Wall clock time and date at job start Tue Mar 31 2020 17:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38002 * 120.82273 * 2 1 4 4 C 1.39123 * 119.26472 * 180.27159 * 3 2 1 5 5 O 1.35497 * 119.52325 * 179.71932 * 4 3 2 6 6 N 1.32440 * 120.95147 * 359.70188 * 4 3 2 7 7 C 1.31636 * 121.79639 * 0.02562 * 6 4 3 8 8 C 1.39559 * 120.62795 * 0.02562 * 7 6 4 9 9 C 1.47618 * 120.50009 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00220 * 126.02549 * 9 8 7 11 11 N 1.34787 * 119.99877 * 306.03146 * 9 8 7 12 12 C 1.46916 * 120.63043 * 354.22163 * 11 9 8 13 13 C 1.53190 * 108.77643 * 233.63418 * 12 11 9 14 14 C 1.53039 * 109.31414 * 305.36338 * 13 12 11 15 15 H 1.08998 * 109.44869 * 301.35849 * 14 13 12 16 16 C 1.52995 * 109.46644 * 181.38398 * 14 13 12 17 17 N 1.46502 * 109.47084 * 64.93320 * 16 14 13 18 18 C 1.36936 * 120.00329 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99867 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99934 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47207 * 270.00027 * 22 20 18 24 24 H 1.48503 * 109.46927 * 30.00184 * 22 20 18 25 25 H 1.48493 * 109.46957 * 149.99980 * 22 20 18 26 26 C 1.53051 * 109.53528 * 61.36315 * 14 13 12 27 27 H 1.08991 * 109.49440 * 178.65232 * 26 14 13 28 28 C 1.53001 * 109.49198 * 58.58835 * 26 14 13 29 29 C 1.46926 * 120.63041 * 174.24736 * 11 9 8 30 30 H 1.08998 * 109.47692 * 275.17040 * 1 2 3 31 31 H 1.08996 * 109.47273 * 35.17079 * 1 2 3 32 32 H 1.09005 * 109.47218 * 155.16655 * 1 2 3 33 33 H 1.08004 * 120.36256 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00179 * 269.97908 * 5 4 3 35 35 H 1.08004 * 119.68185 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.58877 * 353.42267 * 12 11 9 37 37 H 1.08997 * 109.58872 * 113.69875 * 12 11 9 38 38 H 1.09007 * 109.50024 * 185.41372 * 13 12 11 39 39 H 1.09002 * 109.49930 * 65.32002 * 13 12 11 40 40 H 1.09003 * 109.46895 * 304.94087 * 16 14 13 41 41 H 1.08991 * 109.47923 * 184.93334 * 16 14 13 42 42 H 0.97007 * 119.99553 * 359.97438 * 17 16 14 43 43 H 0.96999 * 120.00349 * 359.97438 * 21 20 18 44 44 H 1.08997 * 109.47495 * 60.00282 * 28 26 14 45 45 H 1.09004 * 109.46739 * 179.97438 * 28 26 14 46 46 H 1.08992 * 109.47533 * 299.99626 * 28 26 14 47 47 H 1.09011 * 109.58480 * 6.57947 * 29 11 9 48 48 H 1.08994 * 109.70221 * 246.22552 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3042 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0053 7 6 3.6204 -1.1600 0.0001 8 6 2.2256 -1.2043 0.0050 9 6 1.5171 -2.4994 0.0104 10 8 0.6850 -2.7335 0.8654 11 7 1.7928 -3.4223 -0.9324 12 6 2.7009 -3.1088 -2.0439 13 6 1.9896 -3.4198 -3.3645 14 6 1.4968 -4.8686 -3.3451 15 1 2.3442 -5.5381 -3.1975 16 6 0.8161 -5.1935 -4.6761 17 7 1.8031 -5.1328 -5.7570 18 6 1.4222 -5.3884 -7.0473 19 1 0.3942 -5.6352 -7.2680 20 6 2.3575 -5.3314 -8.0713 21 7 3.6105 -5.0311 -7.8022 22 14 1.8381 -5.6808 -9.8313 23 1 1.9861 -7.1314 -10.1124 24 1 0.4195 -5.2828 -10.0170 25 1 2.6957 -4.9059 -10.7636 26 6 0.4960 -5.0535 -2.2020 27 1 0.1274 -6.0792 -2.2036 28 6 -0.6769 -4.0890 -2.3895 29 6 1.1904 -4.7609 -0.8683 30 1 -0.3634 0.0926 1.0234 31 1 -0.3633 0.8400 -0.5919 32 1 -0.3634 -0.9327 -0.4316 33 1 1.6935 2.1314 0.0004 34 1 4.5038 2.6423 -0.8966 35 1 4.1849 -2.0808 0.0007 36 1 2.9664 -2.0520 -2.0119 37 1 3.6031 -3.7148 -1.9608 38 1 2.6845 -3.2830 -4.1931 39 1 1.1399 -2.7481 -3.4871 40 1 0.0245 -4.4685 -4.8659 41 1 0.3883 -6.1950 -4.6306 42 1 2.7264 -4.9108 -5.5588 43 1 3.8802 -4.8493 -6.8884 44 1 -1.1690 -4.2957 -3.3399 45 1 -1.3897 -4.2214 -1.5754 46 1 -0.3081 -3.0634 -2.3867 47 1 0.4592 -4.7943 -0.0606 48 1 1.9666 -5.5050 -0.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185132169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:40 Heat of formation + Delta-G solvation = -57.646532 kcal Electronic energy + Delta-G solvation = -29498.667029 eV Core-core repulsion = 25552.858127 eV Total energy + Delta-G solvation = -3945.808902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22588 -41.01281 -39.38513 -38.05674 -36.85689 -35.14873 -34.93439 -33.34976 -31.91108 -31.62327 -29.15015 -28.37200 -27.80004 -25.69838 -25.07404 -24.25111 -23.57987 -22.95856 -21.38291 -19.78040 -19.45968 -19.24102 -18.75565 -18.12814 -17.31211 -16.92541 -16.79907 -16.32889 -16.10624 -15.71503 -15.56319 -15.37959 -15.27596 -14.91016 -14.68330 -14.49340 -14.25192 -14.12415 -13.94097 -13.75520 -13.57494 -13.54508 -13.15259 -12.80808 -12.76880 -12.70775 -12.62943 -12.48900 -12.14289 -11.90191 -11.78856 -11.52157 -11.47010 -11.19609 -11.13232 -10.89822 -10.70774 -10.52713 -10.06206 -9.71941 -9.07524 -8.38474 -5.31719 -0.45375 0.01510 1.43487 1.58780 1.68818 1.82024 1.83196 2.38939 2.60482 2.71269 3.24357 3.40534 3.46554 3.51779 3.61231 3.66793 3.75381 3.87648 3.97453 4.10714 4.14940 4.18950 4.29704 4.31966 4.36835 4.54131 4.58890 4.61463 4.63220 4.65187 4.71101 4.76013 4.77234 4.89975 4.96091 4.99590 5.07189 5.10154 5.11923 5.18480 5.25009 5.34115 5.42962 5.54071 5.59948 6.22227 6.49655 6.52170 6.74062 6.95063 7.11984 8.02885 8.13261 9.13871 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002977 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.526781 B = 9402.581157 C =10592.976077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.014 3.986 3 C -0.185 4.185 4 C 0.326 3.674 5 O -0.488 6.488 6 N -0.530 5.530 7 C 0.163 3.837 8 C -0.208 4.208 9 C 0.574 3.426 10 O -0.561 6.561 11 N -0.593 5.593 12 C 0.112 3.888 13 C -0.119 4.119 14 C -0.079 4.079 15 H 0.071 0.929 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.335 4.335 19 H 0.061 0.939 20 C -0.101 4.101 21 N -0.974 5.974 22 Si 1.127 2.873 23 H -0.285 1.285 24 H -0.275 1.275 25 H -0.292 1.292 26 C -0.090 4.090 27 H 0.093 0.907 28 C -0.140 4.140 29 C 0.119 3.881 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.174 0.826 34 H 0.425 0.575 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.362 0.638 43 H 0.245 0.755 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 11.072 18.003 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.006 3.994 3 C -0.206 4.206 4 C 0.148 3.852 5 O -0.299 6.299 6 N -0.250 5.250 7 C 0.005 3.995 8 C -0.213 4.213 9 C 0.362 3.638 10 O -0.441 6.441 11 N -0.325 5.325 12 C -0.010 4.010 13 C -0.157 4.157 14 C -0.098 4.098 15 H 0.089 0.911 16 C 0.038 3.962 17 N -0.399 5.399 18 C -0.466 4.466 19 H 0.079 0.921 20 C -0.293 4.293 21 N -0.622 5.622 22 Si 0.953 3.047 23 H -0.212 1.212 24 H -0.201 1.201 25 H -0.218 1.218 26 C -0.109 4.109 27 H 0.111 0.889 28 C -0.197 4.197 29 C -0.003 4.003 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.192 0.808 34 H 0.288 0.712 35 H 0.195 0.805 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.195 0.805 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.671 10.832 17.427 20.845 hybrid contribution -0.800 0.107 0.907 1.214 sum -4.471 10.940 18.333 21.813 Atomic orbital electron populations 1.20917 0.88316 1.03862 1.04207 1.20470 0.97921 0.90811 0.90164 1.22140 0.93295 1.00172 1.04960 1.19564 0.87717 0.85328 0.92558 1.84669 1.75808 1.33336 1.36129 1.67222 1.42583 0.98863 1.16309 1.22875 0.89808 0.95728 0.91118 1.20859 0.95780 0.94238 1.10425 1.18067 0.81361 0.83330 0.81036 1.90771 1.34591 1.79664 1.39040 1.48046 1.46380 1.13319 1.24719 1.21899 0.92387 1.02303 0.84424 1.21821 1.00528 0.96589 0.96756 1.21208 0.98218 0.96693 0.93640 0.91082 1.20768 0.91483 0.96951 0.86957 1.42574 1.08049 1.85510 1.03746 1.20383 0.96155 1.43242 0.86824 0.92059 1.27109 0.93752 1.00793 1.07642 1.70964 1.17602 1.52822 1.20807 0.82618 0.74829 0.76440 0.70859 1.21223 1.20085 1.21850 1.21407 0.95241 1.00983 0.93316 0.88852 1.21798 0.97443 0.99003 1.01431 1.21751 0.98383 0.82434 0.97690 0.89129 0.88201 0.92301 0.80825 0.71235 0.80500 0.89320 0.89214 0.92111 0.91988 0.96495 0.96848 0.80486 0.94411 0.93076 0.92111 0.93411 0.89009 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.36 71.23 0.67 -1.22 16 2 C 0.01 0.27 5.94 -19.43 -0.12 0.15 16 3 C -0.18 -2.92 9.74 22.43 0.22 -2.71 16 4 C 0.33 6.13 7.74 84.81 0.66 6.79 16 5 O -0.49 -7.44 13.55 -87.98 -1.19 -8.63 16 6 N -0.53 -11.70 10.37 -307.80 -3.19 -14.89 16 7 C 0.16 3.30 8.96 85.04 0.76 4.06 16 8 C -0.21 -4.41 4.61 -19.99 -0.09 -4.50 16 9 C 0.57 13.66 6.16 86.72 0.53 14.19 16 10 O -0.56 -16.38 15.49 -3.96 -0.06 -16.45 16 11 N -0.59 -12.70 2.41 -822.58 -1.98 -14.68 16 12 C 0.11 2.34 5.59 86.36 0.48 2.82 16 13 C -0.12 -3.22 4.90 30.67 0.15 -3.07 16 14 C -0.08 -2.24 1.96 -10.77 -0.02 -2.26 16 15 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.16 6.33 5.19 86.38 0.45 6.78 16 17 N -0.75 -37.04 5.32 -343.47 -1.83 -38.86 16 18 C -0.33 -18.71 9.99 84.03 0.84 -17.87 16 19 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 20 C -0.10 -5.82 5.50 84.86 0.47 -5.36 16 21 N -0.97 -59.80 13.70 21.65 0.30 -59.50 16 22 Si 1.13 51.53 29.92 68.60 2.05 53.58 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 C -0.09 -2.06 2.72 -10.71 -0.03 -2.09 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 C -0.14 -3.32 8.38 71.98 0.60 -2.72 16 29 C 0.12 2.46 5.84 86.36 0.50 2.96 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.10 8.13 -2.39 -0.02 1.09 16 32 H 0.06 1.18 6.71 -2.38 -0.02 1.16 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.43 2.24 9.06 -74.06 -0.67 1.57 16 35 H 0.18 2.93 7.76 -2.91 -0.02 2.91 16 36 H 0.09 1.75 5.39 -2.38 -0.01 1.73 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.95 7.15 -2.38 -0.02 1.94 16 39 H 0.06 1.76 6.34 -2.39 -0.02 1.75 16 40 H 0.02 0.68 6.74 -2.39 -0.02 0.66 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.36 18.15 5.68 -92.70 -0.53 17.63 16 43 H 0.25 14.89 6.77 -92.71 -0.63 14.26 16 44 H 0.05 1.32 6.58 -2.39 -0.02 1.30 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 1.19 5.97 -2.39 -0.01 1.18 16 47 H 0.09 2.00 7.00 -2.38 -0.02 1.98 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -74.37 376.79 0.12 -74.26 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.05 Total: 29.21 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.07 Total: -4.04 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.70 Total: -127.93 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.25 Total: -25.07 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -74.37 0.12 -74.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185132169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.610 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds