Wall clock time and date at job start Tue Mar 31 2020 17:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37998 * 120.81721 * 2 1 4 4 C 1.39127 * 119.26305 * 180.02562 * 3 2 1 5 5 O 1.35499 * 119.52492 * 179.97438 * 4 3 2 6 6 N 1.32435 * 120.94720 * 359.97438 * 4 3 2 7 7 C 1.31632 * 121.80180 * 359.72858 * 6 4 3 8 8 C 1.39562 * 120.62840 * 0.53575 * 7 6 4 9 9 C 1.47612 * 120.50583 * 179.74747 * 8 7 6 10 10 O 1.21578 * 120.00407 * 234.72069 * 9 8 7 11 11 N 1.34783 * 119.99639 * 54.71488 * 9 8 7 12 12 C 1.46931 * 120.62889 * 355.99399 * 11 9 8 13 13 C 1.53190 * 108.77480 * 126.41176 * 12 11 9 14 14 C 1.53036 * 109.34089 * 54.61743 * 13 12 11 15 15 H 1.09001 * 109.46085 * 58.66750 * 14 13 12 16 16 C 1.52995 * 109.46038 * 178.62829 * 14 13 12 17 17 N 1.46501 * 109.47500 * 295.00178 * 16 14 13 18 18 C 1.36933 * 120.00389 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00111 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00115 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99459 * 22 20 18 24 24 H 1.48499 * 109.47161 * 209.99908 * 22 20 18 25 25 H 1.48499 * 109.46857 * 329.99407 * 22 20 18 26 26 C 1.53038 * 109.53900 * 298.68310 * 14 13 12 27 27 H 1.08998 * 109.52526 * 181.30216 * 26 14 13 28 28 C 1.52998 * 109.47065 * 301.36495 * 26 14 13 29 29 C 1.46920 * 120.63275 * 176.01083 * 11 9 8 30 30 H 1.08995 * 109.47240 * 274.41049 * 1 2 3 31 31 H 1.09000 * 109.47174 * 34.41704 * 1 2 3 32 32 H 1.08999 * 109.47032 * 154.41209 * 1 2 3 33 33 H 1.08002 * 120.36877 * 0.04519 * 3 2 1 34 34 H 0.96700 * 114.00199 * 89.99562 * 5 4 3 35 35 H 1.07999 * 119.68986 * 180.26802 * 7 6 4 36 36 H 1.08999 * 109.58722 * 6.62330 * 12 11 9 37 37 H 1.09005 * 109.58130 * 246.19933 * 12 11 9 38 38 H 1.09001 * 109.49587 * 174.58379 * 13 12 11 39 39 H 1.08995 * 109.49315 * 294.64686 * 13 12 11 40 40 H 1.09005 * 109.47232 * 54.99821 * 16 14 13 41 41 H 1.08998 * 109.47201 * 174.99616 * 16 14 13 42 42 H 0.96999 * 119.99408 * 359.97438 * 17 16 14 43 43 H 0.97005 * 120.00021 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.47371 * 179.85366 * 28 26 14 45 45 H 1.09001 * 109.47167 * 299.85419 * 28 26 14 46 46 H 1.09001 * 109.47159 * 59.85415 * 28 26 14 47 47 H 1.09003 * 109.58363 * 353.37506 * 29 11 9 48 48 H 1.08999 * 109.58688 * 113.79745 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1474 -0.0005 5 8 4.3043 2.3079 -0.0011 6 7 4.2548 -0.0065 -0.0005 7 6 3.6205 -1.1599 0.0053 8 6 2.2256 -1.2044 0.0004 9 6 1.5172 -2.4994 0.0014 10 8 0.6950 -2.7432 -0.8604 11 7 1.7820 -3.4116 0.9576 12 6 2.8344 -3.1682 1.9535 13 6 2.2372 -3.3395 3.3538 14 6 1.5788 -4.7169 3.4590 15 1 2.3210 -5.4903 3.2609 16 6 1.0113 -4.9044 4.8674 17 7 2.1089 -4.9242 5.8376 18 6 1.8411 -5.0813 7.1713 19 1 0.8207 -5.1912 7.5079 20 6 2.8811 -5.1006 8.0904 21 7 2.6236 -5.2512 9.3724 22 14 4.6459 -4.9114 7.5082 23 1 5.0121 -3.4723 7.4976 24 1 5.5518 -5.6461 8.4273 25 1 4.7766 -5.4655 6.1367 26 6 0.4471 -4.8229 2.4343 27 1 -0.0366 -5.7954 2.5251 28 6 -0.5782 -3.7167 2.6906 29 6 1.0240 -4.6685 1.0236 30 1 -0.3633 0.0790 1.0246 31 1 -0.3633 0.8478 -0.5808 32 1 -0.3633 -0.9269 -0.4438 33 1 1.6935 2.1314 0.0007 34 1 4.5076 2.6450 0.8822 35 1 4.1849 -2.0807 0.0094 36 1 3.2166 -2.1536 1.8408 37 1 3.6443 -3.8838 1.8116 38 1 3.0281 -3.2564 4.0993 39 1 1.4904 -2.5649 3.5279 40 1 0.3360 -4.0809 5.0996 41 1 0.4657 -5.8466 4.9168 42 1 3.0253 -4.8259 5.5352 43 1 3.3504 -5.2643 10.0148 44 1 -1.3830 -3.7905 1.9592 45 1 -0.9884 -3.8269 3.6945 46 1 -0.0938 -2.7443 2.6009 47 1 0.2116 -4.6438 0.2973 48 1 1.6862 -5.5064 0.8058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185132174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:49 Heat of formation + Delta-G solvation = -52.225162 kcal Electronic energy + Delta-G solvation = -29617.080420 eV Core-core repulsion = 25671.506606 eV Total energy + Delta-G solvation = -3945.573814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22218 -40.96950 -39.36608 -38.04529 -36.73156 -35.06948 -34.83239 -33.50597 -32.27907 -31.61676 -29.15846 -28.73473 -27.78806 -25.72980 -24.81340 -24.20550 -23.48152 -22.77120 -21.37437 -20.02046 -19.46477 -19.26390 -18.71986 -18.06745 -17.26226 -16.93051 -16.68960 -16.36888 -15.99228 -15.72820 -15.53849 -15.32574 -15.03369 -14.76963 -14.73382 -14.65519 -14.16245 -14.10310 -13.89277 -13.79243 -13.56843 -13.44146 -13.25047 -13.14253 -12.86415 -12.75793 -12.67905 -12.45693 -12.18580 -12.03136 -11.84386 -11.57787 -11.46062 -11.29516 -11.11270 -10.92700 -10.67330 -10.49910 -10.02932 -9.67060 -9.26184 -8.01333 -5.34506 -0.43163 0.03184 1.38335 1.42815 1.45816 1.50415 1.86171 2.40228 2.50008 2.61794 3.27896 3.30395 3.48437 3.54027 3.56004 3.72919 3.79812 3.90545 4.00996 4.10181 4.16935 4.24588 4.35730 4.36826 4.43240 4.57491 4.62679 4.64698 4.65648 4.71431 4.76176 4.81207 4.83554 4.97052 5.00023 5.04962 5.14223 5.16338 5.20646 5.24659 5.29674 5.36508 5.48814 5.60129 5.77604 6.22632 6.26141 6.50849 6.75493 6.98558 7.10374 7.86595 8.06538 9.20537 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003385 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.642780 B = 8269.983279 C = 9598.042861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.016 3.984 3 C -0.186 4.186 4 C 0.325 3.675 5 O -0.489 6.489 6 N -0.530 5.530 7 C 0.161 3.839 8 C -0.207 4.207 9 C 0.574 3.426 10 O -0.564 6.564 11 N -0.592 5.592 12 C 0.104 3.896 13 C -0.126 4.126 14 C -0.083 4.083 15 H 0.080 0.920 16 C 0.161 3.839 17 N -0.755 5.755 18 C -0.234 4.234 19 H 0.052 0.948 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.955 3.045 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.246 1.246 26 C -0.090 4.090 27 H 0.094 0.906 28 C -0.143 4.143 29 C 0.120 3.880 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.425 0.575 35 H 0.181 0.819 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 11.629 -23.179 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 C -0.207 4.207 4 C 0.148 3.852 5 O -0.300 6.300 6 N -0.250 5.250 7 C 0.002 3.998 8 C -0.212 4.212 9 C 0.362 3.638 10 O -0.443 6.443 11 N -0.323 5.323 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.101 4.101 15 H 0.098 0.902 16 C 0.035 3.965 17 N -0.401 5.401 18 C -0.365 4.365 19 H 0.070 0.930 20 C -0.257 4.257 21 N -0.638 5.638 22 Si 0.782 3.218 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.170 1.170 26 C -0.110 4.110 27 H 0.113 0.887 28 C -0.200 4.200 29 C -0.002 4.002 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.190 0.810 34 H 0.287 0.713 35 H 0.198 0.802 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.224 11.508 -24.048 26.661 hybrid contribution 0.203 0.047 1.117 1.137 sum -0.021 11.554 -22.931 25.677 Atomic orbital electron populations 1.21087 0.88465 1.05099 1.04144 1.20439 0.97937 0.90755 0.90065 1.22140 0.93353 1.00182 1.05040 1.19554 0.87707 0.85349 0.92610 1.84669 1.75789 1.33387 1.36171 1.67215 1.42572 0.98846 1.16319 1.22927 0.89828 0.95781 0.91219 1.20840 0.95796 0.94304 1.10287 1.18045 0.81435 0.83224 0.81049 1.90755 1.36268 1.79183 1.38144 1.48067 1.36575 1.18705 1.28932 1.22094 0.89691 1.03416 0.86661 1.21918 1.00799 0.97383 0.96342 1.21261 0.97787 0.97754 0.93347 0.90198 1.20836 0.89955 0.97772 0.87949 1.42702 1.05057 1.89522 1.02832 1.19032 0.93571 1.40370 0.83569 0.93000 1.25541 1.02469 1.02586 0.95097 1.69899 1.32624 1.59260 1.01970 0.85410 0.79805 0.78092 0.78529 1.20193 1.22558 1.16998 1.21411 0.95486 1.00682 0.93418 0.88732 1.21831 0.98384 0.98382 1.01398 1.21754 0.96561 0.84968 0.96887 0.89124 0.88436 0.90806 0.81036 0.71274 0.80184 0.88952 0.88669 0.91261 0.91675 0.95911 0.96214 0.79922 0.93396 0.92297 0.93000 0.93148 0.89255 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.75 71.24 0.69 -1.31 16 2 C 0.02 0.28 5.95 -19.43 -0.12 0.17 16 3 C -0.19 -2.81 9.74 22.43 0.22 -2.59 16 4 C 0.33 5.81 7.74 84.82 0.66 6.47 16 5 O -0.49 -7.10 13.55 -88.01 -1.19 -8.29 16 6 N -0.53 -10.95 10.37 -307.81 -3.19 -14.14 16 7 C 0.16 2.97 8.62 85.04 0.73 3.70 16 8 C -0.21 -4.08 4.87 -20.00 -0.10 -4.18 16 9 C 0.57 12.65 6.60 86.72 0.57 13.22 16 10 O -0.56 -15.66 14.67 -3.96 -0.06 -15.72 16 11 N -0.59 -11.25 2.41 -822.57 -1.98 -13.23 16 12 C 0.10 1.80 5.56 86.36 0.48 2.28 16 13 C -0.13 -2.89 4.90 30.67 0.15 -2.74 16 14 C -0.08 -2.04 1.96 -10.77 -0.02 -2.06 16 15 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.16 5.63 5.18 86.38 0.45 6.08 16 17 N -0.75 -33.43 5.12 -343.46 -1.76 -35.18 16 18 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 19 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 21 N -0.99 -62.86 13.97 21.65 0.30 -62.56 16 22 Si 0.95 43.87 27.74 68.60 1.90 45.78 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.25 -9.90 6.52 99.48 0.65 -9.25 16 26 C -0.09 -1.83 2.72 -10.72 -0.03 -1.86 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 C -0.14 -3.07 8.38 71.98 0.60 -2.46 16 29 C 0.12 2.20 5.82 86.36 0.50 2.70 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.07 1.48 5.75 -2.39 -0.01 1.47 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.42 1.94 9.06 -74.06 -0.67 1.27 16 35 H 0.18 2.58 7.42 -2.91 -0.02 2.55 16 36 H 0.09 1.50 4.77 -2.39 -0.01 1.49 16 37 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 1.79 7.15 -2.39 -0.02 1.77 16 39 H 0.06 1.59 6.33 -2.39 -0.02 1.57 16 40 H 0.02 0.84 6.74 -2.38 -0.02 0.82 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.37 15.16 4.71 -92.71 -0.44 14.72 16 43 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.05 1.24 6.59 -2.39 -0.02 1.22 16 46 H 0.05 1.12 5.97 -2.39 -0.01 1.11 16 47 H 0.09 1.79 7.03 -2.39 -0.02 1.77 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.88 373.39 0.00 -75.88 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.16 Total: 25.67 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.14 Total: 1.80 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -6.63 Total: -125.12 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.25 Total: -24.00 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Total: -75.88 0.00 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185132174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.655 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds