Wall clock time and date at job start Tue Mar 31 2020 17:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37996 * 120.81958 * 2 1 4 4 C 1.39128 * 119.26415 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52573 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.95006 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79644 * 0.02562 * 6 4 3 8 8 C 1.39556 * 120.62706 * 359.97438 * 7 6 4 9 9 C 1.47621 * 120.49797 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00164 * 234.45896 * 9 8 7 11 11 N 1.34782 * 119.99608 * 54.45798 * 9 8 7 12 12 C 1.46916 * 120.63258 * 5.29630 * 11 9 8 13 13 C 1.53625 * 108.54633 * 126.37011 * 12 11 9 14 14 C 1.53044 * 109.23871 * 54.85146 * 13 12 11 15 15 H 1.09001 * 109.44763 * 58.53221 * 14 13 12 16 16 C 1.53008 * 109.45664 * 178.49375 * 14 13 12 17 17 N 1.46499 * 109.46920 * 295.06979 * 16 14 13 18 18 C 1.36944 * 119.99599 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99738 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99407 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00288 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47280 * 90.00049 * 22 20 18 24 24 H 1.48500 * 109.47453 * 210.00310 * 22 20 18 25 25 H 1.48507 * 109.46996 * 330.00388 * 22 20 18 26 26 C 1.53036 * 109.54178 * 298.51627 * 14 13 12 27 27 H 1.09000 * 109.49551 * 301.41251 * 26 14 13 28 28 C 1.52997 * 109.52491 * 181.33350 * 26 14 13 29 29 C 1.46930 * 120.62744 * 185.57948 * 11 9 8 30 30 H 1.09001 * 109.46801 * 274.88435 * 1 2 3 31 31 H 1.08998 * 109.46993 * 34.88500 * 1 2 3 32 32 H 1.08996 * 109.46907 * 154.88692 * 1 2 3 33 33 H 1.08001 * 120.36853 * 0.03858 * 3 2 1 34 34 H 0.96701 * 114.00028 * 90.00038 * 5 4 3 35 35 H 1.08003 * 119.68132 * 180.26835 * 7 6 4 36 36 H 1.09004 * 109.58976 * 246.19926 * 12 11 9 37 37 H 1.09001 * 109.59181 * 6.62660 * 12 11 9 38 38 H 1.09000 * 109.63014 * 294.87006 * 13 12 11 39 39 H 1.08998 * 109.46246 * 174.74111 * 13 12 11 40 40 H 1.08997 * 109.47042 * 55.07429 * 16 14 13 41 41 H 1.09003 * 109.46805 * 175.06829 * 16 14 13 42 42 H 0.96990 * 120.00257 * 0.02562 * 17 16 14 43 43 H 0.97000 * 119.99502 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.47551 * 300.14607 * 28 26 14 45 45 H 1.09006 * 109.47044 * 60.14807 * 28 26 14 46 46 H 1.09005 * 109.47039 * 180.14461 * 28 26 14 47 47 H 1.09002 * 109.58420 * 353.36550 * 29 11 9 48 48 H 1.08995 * 109.59164 * 113.79870 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2549 -0.0066 -0.0005 7 6 3.6205 -1.1600 -0.0005 8 6 2.2256 -1.2043 0.0000 9 6 1.5172 -2.4994 0.0006 10 8 0.6882 -2.7392 -0.8558 11 7 1.7895 -3.4160 0.9505 12 6 2.7017 -3.0985 2.0575 13 6 1.9844 -3.3971 3.3827 14 6 1.4885 -4.8449 3.3728 15 1 2.3346 -5.5173 3.2307 16 6 0.8060 -5.1591 4.7057 17 7 1.7924 -5.0930 5.7868 18 6 1.4099 -5.3388 7.0786 19 1 0.3811 -5.5818 7.3002 20 6 2.3444 -5.2756 8.1031 21 7 1.9767 -5.5123 9.3446 22 14 4.1237 -4.8560 7.7198 23 1 4.3122 -3.3848 7.7925 24 1 5.0125 -5.5184 8.7079 25 1 4.4612 -5.3312 6.3538 26 6 0.4883 -5.0356 2.2304 27 1 -0.3460 -4.3459 2.3584 28 6 -0.0322 -6.4743 2.2412 29 6 1.1844 -4.7538 0.8952 30 1 -0.3633 0.0875 1.0240 31 1 -0.3633 0.8430 -0.5877 32 1 -0.3633 -0.9305 -0.4361 33 1 1.6936 2.1314 0.0006 34 1 4.5077 2.6448 0.8822 35 1 4.1850 -2.0808 0.0038 36 1 3.5994 -3.7118 1.9786 37 1 2.9727 -2.0435 2.0167 38 1 1.1360 -2.7228 3.4999 39 1 2.6784 -3.2558 4.2112 40 1 0.0158 -4.4313 4.8897 41 1 0.3762 -6.1600 4.6667 42 1 2.7162 -4.8744 5.5879 43 1 2.6298 -5.4685 10.0604 44 1 0.8024 -7.1636 2.1144 45 1 -0.5275 -6.6743 3.1915 46 1 -0.7426 -6.6098 1.4257 47 1 0.4537 -4.7912 0.0872 48 1 1.9608 -5.4992 0.7234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185132171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:43 Heat of formation + Delta-G solvation = -57.056821 kcal Electronic energy + Delta-G solvation = -29293.857870 eV Core-core repulsion = 25348.074540 eV Total energy + Delta-G solvation = -3945.783330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16994 -40.89568 -39.33071 -38.04531 -36.73313 -35.12899 -34.92628 -33.62598 -32.34697 -31.72950 -29.17961 -28.62610 -27.64579 -25.75622 -24.83567 -23.72124 -23.42936 -22.65676 -21.41176 -20.50561 -19.62288 -19.44250 -18.68533 -18.06762 -17.37027 -16.91199 -16.65555 -16.22258 -15.90393 -15.70534 -15.60684 -15.40577 -14.95155 -14.76990 -14.61738 -14.58839 -14.19990 -14.10833 -14.00356 -13.80851 -13.48433 -13.24831 -13.17402 -13.13241 -12.91157 -12.82507 -12.75770 -12.68374 -12.17065 -11.99414 -11.84470 -11.64320 -11.51607 -11.24454 -11.19479 -10.92978 -10.68316 -10.50347 -10.04647 -9.70801 -9.26050 -8.01525 -5.34794 -0.44059 0.03152 1.38131 1.42672 1.43455 1.50387 1.83473 2.40205 2.49900 2.61431 3.26695 3.30072 3.48931 3.53729 3.54306 3.70600 3.80702 3.88859 3.97594 4.05574 4.15762 4.26424 4.35038 4.37378 4.48622 4.57367 4.61102 4.62633 4.64892 4.67640 4.73063 4.79714 4.82263 4.96759 4.99626 5.07784 5.09596 5.16431 5.21804 5.25641 5.35770 5.35996 5.47250 5.58154 5.77480 6.22334 6.23662 6.50904 6.75321 6.95725 7.10010 7.85967 8.06255 9.20379 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003316 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.370159 B = 8442.448380 C = 9991.987233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.016 3.984 3 C -0.186 4.186 4 C 0.326 3.674 5 O -0.489 6.489 6 N -0.529 5.529 7 C 0.164 3.836 8 C -0.207 4.207 9 C 0.573 3.427 10 O -0.564 6.564 11 N -0.597 5.597 12 C 0.108 3.892 13 C -0.124 4.124 14 C -0.083 4.083 15 H 0.081 0.919 16 C 0.159 3.841 17 N -0.755 5.755 18 C -0.235 4.235 19 H 0.052 0.948 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.955 3.045 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.245 1.245 26 C -0.087 4.087 27 H 0.065 0.935 28 C -0.146 4.146 29 C 0.120 3.880 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.425 0.575 35 H 0.181 0.819 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.014 0.986 41 H 0.030 0.970 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 11.855 -23.106 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 C -0.207 4.207 4 C 0.149 3.851 5 O -0.300 6.300 6 N -0.249 5.249 7 C 0.006 3.994 8 C -0.213 4.213 9 C 0.362 3.638 10 O -0.444 6.444 11 N -0.328 5.328 12 C -0.014 4.014 13 C -0.163 4.163 14 C -0.102 4.102 15 H 0.099 0.901 16 C 0.033 3.967 17 N -0.401 5.401 18 C -0.366 4.366 19 H 0.070 0.930 20 C -0.257 4.257 21 N -0.637 5.637 22 Si 0.782 3.218 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.170 1.170 26 C -0.106 4.106 27 H 0.083 0.917 28 C -0.203 4.203 29 C -0.001 4.001 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.190 0.810 34 H 0.288 0.712 35 H 0.198 0.802 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.048 0.952 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.274 11.716 -23.987 26.792 hybrid contribution 0.050 0.178 1.208 1.222 sum 2.324 11.893 -22.779 25.802 Atomic orbital electron populations 1.21090 0.88563 1.05062 1.04154 1.20450 0.97892 0.90836 0.90062 1.22137 0.93366 1.00147 1.05044 1.19554 0.87681 0.85365 0.92523 1.84672 1.75766 1.33369 1.36179 1.67232 1.42511 0.98825 1.16318 1.22897 0.89688 0.95774 0.91022 1.20810 0.95822 0.94130 1.10506 1.18117 0.81317 0.83395 0.81007 1.90752 1.35025 1.79375 1.39275 1.48129 1.46279 1.13626 1.24724 1.22082 0.92404 1.02552 0.84355 1.21961 1.00809 0.96452 0.97031 1.21308 0.98583 0.96900 0.93417 0.90071 1.20880 0.91335 0.98039 0.86474 1.42689 1.08148 1.86033 1.03195 1.19031 0.95014 1.38316 0.84197 0.93026 1.25550 1.02804 1.02570 0.94796 1.69902 1.35463 1.58258 1.00127 0.85406 0.79874 0.78176 0.78361 1.20189 1.22514 1.16955 1.21335 0.97379 0.98504 0.93428 0.91665 1.21812 1.01667 0.94616 1.02247 1.21775 0.98390 0.82299 0.97675 0.89134 0.88369 0.90939 0.81023 0.71243 0.80216 0.88632 0.89128 0.92208 0.91005 0.96814 0.95165 0.79913 0.93384 0.91626 0.92792 0.91290 0.89329 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.75 71.24 0.69 -1.37 16 2 C 0.02 0.28 5.94 -19.43 -0.12 0.16 16 3 C -0.19 -2.77 9.74 22.43 0.22 -2.55 16 4 C 0.33 5.71 7.74 84.82 0.66 6.37 16 5 O -0.49 -6.89 13.55 -87.96 -1.19 -8.08 16 6 N -0.53 -10.74 10.37 -307.80 -3.19 -13.93 16 7 C 0.16 3.00 8.96 85.04 0.76 3.76 16 8 C -0.21 -4.09 4.60 -20.00 -0.09 -4.19 16 9 C 0.57 12.91 6.58 86.72 0.57 13.49 16 10 O -0.56 -16.06 14.62 -3.96 -0.06 -16.11 16 11 N -0.60 -11.69 2.97 -821.73 -2.44 -14.13 16 12 C 0.11 1.91 5.63 86.51 0.49 2.39 16 13 C -0.12 -2.91 5.26 30.82 0.16 -2.74 16 14 C -0.08 -2.10 1.73 -10.76 -0.02 -2.12 16 15 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 16 C 0.16 5.64 5.41 86.38 0.47 6.10 16 17 N -0.75 -33.56 5.12 -343.43 -1.76 -35.32 16 18 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 19 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.99 -62.92 13.97 21.65 0.30 -62.61 16 22 Si 0.96 43.85 27.73 68.60 1.90 45.75 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.25 -9.86 6.52 99.48 0.65 -9.21 16 26 C -0.09 -1.84 2.41 -10.72 -0.03 -1.87 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.15 -2.89 8.82 71.98 0.63 -2.26 16 29 C 0.12 2.28 5.72 86.36 0.49 2.78 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.07 1.50 5.72 -2.39 -0.01 1.49 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.43 1.73 9.06 -74.06 -0.67 1.06 16 35 H 0.18 2.53 7.77 -2.91 -0.02 2.51 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.49 5.38 -2.39 -0.01 1.47 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.87 7.15 -2.39 -0.02 1.85 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.03 1.11 6.14 -2.39 -0.01 1.10 16 42 H 0.37 15.20 4.70 -92.72 -0.44 14.77 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.25 6.31 -2.38 -0.02 1.24 16 46 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.09 1.84 7.00 -2.39 -0.02 1.82 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -76.14 378.40 -0.36 -76.50 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.17 Total: 25.67 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 6.24 Total: 2.27 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -7.09 Total: -125.99 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.25 Total: -24.19 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.75 kcal Total: -76.14 -0.36 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185132171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.441 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds