Wall clock time and date at job start Tue Mar 31 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37996 * 120.81958 * 2 1 4 4 C 1.39128 * 119.26415 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52573 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.95006 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79644 * 0.02562 * 6 4 3 8 8 C 1.39556 * 120.62706 * 359.97438 * 7 6 4 9 9 C 1.47621 * 120.49797 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00164 * 234.45896 * 9 8 7 11 11 N 1.34782 * 119.99608 * 54.45798 * 9 8 7 12 12 C 1.46916 * 120.63258 * 5.29630 * 11 9 8 13 13 C 1.53625 * 108.54633 * 126.37011 * 12 11 9 14 14 C 1.53044 * 109.23871 * 54.85146 * 13 12 11 15 15 H 1.09001 * 109.44763 * 58.53221 * 14 13 12 16 16 C 1.53008 * 109.45664 * 178.49375 * 14 13 12 17 17 N 1.46499 * 109.46920 * 295.06979 * 16 14 13 18 18 C 1.36944 * 119.99599 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99738 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99407 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00288 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47280 * 90.00049 * 22 20 18 24 24 H 1.48500 * 109.47453 * 210.00310 * 22 20 18 25 25 H 1.48507 * 109.46996 * 330.00388 * 22 20 18 26 26 C 1.53036 * 109.54178 * 298.51627 * 14 13 12 27 27 H 1.09000 * 109.49551 * 301.41251 * 26 14 13 28 28 C 1.52997 * 109.52491 * 181.33350 * 26 14 13 29 29 C 1.46930 * 120.62744 * 185.57948 * 11 9 8 30 30 H 1.09001 * 109.46801 * 274.88435 * 1 2 3 31 31 H 1.08998 * 109.46993 * 34.88500 * 1 2 3 32 32 H 1.08996 * 109.46907 * 154.88692 * 1 2 3 33 33 H 1.08001 * 120.36853 * 0.03858 * 3 2 1 34 34 H 0.96701 * 114.00028 * 90.00038 * 5 4 3 35 35 H 1.08003 * 119.68132 * 180.26835 * 7 6 4 36 36 H 1.09004 * 109.58976 * 246.19926 * 12 11 9 37 37 H 1.09001 * 109.59181 * 6.62660 * 12 11 9 38 38 H 1.09000 * 109.63014 * 294.87006 * 13 12 11 39 39 H 1.08998 * 109.46246 * 174.74111 * 13 12 11 40 40 H 1.08997 * 109.47042 * 55.07429 * 16 14 13 41 41 H 1.09003 * 109.46805 * 175.06829 * 16 14 13 42 42 H 0.96990 * 120.00257 * 0.02562 * 17 16 14 43 43 H 0.97000 * 119.99502 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.47551 * 300.14607 * 28 26 14 45 45 H 1.09006 * 109.47044 * 60.14807 * 28 26 14 46 46 H 1.09005 * 109.47039 * 180.14461 * 28 26 14 47 47 H 1.09002 * 109.58420 * 353.36550 * 29 11 9 48 48 H 1.08995 * 109.59164 * 113.79870 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2549 -0.0066 -0.0005 7 6 3.6205 -1.1600 -0.0005 8 6 2.2256 -1.2043 0.0000 9 6 1.5172 -2.4994 0.0006 10 8 0.6882 -2.7392 -0.8558 11 7 1.7895 -3.4160 0.9505 12 6 2.7017 -3.0985 2.0575 13 6 1.9844 -3.3971 3.3827 14 6 1.4885 -4.8449 3.3728 15 1 2.3346 -5.5173 3.2307 16 6 0.8060 -5.1591 4.7057 17 7 1.7924 -5.0930 5.7868 18 6 1.4099 -5.3388 7.0786 19 1 0.3811 -5.5818 7.3002 20 6 2.3444 -5.2756 8.1031 21 7 1.9767 -5.5123 9.3446 22 14 4.1237 -4.8560 7.7198 23 1 4.3122 -3.3848 7.7925 24 1 5.0125 -5.5184 8.7079 25 1 4.4612 -5.3312 6.3538 26 6 0.4883 -5.0356 2.2304 27 1 -0.3460 -4.3459 2.3584 28 6 -0.0322 -6.4743 2.2412 29 6 1.1844 -4.7538 0.8952 30 1 -0.3633 0.0875 1.0240 31 1 -0.3633 0.8430 -0.5877 32 1 -0.3633 -0.9305 -0.4361 33 1 1.6936 2.1314 0.0006 34 1 4.5077 2.6448 0.8822 35 1 4.1850 -2.0808 0.0038 36 1 3.5994 -3.7118 1.9786 37 1 2.9727 -2.0435 2.0167 38 1 1.1360 -2.7228 3.4999 39 1 2.6784 -3.2558 4.2112 40 1 0.0158 -4.4313 4.8897 41 1 0.3762 -6.1600 4.6667 42 1 2.7162 -4.8744 5.5879 43 1 2.6298 -5.4685 10.0604 44 1 0.8024 -7.1636 2.1144 45 1 -0.5275 -6.6743 3.1915 46 1 -0.7426 -6.6098 1.4257 47 1 0.4537 -4.7912 0.0872 48 1 1.9608 -5.4992 0.7234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185132171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:44 Heat of formation + Delta-G solvation = -30.596842 kcal Electronic energy + Delta-G solvation = -29292.710479 eV Core-core repulsion = 25348.074540 eV Total energy + Delta-G solvation = -3944.635940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38989 -40.05594 -38.32776 -37.34606 -35.29194 -34.25044 -33.78716 -32.12833 -31.02768 -30.70822 -28.46866 -27.27523 -26.78767 -24.70419 -23.50475 -22.71347 -22.57571 -21.30716 -20.38407 -19.54293 -18.79389 -17.97441 -17.58547 -17.26131 -16.48276 -16.21715 -15.21242 -15.02674 -14.91790 -14.73630 -14.41983 -14.23581 -14.05432 -13.62942 -13.60727 -13.36562 -13.17518 -13.15280 -12.98597 -12.68890 -12.51115 -12.43694 -12.12217 -12.06478 -11.98710 -11.77034 -11.37858 -11.04883 -10.93531 -10.56852 -10.53399 -10.35485 -10.19289 -10.08228 -9.98312 -9.73314 -9.61614 -9.32164 -8.93043 -8.79463 -7.25371 -5.80144 -3.15468 0.27346 0.72479 2.29887 2.65671 3.06807 3.29956 3.32375 3.34075 3.41340 4.04825 4.15485 4.23517 4.54999 4.56389 4.62898 4.72852 4.76071 4.84270 4.91053 5.01684 5.12677 5.18849 5.24764 5.26425 5.33167 5.33768 5.49561 5.54920 5.59016 5.62822 5.66288 5.71482 5.73807 5.84640 5.87112 5.98771 6.06467 6.11334 6.15725 6.27567 6.32875 6.38178 6.69006 6.76552 7.00994 7.10719 7.40665 7.83580 7.96525 8.39049 9.18189 9.90428 10.10226 11.38491 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003316 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.370159 B = 8442.448380 C = 9991.987233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.023 3.977 3 C -0.192 4.192 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.164 3.836 8 C -0.193 4.193 9 C 0.571 3.429 10 O -0.533 6.533 11 N -0.599 5.599 12 C 0.101 3.899 13 C -0.126 4.126 14 C -0.094 4.094 15 H 0.073 0.927 16 C 0.161 3.839 17 N -0.755 5.755 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.096 4.096 27 H 0.075 0.925 28 C -0.148 4.148 29 C 0.117 3.883 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.166 0.834 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.025 0.975 41 H 0.033 0.967 42 H 0.359 0.641 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 10.794 -21.013 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.015 3.985 3 C -0.213 4.213 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.225 5.225 7 C 0.005 3.995 8 C -0.198 4.198 9 C 0.358 3.642 10 O -0.411 6.411 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.164 4.164 14 C -0.113 4.113 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.116 4.116 27 H 0.094 0.906 28 C -0.206 4.206 29 C -0.005 4.005 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.165 0.835 34 H 0.264 0.736 35 H 0.183 0.817 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.051 0.949 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.111 0.889 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.522 10.641 -21.860 24.318 hybrid contribution 0.727 0.474 0.540 1.022 sum 1.249 11.115 -21.320 24.076 Atomic orbital electron populations 1.21111 0.89132 1.05442 1.03548 1.20228 0.97331 0.90652 0.90274 1.21952 0.93760 0.99545 1.06012 1.19336 0.87092 0.85247 0.93089 1.84718 1.75916 1.34015 1.34264 1.67198 1.41864 0.98198 1.15282 1.22701 0.89873 0.95375 0.91544 1.20832 0.95471 0.94462 1.09028 1.17948 0.81825 0.83037 0.81390 1.90767 1.33583 1.78769 1.37988 1.48101 1.46449 1.13719 1.24864 1.22085 0.92428 1.01434 0.86234 1.22017 1.01144 0.97430 0.95826 1.21413 0.98294 0.96046 0.95530 0.90890 1.20733 0.91990 0.98522 0.85365 1.42729 1.06941 1.86362 1.04088 1.19063 0.96571 1.39856 0.81825 0.89284 1.24675 0.97528 1.01836 0.95158 1.69703 1.33749 1.56048 0.98770 0.86568 0.86584 0.78215 0.77278 1.21103 1.21702 1.20339 1.21439 0.98207 0.98201 0.93704 0.90636 1.21840 1.01119 0.95046 1.02556 1.21788 0.97971 0.81938 0.98805 0.89876 0.90307 0.88715 0.83461 0.73621 0.81694 0.90717 0.90057 0.91289 0.89917 0.95706 0.94919 0.80762 0.93058 0.92458 0.91120 0.92809 0.88854 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.75 36.01 0.35 -0.81 16 2 C 0.02 0.23 5.94 -103.96 -0.62 -0.39 16 3 C -0.19 -1.65 9.74 -39.34 -0.38 -2.03 16 4 C 0.33 3.25 7.74 -16.96 -0.13 3.12 16 5 O -0.48 -3.95 13.55 -18.18 -0.25 -4.19 16 6 N -0.51 -5.64 10.37 -12.97 -0.13 -5.77 16 7 C 0.16 1.66 8.96 -17.14 -0.15 1.50 16 8 C -0.19 -2.06 4.60 -104.82 -0.48 -2.54 16 9 C 0.57 6.83 6.58 -12.43 -0.08 6.75 16 10 O -0.53 -7.77 14.62 5.30 0.08 -7.69 16 11 N -0.60 -6.50 2.97 -173.70 -0.52 -7.02 16 12 C 0.10 1.03 5.63 -3.49 -0.02 1.01 16 13 C -0.13 -1.60 5.26 -26.38 -0.14 -1.73 16 14 C -0.09 -1.27 1.73 -90.57 -0.16 -1.43 16 15 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 16 C 0.16 2.89 5.41 -4.04 -0.02 2.87 16 17 N -0.76 -17.08 5.12 -59.90 -0.31 -17.39 16 18 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 19 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 22 Si 0.88 21.49 27.73 -169.99 -4.71 16.78 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 26 C -0.10 -1.09 2.41 -90.50 -0.22 -1.31 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 C -0.15 -1.58 8.82 37.16 0.33 -1.25 16 29 C 0.12 1.24 5.72 -3.71 -0.02 1.22 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.09 1.01 5.72 -51.93 -0.30 0.71 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.40 1.31 9.06 45.56 0.41 1.72 16 35 H 0.17 1.36 7.77 -52.48 -0.41 0.96 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.78 5.38 -51.93 -0.28 0.50 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.60 6.14 -51.93 -0.32 0.28 16 42 H 0.36 7.86 4.70 -40.82 -0.19 7.66 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.84 6.31 -51.93 -0.33 0.51 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 1.05 7.00 -51.93 -0.36 0.68 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.61 378.40 -7.75 -42.36 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.38 Total: 7.40 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.00 Total: -1.92 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.18 Total: -58.43 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.17 Total: -11.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.61 -7.75 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185132171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.764 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds