Wall clock time and date at job start Tue Mar 31 2020 17:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38673 * 120.78823 * 2 1 4 4 C 1.38180 * 119.16044 * 180.02562 * 3 2 1 5 5 N 1.31881 * 120.76633 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.72590 * 359.77310 * 5 4 3 7 7 C 1.38226 * 120.76323 * 0.49262 * 6 5 4 8 8 C 1.50703 * 120.41813 * 179.77345 * 7 6 5 9 9 C 1.50704 * 109.46973 * 264.71825 * 8 7 6 10 10 O 1.21278 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99698 * 179.97438 * 9 8 7 12 12 C 1.47507 * 118.76071 * 0.02562 * 11 9 8 13 13 C 1.53576 * 111.02764 * 138.37086 * 12 11 9 14 14 C 1.51529 * 109.58129 * 320.02362 * 13 12 11 15 15 O 1.42160 * 108.76635 * 91.40023 * 14 13 12 16 16 C 1.38017 * 119.43456 * 272.77841 * 15 14 13 17 17 H 1.09003 * 109.47220 * 303.41970 * 16 15 14 18 18 C 1.52996 * 109.46945 * 183.42641 * 16 15 14 19 19 N 1.46493 * 109.47400 * 64.99327 * 18 16 15 20 20 C 1.36936 * 120.00314 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 C 1.45125 * 118.75709 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47016 * 269.97956 * 1 2 3 30 30 H 1.09002 * 109.46894 * 29.98052 * 1 2 3 31 31 H 1.08998 * 109.46837 * 149.97868 * 1 2 3 32 32 H 1.08002 * 120.41860 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.61650 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.61980 * 180.24342 * 6 5 4 35 35 H 1.09003 * 109.47204 * 144.72203 * 8 7 6 36 36 H 1.08998 * 109.47125 * 24.71827 * 8 7 6 37 37 H 1.09001 * 109.16449 * 17.97301 * 12 11 9 38 38 H 1.09001 * 109.16767 * 258.77006 * 12 11 9 39 39 H 1.08994 * 109.45370 * 199.98685 * 13 12 11 40 40 H 1.09003 * 109.45019 * 80.05476 * 13 12 11 41 41 H 1.09005 * 109.59146 * 331.61687 * 14 13 12 42 42 H 1.08998 * 109.59264 * 211.18017 * 14 13 12 43 43 H 1.09004 * 109.47066 * 304.99593 * 18 16 15 44 44 H 1.09000 * 109.47234 * 185.00102 * 18 16 15 45 45 H 0.97000 * 120.00040 * 0.02562 * 19 18 16 46 46 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 47 47 H 1.08993 * 109.46175 * 149.27250 * 28 11 9 48 48 H 1.09000 * 109.46308 * 29.30625 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5984 -1.1515 0.0044 7 6 2.2167 -1.1908 -0.0004 8 6 1.4909 -2.5116 0.0002 9 6 1.1394 -2.8922 -1.4150 10 8 1.4482 -2.1631 -2.3336 11 7 0.4827 -4.0434 -1.6598 12 6 0.1209 -4.9099 -0.5222 13 6 -1.2970 -5.4756 -0.6895 14 6 -2.2088 -4.4031 -1.2503 15 8 -2.2044 -4.4950 -2.6689 16 6 -1.2392 -3.8209 -3.3893 17 1 -1.2771 -2.7597 -3.1431 18 6 -1.4972 -4.0066 -4.8858 19 7 -2.7658 -3.3685 -5.2456 20 6 -3.2076 -3.4051 -6.5413 21 1 -2.6209 -3.9048 -7.2979 22 6 -4.4094 -2.7999 -6.8821 23 7 -4.8313 -2.8305 -8.1286 24 14 -5.4239 -1.9349 -5.5737 25 1 -6.3749 -2.9003 -4.9663 26 1 -4.5224 -1.3997 -4.5220 27 1 -6.1807 -0.8173 -6.1926 28 6 0.1582 -4.3837 -3.0328 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6967 2.1378 0.0004 33 1 4.1584 2.0755 -0.0001 34 1 4.1586 -2.0749 0.0082 35 1 0.5786 -2.4246 0.5903 36 1 2.1325 -3.2785 0.4340 37 1 0.1683 -4.3293 0.3991 38 1 0.8305 -5.7351 -0.4610 39 1 -1.6741 -5.8023 0.2796 40 1 -1.2710 -6.3240 -1.3734 41 1 -1.8472 -3.4206 -0.9467 42 1 -3.2220 -4.5531 -0.8776 43 1 -1.5476 -5.0708 -5.1165 44 1 -0.6867 -3.5498 -5.4538 45 1 -3.2926 -2.9193 -4.5662 46 1 -5.6691 -2.4042 -8.3676 47 1 0.1529 -5.4677 -3.1467 48 1 0.9044 -3.9522 -3.7000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200722465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:51 Heat of formation + Delta-G solvation = -22.343171 kcal Electronic energy + Delta-G solvation = -29562.271244 eV Core-core repulsion = 25617.993210 eV Total energy + Delta-G solvation = -3944.278034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10461 -40.22556 -38.57998 -35.81830 -34.84814 -34.64487 -33.04508 -32.69422 -31.17122 -29.77474 -28.57304 -27.74011 -26.68920 -25.18600 -23.22221 -22.55107 -21.80545 -21.71587 -21.09202 -19.17498 -17.76659 -17.55993 -17.09088 -16.83942 -16.61404 -16.48179 -15.89841 -15.32903 -15.10185 -14.68637 -14.39548 -14.18218 -14.10550 -13.80019 -13.56933 -13.42239 -13.12511 -13.03209 -12.90938 -12.87412 -12.65002 -12.55145 -12.33173 -12.13518 -11.90280 -11.65746 -11.48910 -11.22911 -10.96012 -10.82753 -10.40790 -10.12961 -10.02085 -9.68688 -9.63273 -9.57492 -9.54182 -9.18794 -8.85420 -8.70491 -7.16629 -5.71235 -3.05679 0.85047 1.03564 2.38909 2.72284 3.42428 3.46196 3.48969 3.54699 3.78165 4.11626 4.27065 4.33214 4.41387 4.45200 4.54945 4.56045 4.64912 4.65346 4.78559 4.96827 5.01279 5.06896 5.14575 5.19175 5.21996 5.23369 5.29433 5.32092 5.37270 5.46092 5.52482 5.58800 5.68192 5.68661 5.78228 5.82561 5.83537 5.94117 5.98732 6.08027 6.36276 6.47004 6.56047 6.67125 7.06589 7.75279 7.81549 7.96531 8.04681 8.47812 9.27262 9.99782 10.20493 11.47331 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003264 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.082994 B = 8576.933861 C = 9575.551955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.023 4.023 3 C -0.173 4.173 4 C 0.099 3.901 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.121 4.121 8 C -0.098 4.098 9 C 0.507 3.493 10 O -0.520 6.520 11 N -0.611 5.611 12 C 0.104 3.896 13 C -0.167 4.167 14 C 0.072 3.928 15 O -0.372 6.372 16 C 0.085 3.915 17 H 0.050 0.950 18 C 0.171 3.829 19 N -0.750 5.750 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.292 1.292 28 C 0.082 3.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.363 0.637 46 H 0.259 0.741 47 H 0.085 0.915 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 -0.484 25.936 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.031 4.031 3 C -0.193 4.193 4 C -0.057 4.057 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.124 4.124 8 C -0.138 4.138 9 C 0.294 3.706 10 O -0.395 6.395 11 N -0.345 5.345 12 C -0.019 4.019 13 C -0.206 4.206 14 C -0.005 4.005 15 O -0.290 6.290 16 C 0.025 3.975 17 H 0.068 0.932 18 C 0.043 3.957 19 N -0.396 5.396 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.584 5.584 24 Si 0.717 3.283 25 H -0.210 1.210 26 H -0.205 1.205 27 H -0.218 1.218 28 C -0.042 4.042 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.196 0.804 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.086 -0.255 25.088 29.276 hybrid contribution -1.540 0.711 1.039 1.989 sum 13.546 0.456 26.127 29.434 Atomic orbital electron populations 1.20870 0.90353 1.03951 1.02505 1.20147 0.96658 0.92486 0.93837 1.22022 0.95652 0.98575 1.03012 1.22728 0.91773 0.96242 0.94946 1.67668 1.41062 0.98438 1.12599 1.22555 0.90721 0.96345 0.94639 1.20158 0.94988 0.94137 1.03072 1.20661 1.02049 0.95668 0.95464 1.20570 0.77986 0.80981 0.91080 1.90779 1.52603 1.50045 1.46043 1.47962 1.57302 1.21619 1.07613 1.22029 0.96918 0.94523 0.88391 1.22505 0.94448 1.00650 1.02952 1.22134 0.99606 0.97085 0.81632 1.86430 1.53154 1.72136 1.17251 1.22330 0.86495 0.95031 0.93648 0.93178 1.20589 0.89858 0.97313 0.87974 1.42563 1.22019 1.66925 1.08048 1.19064 1.03444 1.29837 0.84696 0.89166 1.24646 0.97771 1.00842 0.95946 1.69707 1.23035 1.49541 1.16115 0.86503 0.80544 0.79564 0.81673 1.21040 1.20538 1.21829 1.22396 0.98464 1.01380 0.81926 0.90388 0.90547 0.91270 0.84752 0.82786 0.83103 0.87782 0.87682 0.89969 0.91175 0.89571 0.89724 0.93633 0.89275 0.94568 0.93922 0.80384 0.93124 0.89638 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.31 36.01 0.34 -0.73 16 2 C -0.02 -0.24 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.66 9.82 -39.44 -0.39 -2.05 16 4 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 5 N -0.49 -5.80 10.36 -13.25 -0.14 -5.93 16 6 C 0.11 1.22 10.84 -17.55 -0.19 1.03 16 7 C -0.12 -1.23 4.39 -104.48 -0.46 -1.69 16 8 C -0.10 -0.78 3.52 -29.03 -0.10 -0.88 16 9 C 0.51 5.96 6.95 -10.98 -0.08 5.89 16 10 O -0.52 -8.58 15.46 5.56 0.09 -8.49 16 11 N -0.61 -6.47 2.19 -172.46 -0.38 -6.85 16 12 C 0.10 0.70 6.00 -3.19 -0.02 0.68 16 13 C -0.17 -1.28 5.78 -27.18 -0.16 -1.44 16 14 C 0.07 0.80 6.37 36.41 0.23 1.04 16 15 O -0.37 -5.94 9.38 -26.54 -0.25 -6.19 16 16 C 0.09 1.41 2.68 -25.78 -0.07 1.34 16 17 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.17 3.47 5.92 -4.05 -0.02 3.45 16 19 N -0.75 -18.93 5.34 -59.91 -0.32 -19.25 16 20 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 23 N -0.94 -30.17 13.97 55.49 0.78 -29.40 16 24 Si 0.89 23.02 27.74 -169.99 -4.72 18.30 16 25 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.91 6.51 56.52 0.37 -6.54 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 C 0.08 1.08 4.86 -3.83 -0.02 1.06 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.69 6.36 -51.93 -0.33 0.36 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.10 0.62 6.37 -51.93 -0.33 0.29 16 36 H 0.10 0.54 7.96 -51.93 -0.41 0.13 16 37 H 0.08 0.36 5.88 -51.93 -0.31 0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 41 H 0.05 0.49 7.40 -51.93 -0.38 0.11 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.36 9.11 5.51 -40.82 -0.22 8.89 16 46 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 47 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 48 H 0.10 1.38 7.27 -51.93 -0.38 1.01 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -37.74 383.20 -8.61 -46.35 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.44 Total: 5.28 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.00 Total: 0.41 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.06 Total: -61.43 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.16 Total: -14.68 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.72 Total: 18.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.74 -8.61 -46.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200722465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.006 kcal (2) G-P(sol) polarization free energy of solvation -37.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds