23 1 1.9861 -7.1314 -10.1124 24 1 0.4195 -5.2828 -10.0170 25 1 2.6957 -4.9059 -10.7636 26 6 0.4960 -5.0535 -2.2020 27 1 0.1274 -6.0792 -2.2036 28 6 -0.6769 -4.0890 -2.3895 29 6 1.1904 -4.7609 -0.8683 30 1 -0.3634 0.0926 1.0234 31 1 -0.3633 0.8400 -0.5919 32 1 -0.3634 -0.9327 -0.4316 33 1 1.6935 2.1314 0.0004 34 1 4.5038 2.6423 -0.8966 35 1 4.1849 -2.0808 0.0007 36 1 2.9664 -2.0520 -2.0119 37 1 3.6031 -3.7148 -1.9608 38 1 2.6845 -3.2830 -4.1931 39 1 1.1399 -2.7481 -3.4871 40 1 0.0245 -4.4685 -4.8659 41 1 0.3883 -6.1950 -4.6306 42 1 2.7264 -4.9108 -5.5588 43 1 3.8802 -4.8493 -6.8884 44 1 -1.1690 -4.2957 -3.3399 45 1 -1.3897 -4.2214 -1.5754 46 1 -0.3081 -3.0634 -2.3867 47 1 0.4592 -4.7943 -0.0606 48 1 1.9666 -5.5050 -0.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185132169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:41 Heat of formation + Delta-G solvation = -32.091936 kcal Electronic energy + Delta-G solvation = -29497.558899 eV Core-core repulsion = 25552.858127 eV Total energy + Delta-G solvation = -3944.700772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37723 -40.10740 -38.32609 -37.30735 -35.24863 -34.24707 -33.71362 -32.00824 -30.83790 -30.25608 -28.41908 -27.06804 -26.67280 -24.53894 -23.44127 -23.20631 -22.68708 -21.68923 -20.39428 -18.79534 -18.54094 -17.94963 -17.38587 -17.16604 -16.37903 -16.11846 -15.49700 -15.02303 -14.92053 -14.68126 -14.37868 -14.15132 -14.06271 -13.68296 -13.67014 -13.38046 -13.17762 -13.08326 -13.00406 -12.73008 -12.55727 -12.42046 -12.29746 -12.09309 -11.70199 -11.49159 -11.06795 -10.76337 -10.71378 -10.49628 -10.41859 -10.22219 -10.17537 -10.00882 -9.96173 -9.70142 -9.28427 -9.19856 -8.88835 -8.73886 -7.01303 -6.12684 -3.12003 0.31139 0.75629 2.35604 2.71122 3.11287 3.33919 3.49899 3.54487 3.68436 4.08841 4.18511 4.26357 4.59194 4.62815 4.68433 4.78169 4.84841 4.90279 5.00083 5.02596 5.12933 5.21807 5.26454 5.33562 5.36538 5.43674 5.57164 5.59574 5.62668 5.67787 5.72238 5.75149 5.83661 5.88812 5.92682 6.01011 6.08281 6.16073 6.26064 6.31373 6.35240 6.51379 6.68833 6.81717 7.04488 7.16761 7.44526 7.79451 7.89326 8.73704 9.21270 10.07496 10.22577 11.35973 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002977 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.526781 B = 9402.581157 C =10592.976077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.021 3.979 3 C -0.192 4.192 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.164 3.836 8 C -0.192 4.192 9 C 0.569 3.431 10 O -0.533 6.533 11 N -0.597 5.597 12 C 0.102 3.898 13 C -0.125 4.125 14 C -0.090 4.090 15 H 0.071 0.929 16 C 0.164 3.836 17 N -0.743 5.743 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 C -0.098 4.098 27 H 0.083 0.917 28 C -0.144 4.144 29 C 0.117 3.883 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.166 0.834 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.366 0.634 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 10.457 17.415 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.013 3.987 3 C -0.213 4.213 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.225 5.225 7 C 0.006 3.994 8 C -0.197 4.197 9 C 0.356 3.644 10 O -0.410 6.410 11 N -0.329 5.329 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.037 3.963 17 N -0.389 5.389 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.591 5.591 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.117 4.117 27 H 0.102 0.898 28 C -0.202 4.202 29 C -0.005 4.005 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.264 0.736 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.111 0.889 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.141 10.212 16.824 19.930 hybrid contribution -0.925 0.242 1.057 1.425 sum -4.066 10.454 17.880 21.107 Atomic orbital electron populations 1.20914 0.89066 1.03876 1.03773 1.20230 0.97254 0.90725 0.90498 1.21935 0.93763 0.99491 1.06089 1.19331 0.87061 0.85253 0.93129 1.84714 1.75951 1.34040 1.34221 1.67199 1.41854 0.98196 1.15227 1.22715 0.89899 0.95382 0.91449 1.20875 0.95492 0.94449 1.08901 1.17927 0.81891 0.83045 0.81497 1.90790 1.33229 1.79103 1.37891 1.48050 1.46598 1.13319 1.24957 1.21977 0.92485 1.01383 0.86168 1.21948 1.01156 0.97326 0.95919 1.21335 0.98012 0.96232 0.95320 0.91059 1.20639 0.92197 0.97516 0.85951 1.42394 1.07286 1.85693 1.03544 1.20056 0.96278 1.44597 0.85185 0.91856 1.25747 0.94076 1.00653 1.03818 1.70863 1.16445 1.50563 1.21201 0.83206 0.74241 0.76203 0.75078 1.22330 1.22196 1.21385 1.21462 0.95995 1.00415 0.93863 0.89848 1.21856 0.97251 0.99387 1.01672 1.21739 0.97925 0.82161 0.98711 0.89408 0.90507 0.90463 0.83475 0.73605 0.81673 0.90175 0.90754 0.89770 0.91269 0.96019 0.96390 0.80074 0.93475 0.91943 0.93141 0.92750 0.88890 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.36 36.00 0.34 -0.72 16 2 C 0.02 0.21 5.94 -103.96 -0.62 -0.41 16 3 C -0.19 -1.71 9.74 -39.34 -0.38 -2.10 16 4 C 0.33 3.37 7.74 -16.96 -0.13 3.24 16 5 O -0.48 -4.11 13.55 -18.18 -0.25 -4.36 16 6 N -0.51 -5.87 10.37 -12.97 -0.13 -6.01 16 7 C 0.16 1.75 8.96 -17.14 -0.15 1.60 16 8 C -0.19 -2.14 4.61 -104.82 -0.48 -2.62 16 9 C 0.57 7.05 6.16 -12.43 -0.08 6.98 16 10 O -0.53 -7.97 15.49 5.30 0.08 -7.89 16 11 N -0.60 -6.78 2.41 -173.97 -0.42 -7.20 16 12 C 0.10 1.13 5.59 -3.72 -0.02 1.11 16 13 C -0.13 -1.72 4.90 -26.61 -0.13 -1.85 16 14 C -0.09 -1.31 1.96 -90.58 -0.18 -1.49 16 15 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.16 3.16 5.19 -4.04 -0.02 3.14 16 17 N -0.74 -18.06 5.32 -59.91 -0.32 -18.38 16 18 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 19 H 0.06 1.76 7.83 -52.49 -0.41 1.34 16 20 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 21 N -0.94 -28.69 13.70 55.49 0.76 -27.93 16 22 Si 1.08 25.72 29.92 -169.99 -5.09 20.63 16 23 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.10 -1.18 2.72 -90.50 -0.25 -1.43 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 29 C 0.12 1.30 5.84 -3.71 -0.02 1.28 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.08 0.80 6.71 -51.93 -0.35 0.45 16 33 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.41 1.46 9.06 45.56 0.41 1.87 16 35 H 0.17 1.47 7.76 -52.48 -0.41 1.06 16 36 H 0.08 0.83 5.39 -51.93 -0.28 0.55 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.33 7.15 -51.92 -0.37 0.96 16 39 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 40 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.37 8.97 5.68 -40.82 -0.23 8.74 16 43 H 0.25 7.54 6.77 -40.82 -0.28 7.26 16 44 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 47 H 0.09 1.09 7.00 -51.92 -0.36 0.73 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -34.76 376.79 -7.95 -42.71 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.21 Total: 8.24 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.06 Total: -5.49 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.11 Total: -59.52 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.16 Total: -12.25 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.09 Total: 20.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.76 -7.95 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185132169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.615 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds