Wall clock time and date at job start Tue Mar 31 2020 17:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38673 * 120.78823 * 2 1 4 4 C 1.38180 * 119.16044 * 180.02562 * 3 2 1 5 5 N 1.31881 * 120.76633 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.72590 * 359.77310 * 5 4 3 7 7 C 1.38226 * 120.76323 * 0.49262 * 6 5 4 8 8 C 1.50703 * 120.41813 * 179.77345 * 7 6 5 9 9 C 1.50704 * 109.46973 * 264.71825 * 8 7 6 10 10 O 1.21278 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99698 * 179.97438 * 9 8 7 12 12 C 1.47507 * 118.76071 * 0.02562 * 11 9 8 13 13 C 1.53576 * 111.02764 * 138.37086 * 12 11 9 14 14 C 1.51529 * 109.58129 * 320.02362 * 13 12 11 15 15 O 1.42160 * 108.76635 * 91.40023 * 14 13 12 16 16 C 1.38017 * 119.43456 * 272.77841 * 15 14 13 17 17 H 1.09003 * 109.47220 * 303.41970 * 16 15 14 18 18 C 1.52996 * 109.46945 * 183.42641 * 16 15 14 19 19 N 1.46493 * 109.47400 * 64.99327 * 18 16 15 20 20 C 1.36936 * 120.00314 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 C 1.45125 * 118.75709 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47016 * 269.97956 * 1 2 3 30 30 H 1.09002 * 109.46894 * 29.98052 * 1 2 3 31 31 H 1.08998 * 109.46837 * 149.97868 * 1 2 3 32 32 H 1.08002 * 120.41860 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.61650 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.61980 * 180.24342 * 6 5 4 35 35 H 1.09003 * 109.47204 * 144.72203 * 8 7 6 36 36 H 1.08998 * 109.47125 * 24.71827 * 8 7 6 37 37 H 1.09001 * 109.16449 * 17.97301 * 12 11 9 38 38 H 1.09001 * 109.16767 * 258.77006 * 12 11 9 39 39 H 1.08994 * 109.45370 * 199.98685 * 13 12 11 40 40 H 1.09003 * 109.45019 * 80.05476 * 13 12 11 41 41 H 1.09005 * 109.59146 * 331.61687 * 14 13 12 42 42 H 1.08998 * 109.59264 * 211.18017 * 14 13 12 43 43 H 1.09004 * 109.47066 * 304.99593 * 18 16 15 44 44 H 1.09000 * 109.47234 * 185.00102 * 18 16 15 45 45 H 0.97000 * 120.00040 * 0.02562 * 19 18 16 46 46 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 47 47 H 1.08993 * 109.46175 * 149.27250 * 28 11 9 48 48 H 1.09000 * 109.46308 * 29.30625 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5984 -1.1515 0.0044 7 6 2.2167 -1.1908 -0.0004 8 6 1.4909 -2.5116 0.0002 9 6 1.1394 -2.8922 -1.4150 10 8 1.4482 -2.1631 -2.3336 11 7 0.4827 -4.0434 -1.6598 12 6 0.1209 -4.9099 -0.5222 13 6 -1.2970 -5.4756 -0.6895 14 6 -2.2088 -4.4031 -1.2503 15 8 -2.2044 -4.4950 -2.6689 16 6 -1.2392 -3.8209 -3.3893 17 1 -1.2771 -2.7597 -3.1431 18 6 -1.4972 -4.0066 -4.8858 19 7 -2.7658 -3.3685 -5.2456 20 6 -3.2076 -3.4051 -6.5413 21 1 -2.6209 -3.9048 -7.2979 22 6 -4.4094 -2.7999 -6.8821 23 7 -4.8313 -2.8305 -8.1286 24 14 -5.4239 -1.9349 -5.5737 25 1 -6.3749 -2.9003 -4.9663 26 1 -4.5224 -1.3997 -4.5220 27 1 -6.1807 -0.8173 -6.1926 28 6 0.1582 -4.3837 -3.0328 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6967 2.1378 0.0004 33 1 4.1584 2.0755 -0.0001 34 1 4.1586 -2.0749 0.0082 35 1 0.5786 -2.4246 0.5903 36 1 2.1325 -3.2785 0.4340 37 1 0.1683 -4.3293 0.3991 38 1 0.8305 -5.7351 -0.4610 39 1 -1.6741 -5.8023 0.2796 40 1 -1.2710 -6.3240 -1.3734 41 1 -1.8472 -3.4206 -0.9467 42 1 -3.2220 -4.5531 -0.8776 43 1 -1.5476 -5.0708 -5.1165 44 1 -0.6867 -3.5498 -5.4538 45 1 -3.2926 -2.9193 -4.5662 46 1 -5.6691 -2.4042 -8.3676 47 1 0.1529 -5.4677 -3.1467 48 1 0.9044 -3.9522 -3.7000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200722465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:50 Heat of formation + Delta-G solvation = -48.836041 kcal Electronic energy + Delta-G solvation = -29563.420061 eV Core-core repulsion = 25617.993210 eV Total energy + Delta-G solvation = -3945.426851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.93917 -41.06071 -39.62989 -37.03429 -36.31198 -35.43964 -34.36357 -33.49257 -32.99313 -30.84251 -29.54325 -28.62580 -27.50436 -26.56430 -24.41988 -23.65858 -23.01374 -22.48907 -22.35143 -19.99099 -19.82961 -18.47528 -17.88032 -17.79040 -17.59026 -17.31024 -16.92312 -16.51226 -16.18798 -15.95649 -15.67575 -15.22617 -14.99083 -14.89028 -14.83186 -14.48631 -14.26821 -14.04168 -13.80631 -13.79206 -13.69782 -13.60775 -13.46982 -13.27556 -12.93235 -12.86361 -12.59713 -12.41381 -12.28595 -12.10655 -12.00750 -11.84869 -11.49160 -11.05319 -10.99610 -10.58252 -10.43198 -10.35925 -9.91481 -9.66283 -9.34755 -8.05907 -5.39392 0.12954 0.30351 1.33374 1.37856 1.45002 1.54369 1.92412 2.45532 2.68266 2.81709 3.25514 3.44391 3.45588 3.58736 3.68401 3.77119 3.85020 3.90835 3.95717 4.00130 4.03224 4.08107 4.24847 4.29473 4.41360 4.43481 4.46755 4.49880 4.54695 4.64472 4.66987 4.70103 4.75154 4.83436 4.86827 4.90804 5.01002 5.05127 5.13391 5.14420 5.21665 5.37482 5.52015 5.70215 5.78089 6.17507 6.27366 6.70743 7.01897 7.03158 7.12266 7.78630 7.99094 9.15674 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003264 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.082994 B = 8576.933861 C = 9575.551955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.181 4.181 4 C 0.086 3.914 5 N -0.518 5.518 6 C 0.099 3.901 7 C -0.130 4.130 8 C -0.089 4.089 9 C 0.504 3.496 10 O -0.578 6.578 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.159 4.159 14 C 0.061 3.939 15 O -0.399 6.399 16 C 0.104 3.896 17 H 0.027 0.973 18 C 0.164 3.836 19 N -0.753 5.753 20 C -0.237 4.237 21 H 0.058 0.942 22 C -0.063 4.063 23 N -0.982 5.982 24 Si 0.959 3.041 25 H -0.274 1.274 26 H -0.261 1.261 27 H -0.291 1.291 28 C 0.094 3.906 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.102 0.898 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.038 -1.072 30.145 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.200 4.200 4 C -0.070 4.070 5 N -0.227 5.227 6 C -0.058 4.058 7 C -0.133 4.133 8 C -0.129 4.129 9 C 0.293 3.707 10 O -0.457 6.457 11 N -0.340 5.340 12 C -0.023 4.023 13 C -0.197 4.197 14 C -0.015 4.015 15 O -0.318 6.318 16 C 0.044 3.956 17 H 0.045 0.955 18 C 0.037 3.963 19 N -0.399 5.399 20 C -0.368 4.368 21 H 0.076 0.924 22 C -0.254 4.254 23 N -0.633 5.633 24 Si 0.786 3.214 25 H -0.200 1.200 26 H -0.187 1.187 27 H -0.217 1.217 28 C -0.031 4.031 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.117 0.883 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.199 0.801 46 H 0.068 0.932 47 H 0.120 0.880 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.017 -0.888 29.369 32.998 hybrid contribution -1.472 0.841 -0.296 1.721 sum 13.545 -0.047 29.072 32.073 Atomic orbital electron populations 1.20875 0.89438 1.03093 1.03902 1.20495 0.97556 0.92953 0.93796 1.22306 0.95685 0.99466 1.02569 1.23139 0.92424 0.96669 0.94762 1.67667 1.42066 0.99311 1.13673 1.22924 0.91429 0.96734 0.94698 1.20401 0.94970 0.95211 1.02675 1.20741 1.03695 0.95436 0.92995 1.21266 0.76964 0.80334 0.92109 1.90761 1.54965 1.51851 1.48082 1.48059 1.56603 1.21933 1.07404 1.22412 0.96825 0.95230 0.87855 1.22444 0.94243 0.98812 1.04180 1.22487 1.01387 0.98690 0.78935 1.86355 1.53277 1.71980 1.20169 1.21867 0.88630 0.94020 0.91092 0.95475 1.20731 0.87512 0.96596 0.91413 1.42566 1.23549 1.67326 1.06429 1.19065 1.03098 1.28737 0.85927 0.92376 1.25500 0.99282 1.02242 0.98396 1.69884 1.23758 1.51098 1.18537 0.85351 0.78809 0.78283 0.78965 1.19961 1.18664 1.21733 1.22053 0.95600 1.01794 0.83680 0.87745 0.90973 0.92518 0.82847 0.80801 0.81495 0.85081 0.84125 0.86602 0.88807 0.85977 0.90950 0.93335 0.88296 0.94484 0.94594 0.80148 0.93182 0.88011 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.31 71.24 0.66 -1.16 16 2 C -0.04 -0.76 5.92 -19.67 -0.12 -0.88 16 3 C -0.18 -3.29 9.82 22.36 0.22 -3.07 16 4 C 0.09 1.68 11.18 84.67 0.95 2.63 16 5 N -0.52 -12.02 10.36 -195.84 -2.03 -14.05 16 6 C 0.10 2.00 10.84 84.69 0.92 2.92 16 7 C -0.13 -2.41 4.39 -19.77 -0.09 -2.50 16 8 C -0.09 -1.10 3.52 29.10 0.10 -1.00 16 9 C 0.50 10.90 6.95 87.66 0.61 11.51 16 10 O -0.58 -19.13 15.46 -3.02 -0.05 -19.17 16 11 N -0.61 -11.33 2.19 -817.95 -1.79 -13.12 16 12 C 0.10 0.85 6.00 86.38 0.52 1.37 16 13 C -0.16 -1.75 5.78 30.31 0.18 -1.58 16 14 C 0.06 1.17 6.37 71.50 0.46 1.63 16 15 O -0.40 -12.22 9.38 -117.90 -1.11 -13.33 16 16 C 0.10 3.43 2.68 31.21 0.08 3.51 16 17 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 18 C 0.16 6.86 5.92 86.38 0.51 7.37 16 19 N -0.75 -38.54 5.34 -343.47 -1.83 -40.37 16 20 C -0.24 -14.41 10.47 84.03 0.88 -13.53 16 21 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 22 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 23 N -0.98 -65.02 13.97 21.65 0.30 -64.72 16 24 Si 0.96 47.85 27.74 68.60 1.90 49.75 16 25 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.26 -12.14 6.51 99.48 0.65 -11.49 16 27 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 28 C 0.09 2.39 4.86 87.25 0.42 2.82 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.06 1.03 6.36 -2.39 -0.02 1.02 16 32 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.13 0.92 6.37 -2.39 -0.02 0.91 16 36 H 0.14 0.74 7.96 -2.39 -0.02 0.72 16 37 H 0.12 0.28 5.88 -2.39 -0.01 0.27 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 1.04 8.01 -2.39 -0.02 1.02 16 41 H 0.05 0.91 7.40 -2.38 -0.02 0.89 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.37 18.18 5.51 -92.71 -0.51 17.67 16 46 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 47 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 48 H 0.07 2.24 7.27 -2.39 -0.02 2.22 16 Total: -1.00 -86.62 383.20 2.56 -84.05 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.39 Total: 24.33 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.77 Total: 6.62 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -5.35 Total: -132.26 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.15 Total: -32.50 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -86.62 2.56 -84.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200722465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.217 kcal (2) G-P(sol) polarization free energy of solvation -86.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds